Zeng Chao 曽超

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ZENG CHAO 曽超

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Researcher Number	80822460
Other IDs	https://orcid.org/0000-0002-6130-2438
Affiliation (Current)	2025: 早稲田大学, 理工学術院総合研究所(理工学研究所), 主任研究員(研究院准教授)
Affiliation (based on the past Project Information) *help	2021 – 2024: 早稲田大学, 理工学術院総合研究所(理工学研究所), 次席研究員(研究院講師) 2020: 国立研究開発法人産業技術総合研究所, 生命工学領域, 産総研特別研究員
Review Section/Research Field	Principal Investigator Basic Section 43060:System genome science-related Except Principal Investigator Medium-sized Section 62:Applied informatics and related fields / Medium-sized Section 50:Oncology and related fields
Keywords	Principal Investigator chromatin / TF / repetitive element / repeat / database / R-loop / NMD / RNA decay / lncRNA / Genetic compensation … More / RNA degradation / RNA-chromatin / 遺伝子補償応答 / genetic compensation / GCR … More Except Principal Investigator 分子シミュレーション / バイオインフォマティクス / RNA結合タンパク質 / ノンコーディングRNA / 相分離 / TP53 / ロングリード解析 / イントロン-エクソン化RNA / 大腸癌 / NEAT1 / hnRNP H1 / EXOSC4 / hnRNPK / hnRNPH1 / KeXT body / 3XT / 異常RNA / MTR4 / RNAエキソソーム複合体 / RNA品質管理機構 Less

Overview and Systematic Understanding of Biological Phase Separation Based on RNA-Centric Molecular Networks
- Principal Investigator
  
  浜田道昭
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 62:Applied informatics and related fields
- Research Institution
  Waseda University
Identification of repetitive elements involving genome regulationPrincipal Investigator
- Principal Investigator
  
  曽超
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  Waseda University
Intron-exonized RNA regulated by RNA surveillance systems and their involvement in cancer maintenance mechanisms.
- Principal Investigator
  
  Taniue Kenzui
- Project Period (FY)
  2021 – 2022
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 50:Oncology and related fields
- Research Institution
  The University of Tokyo
Identification and characterization of lncRNAs involved in genetic compensationPrincipal Investigator
- Principal Investigator
  
  ZENG CHAO
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  Waseda University
  National Institute of Advanced Industrial Science and Technology

All 2024 2023 2022 2021 2020

All Journal Article Presentation

[Journal Article] Identification of a novel RNA transcript TISPL upregulated by stressors that stimulate ATF42024
- Author(s)
  Wakabayashi Yutaro、Shimono Aika、Terauchi Yuki、Zeng Chao、Hamada Michiaki、Semba Kentaro、Watanabe Shinya、Ishikawa Kosuke
- Journal Title
  
  Gene
  
  Volume: 917 Pages: 148464-148464
- DOI
  10.1016/j.gene.2024.148464
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K15093
[Journal Article] Landscape of semi-extractable RNAs across five human cell lines2023
- Author(s)
  Zeng Chao、Chujo Takeshi、Hirose Tetsuro、Hamada Michiaki
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 51 Issue: 15 Pages: 7820-7831
- DOI
  10.1093/nar/gkad567
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K15093, KAKENHI-PROJECT-20H00624, KAKENHI-PLANNED-21H05276, KAKENHI-PROJECT-22H04925
[Journal Article] Long Non-Coding RNA CRNDE Is Involved in Resistance to EGFR Tyrosine Kinase Inhibitor in EGFR-Mutant Lung Cancer via eIF4A3/MUC1/EGFR Signaling2021
- Author(s)
  Takahashi Satoshi、Noro Rintaro、Seike Masahiro、Zeng Chao、Matsumoto Masaru、Yoshikawa Akiko、Nakamichi Shinji、Sugano Teppei、Hirao Mariko、Matsuda Kuniko、Hamada Michiaki、Gemma Akihiko
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 22 Issue: 8 Pages: 4005-4005
- DOI
  10.3390/ijms22084005
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K15784, KAKENHI-PROJECT-16H05879, KAKENHI-PROJECT-17K20032, KAKENHI-PROJECT-20K17200, KAKENHI-PROJECT-17KK0177
[Journal Article] Impact of human gene annotations on RNA-seq differential expression analysis2021
- Author(s)
  Hamaguchi Yu、Zeng Chao、Hamada Michiaki
- Journal Title
  
  BMC Genomics
  
  Volume: 22 Issue: 1 Pages: 730-730
- DOI
  10.1186/s12864-021-08038-7
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H05879, KAKENHI-PROJECT-17K20032, KAKENHI-PROJECT-20K15784, KAKENHI-PROJECT-16H06279
[Journal Article] Binding patterns of RNA-binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements2021
- Author(s)
  Onoguchi Masahiro、Zeng Chao、Matsumaru Ayako、Hamada Michiaki
- Journal Title
  
  NAR Genomics and Bioinformatics
  
  Volume: 3 Issue: 3
- DOI
  10.1093/nargab/lqab055
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H05879, KAKENHI-PROJECT-21K06133, KAKENHI-PROJECT-17K20032, KAKENHI-PROJECT-20K15784, KAKENHI-PROJECT-16H06279
[Journal Article] Association analysis of repetitive elements and R-loop formation across species2021
- Author(s)
  Zeng Chao、Onoguchi Masahiro、Hamada Michiaki
- Journal Title
  
  Mobile DNA
  
  Volume: 12 Issue: 1 Pages: 3-3
- DOI
  10.1186/s13100-021-00231-5
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K15784, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-16H05879, KAKENHI-PROJECT-17K20032
[Journal Article] Detection and Characterization of Ribosome-Associated Long Noncoding RNAs2020
- Author(s)
  Zeng Chao、Hamada Michiaki
- Journal Title
  
  Methods in Molecular Biology
  
  Volume: 2254 Pages: 179-194
- DOI
  10.1007/978-1-0716-1158-6_11
- ISBN
  9781071611579, 9781071611586
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K15784, KAKENHI-PROJECT-16H05879, KAKENHI-PROJECT-17K20032
[Journal Article] RNA-Seq Analysis Reveals Localization-Associated Alternative Splicing across 13 Cell Lines2020
- Author(s)
  Zeng Chao、Hamada Michiaki
- Journal Title
  
  Genes
  
  Volume: 11 Issue: 7 Pages: 820-820
- DOI
  10.3390/genes11070820
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K15784, KAKENHI-PROJECT-16H06279
[Presentation] 小胞体ストレスに応答する新規lncRNA TISPLの転写メカニズムおよび機能の解明2023
- Author(s)
  若林佑太郎, 下野愛夏, 石川公輔, 曽超, 浜田道昭, 渡辺慎哉, 仙波憲太郎
- Organizer
  第46回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22K15093
[Presentation] Landscape of semi-extractable RNAs across five human cell lines2023
- Author(s)
  Chao Zeng, Takeshi Chujo, Tetsuro Hirose, Michiaki Hamada
- Organizer
  第24回日本RNA学会年会
- Data Source
  KAKENHI-PROJECT-22K15093
[Presentation] 血清飢餓ストレスによって誘導される新規難溶性architectural RNA SISTの解析2023
- Author(s)
  金子修士, 藤原奈央子, 曽超, 浜田道昭, 廣瀬哲郎, 中條岳志
- Organizer
  第46回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22K15093
[Presentation] Integrated database for RNA-targeting drug discovery2023
- Author(s)
  Chao Zeng, Michiaki Hamada
- Organizer
  Cold Spring Harbor Asia Conference: The Now and Future of RNA Therapeutics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K15093
[Presentation] Identify the effect of R-loop on transcriptional regulatory mechanisms2022
- Author(s)
  Eito Ichihashi, Mai Kubota, Chao Zeng, Michiaki Hamada, Kazuko Nisikura, Yusuke Siromoto, Masayuki Sakurai
- Organizer
  第23回日本RNA学会年会
- Data Source
  KAKENHI-PROJECT-22K15093
[Presentation] De novo assembly and characterization of semi-extractable RNAs2022
- Author(s)
  Chao Zeng, Takeshi Chujo, Tetsuro Hirose, Michiaki Hamada
- Organizer
  第23回日本RNA学会年会
- Data Source
  KAKENHI-PROJECT-20K15784
[Presentation] Searching for Repeat-derived Functional Elements in RNAs2021
- Author(s)
  Chao Zeng, Michiaki Hamada
- Organizer
  第22回日本RNA学会年会
- Data Source
  KAKENHI-PROJECT-20K15784
[Presentation] リピート配列由来の機能エレメントの探索2021
- Author(s)
  曽超、浜田道昭
- Organizer
  第10回生命医薬情報学連合大会(IIBMP2021)
- Data Source
  KAKENHI-PROJECT-20K15784
[Presentation] Binding patterns of RNA binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements2021
- Author(s)
  Masahiro Onoguchi, Chao Zeng, Yukiteru Ono, Michiaki Hamada
- Organizer
  Noncoding RNAs: Biology and Applications (Keystone Symposia)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K15784
[Presentation] 転写因子結合部位として働く反復配列の発見とその機能の解明2021
- Author(s)
  Ryo Niwa, Chao Zeng and Michiaki Hamada
- Organizer
  第10回生命医薬情報学連合大会(IIBMP2021)
- Data Source
  KAKENHI-PROJECT-20K15784
[Presentation] Binding Patterns of RNA Binding Proteins To Repeat-Derived RNA Sequences Reveal Putative Functional RNA Elements2021
- Author(s)
  Masahiro Onoguchi, Chao Zeng, Yukiteru Ono, Michiaki Hamada
- Organizer
  第22回日本RNA学会年会
- Data Source
  KAKENHI-PROJECT-20K15784
[Presentation] ヒト遺伝子アノテーションがRNA-seq解析に与える影響の評価2021
- Author(s)
  Yu Hamaguchi, Chao Zeng and Michiaki Hamada
- Organizer
  第10回生命医薬情報学連合大会(IIBMP2021)
- Data Source
  KAKENHI-PROJECT-20K15784
[Presentation] Sequence characterization of R-loop-forming RNAs in mammals2020
- Author(s)
  Chao Zeng, Masahiro Onoguchi, Risa Maemura, Michiaki Hamada
- Organizer
  Transposable Elements
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K15784
[Presentation] Bioinformatic approaches for understanding RNA reincarnation2020
- Author(s)
  Chao Zeng, Masahiro Onoguchi, Michiaki Hamada
- Organizer
  第43回日本分子生物学会
- Data Source
  KAKENHI-PROJECT-20K15784

1. Taniue Kenzui (90648627)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. 浜田道昭 (00596538)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
3. 小野口真広 (30645297)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. 栗崎以久男 (50583340)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Zeng Chao 曽 超

ZENG CHAO 曽 超

Research Projects

Research Products

Co-Researchers

Overview and Systematic Understanding of Biological Phase Separation Based on RNA-Centric Molecular Networks

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Identification of repetitive elements involving genome regulationPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Intron-exonized RNA regulated by RNA surveillance systems and their involvement in cancer maintenance mechanisms.

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Identification and characterization of lncRNAs involved in genetic compensationPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Identification of a novel RNA transcript TISPL upregulated by stressors that stimulate ATF42024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Landscape of semi-extractable RNAs across five human cell lines2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Long Non-Coding RNA CRNDE Is Involved in Resistance to EGFR Tyrosine Kinase Inhibitor in EGFR-Mutant Lung Cancer via eIF4A3/MUC1/EGFR Signaling2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Impact of human gene annotations on RNA-seq differential expression analysis2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Binding patterns of RNA-binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Association analysis of repetitive elements and R-loop formation across species2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Detection and Characterization of Ribosome-Associated Long Noncoding RNAs2020

Author(s)

Journal Title

DOI

ISBN

Data Source

[Journal Article] RNA-Seq Analysis Reveals Localization-Associated Alternative Splicing across 13 Cell Lines2020

Author(s)

Journal Title

DOI

Data Source

[Presentation] 小胞体ストレスに応答する新規lncRNA TISPLの転写メカニズムおよび機能の解明2023

Author(s)

Organizer

Data Source

[Presentation] Landscape of semi-extractable RNAs across five human cell lines2023

Author(s)

Organizer

Data Source

[Presentation] 血清飢餓ストレスによって誘導される新規難溶性architectural RNA SISTの解析2023

Author(s)

Zeng Chao 曽超

ZENG CHAO 曽超