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Zeng Chao  曽 超

… Alternative Names

ZENG CHAO  曽 超

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Researcher Number 80822460
Other IDs
  • ORCIDhttps://orcid.org/0000-0002-6130-2438
Affiliation (Current) 2025: 早稲田大学, 理工学術院総合研究所(理工学研究所), 主任研究員(研究院准教授)
Affiliation (based on the past Project Information) *help 2021 – 2024: 早稲田大学, 理工学術院総合研究所(理工学研究所), 次席研究員(研究院講師)
2020: 国立研究開発法人産業技術総合研究所, 生命工学領域, 産総研特別研究員
Review Section/Research Field
Principal Investigator
Basic Section 43060:System genome science-related
Except Principal Investigator
Medium-sized Section 62:Applied informatics and related fields / Medium-sized Section 50:Oncology and related fields
Keywords
Principal Investigator
chromatin / TF / repetitive element / repeat / database / R-loop / NMD / RNA decay / lncRNA / Genetic compensation … More / RNA degradation / RNA-chromatin / 遺伝子補償応答 / genetic compensation / GCR … More
Except Principal Investigator
分子シミュレーション / バイオインフォマティクス / RNA結合タンパク質 / ノンコーディングRNA / 相分離 / TP53 / ロングリード解析 / イントロン-エクソン化RNA / 大腸癌 / NEAT1 / hnRNP H1 / EXOSC4 / hnRNPK / hnRNPH1 / KeXT body / 3XT / 異常RNA / MTR4 / RNAエキソソーム複合体 / RNA品質管理機構 Less
  • Research Projects

    (4 results)
  • Research Products

    (22 results)
  • Co-Researchers

    (4 People)
  •  Overview and Systematic Understanding of Biological Phase Separation Based on RNA-Centric Molecular Networks

    • Principal Investigator
      浜田 道昭
    • Project Period (FY)
      2023 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 62:Applied informatics and related fields
    • Research Institution
      Waseda University
  •  Identification of repetitive elements involving genome regulationPrincipal Investigator

    • Principal Investigator
      曽 超
    • Project Period (FY)
      2022 – 2024
    • Research Category
      Grant-in-Aid for Early-Career Scientists
    • Review Section
      Basic Section 43060:System genome science-related
    • Research Institution
      Waseda University
  •  Intron-exonized RNA regulated by RNA surveillance systems and their involvement in cancer maintenance mechanisms.

    • Principal Investigator
      Taniue Kenzui
    • Project Period (FY)
      2021 – 2022
    • Research Category
      Grant-in-Aid for Challenging Research (Exploratory)
    • Review Section
      Medium-sized Section 50:Oncology and related fields
    • Research Institution
      The University of Tokyo
  •  Identification and characterization of lncRNAs involved in genetic compensationPrincipal Investigator

    • Principal Investigator
      ZENG CHAO
    • Project Period (FY)
      2020 – 2022
    • Research Category
      Grant-in-Aid for Early-Career Scientists
    • Review Section
      Basic Section 43060:System genome science-related
    • Research Institution
      Waseda University
      National Institute of Advanced Industrial Science and Technology

All 2024 2023 2022 2021 2020

All Journal Article Presentation

  • [Journal Article] Identification of a novel RNA transcript TISPL upregulated by stressors that stimulate ATF42024

    • Author(s)
      Wakabayashi Yutaro、Shimono Aika、Terauchi Yuki、Zeng Chao、Hamada Michiaki、Semba Kentaro、Watanabe Shinya、Ishikawa Kosuke
    • Journal Title

      Gene

      Volume: 917 Pages: 148464-148464

    • DOI

      10.1016/j.gene.2024.148464

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K15093
  • [Journal Article] Landscape of semi-extractable RNAs across five human cell lines2023

    • Author(s)
      Zeng Chao、Chujo Takeshi、Hirose Tetsuro、Hamada Michiaki
    • Journal Title

      Nucleic Acids Research

      Volume: 51 Issue: 15 Pages: 7820-7831

    • DOI

      10.1093/nar/gkad567

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K15093, KAKENHI-PROJECT-20H00624, KAKENHI-PLANNED-21H05276, KAKENHI-PROJECT-22H04925
  • [Journal Article] Long Non-Coding RNA CRNDE Is Involved in Resistance to EGFR Tyrosine Kinase Inhibitor in EGFR-Mutant Lung Cancer via eIF4A3/MUC1/EGFR Signaling2021

    • Author(s)
      Takahashi Satoshi、Noro Rintaro、Seike Masahiro、Zeng Chao、Matsumoto Masaru、Yoshikawa Akiko、Nakamichi Shinji、Sugano Teppei、Hirao Mariko、Matsuda Kuniko、Hamada Michiaki、Gemma Akihiko
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 22 Issue: 8 Pages: 4005-4005

    • DOI

      10.3390/ijms22084005

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K15784, KAKENHI-PROJECT-16H05879, KAKENHI-PROJECT-17K20032, KAKENHI-PROJECT-20K17200, KAKENHI-PROJECT-17KK0177
  • [Journal Article] Impact of human gene annotations on RNA-seq differential expression analysis2021

    • Author(s)
      Hamaguchi Yu、Zeng Chao、Hamada Michiaki
    • Journal Title

      BMC Genomics

      Volume: 22 Issue: 1 Pages: 730-730

    • DOI

      10.1186/s12864-021-08038-7

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16H05879, KAKENHI-PROJECT-17K20032, KAKENHI-PROJECT-20K15784, KAKENHI-PROJECT-16H06279
  • [Journal Article] Binding patterns of RNA-binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements2021

    • Author(s)
      Onoguchi Masahiro、Zeng Chao、Matsumaru Ayako、Hamada Michiaki
    • Journal Title

      NAR Genomics and Bioinformatics

      Volume: 3 Issue: 3

    • DOI

      10.1093/nargab/lqab055

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16H05879, KAKENHI-PROJECT-21K06133, KAKENHI-PROJECT-17K20032, KAKENHI-PROJECT-20K15784, KAKENHI-PROJECT-16H06279
  • [Journal Article] Association analysis of repetitive elements and R-loop formation across species2021

    • Author(s)
      Zeng Chao、Onoguchi Masahiro、Hamada Michiaki
    • Journal Title

      Mobile DNA

      Volume: 12 Issue: 1 Pages: 3-3

    • DOI

      10.1186/s13100-021-00231-5

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K15784, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-16H05879, KAKENHI-PROJECT-17K20032
  • [Journal Article] Detection and Characterization of Ribosome-Associated Long Noncoding RNAs2020

    • Author(s)
      Zeng Chao、Hamada Michiaki
    • Journal Title

      Methods in Molecular Biology

      Volume: 2254 Pages: 179-194

    • DOI

      10.1007/978-1-0716-1158-6_11

    • ISBN
      9781071611579, 9781071611586
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20K15784, KAKENHI-PROJECT-16H05879, KAKENHI-PROJECT-17K20032
  • [Journal Article] RNA-Seq Analysis Reveals Localization-Associated Alternative Splicing across 13 Cell Lines2020

    • Author(s)
      Zeng Chao、Hamada Michiaki
    • Journal Title

      Genes

      Volume: 11 Issue: 7 Pages: 820-820

    • DOI

      10.3390/genes11070820

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K15784, KAKENHI-PROJECT-16H06279
  • [Presentation] 小胞体ストレスに応答する新規lncRNA TISPLの転写メカニズムおよび機能の解明2023

    • Author(s)
      若林佑太郎, 下野愛夏, 石川公輔, 曽超, 浜田道昭, 渡辺慎哉, 仙波憲太郎
    • Organizer
      第46回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-22K15093
  • [Presentation] Landscape of semi-extractable RNAs across five human cell lines2023

    • Author(s)
      Chao Zeng, Takeshi Chujo, Tetsuro Hirose, Michiaki Hamada
    • Organizer
      第24回日本RNA学会年会
    • Data Source
      KAKENHI-PROJECT-22K15093
  • [Presentation] 血清飢餓ストレスによって誘導される新規難溶性architectural RNA SISTの解析2023

    • Author(s)
      金子修士, 藤原奈央子, 曽超, 浜田道昭, 廣瀬哲郎, 中條岳志
    • Organizer
      第46回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-22K15093
  • [Presentation] Integrated database for RNA-targeting drug discovery2023

    • Author(s)
      Chao Zeng, Michiaki Hamada
    • Organizer
      Cold Spring Harbor Asia Conference: The Now and Future of RNA Therapeutics
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22K15093
  • [Presentation] Identify the effect of R-loop on transcriptional regulatory mechanisms2022

    • Author(s)
      Eito Ichihashi, Mai Kubota, Chao Zeng, Michiaki Hamada, Kazuko Nisikura, Yusuke Siromoto, Masayuki Sakurai
    • Organizer
      第23回日本RNA学会年会
    • Data Source
      KAKENHI-PROJECT-22K15093
  • [Presentation] De novo assembly and characterization of semi-extractable RNAs2022

    • Author(s)
      Chao Zeng, Takeshi Chujo, Tetsuro Hirose, Michiaki Hamada
    • Organizer
      第23回日本RNA学会年会
    • Data Source
      KAKENHI-PROJECT-20K15784
  • [Presentation] Searching for Repeat-derived Functional Elements in RNAs2021

    • Author(s)
      Chao Zeng, Michiaki Hamada
    • Organizer
      第22回日本RNA学会年会
    • Data Source
      KAKENHI-PROJECT-20K15784
  • [Presentation] リピート配列由来の機能エレメントの探索2021

    • Author(s)
      曽 超、浜田 道昭
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Data Source
      KAKENHI-PROJECT-20K15784
  • [Presentation] Binding patterns of RNA binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements2021

    • Author(s)
      Masahiro Onoguchi, Chao Zeng, Yukiteru Ono, Michiaki Hamada
    • Organizer
      Noncoding RNAs: Biology and Applications (Keystone Symposia)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K15784
  • [Presentation] 転写因子結合部位として働く反復配列の発見とその機能の解明2021

    • Author(s)
      Ryo Niwa, Chao Zeng and Michiaki Hamada
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Data Source
      KAKENHI-PROJECT-20K15784
  • [Presentation] Binding Patterns of RNA Binding Proteins To Repeat-Derived RNA Sequences Reveal Putative Functional RNA Elements2021

    • Author(s)
      Masahiro Onoguchi, Chao Zeng, Yukiteru Ono, Michiaki Hamada
    • Organizer
      第22回日本RNA学会年会
    • Data Source
      KAKENHI-PROJECT-20K15784
  • [Presentation] ヒト遺伝子アノテーションがRNA-seq解析に与える影響の評価2021

    • Author(s)
      Yu Hamaguchi, Chao Zeng and Michiaki Hamada
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Data Source
      KAKENHI-PROJECT-20K15784
  • [Presentation] Sequence characterization of R-loop-forming RNAs in mammals2020

    • Author(s)
      Chao Zeng, Masahiro Onoguchi, Risa Maemura, Michiaki Hamada
    • Organizer
      Transposable Elements
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K15784
  • [Presentation] Bioinformatic approaches for understanding RNA reincarnation2020

    • Author(s)
      Chao Zeng, Masahiro Onoguchi, Michiaki Hamada
    • Organizer
      第43回日本分子生物学会
    • Data Source
      KAKENHI-PROJECT-20K15784
  • 1.  Taniue Kenzui (90648627)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 2.  浜田 道昭 (00596538)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 3.  小野口 真広 (30645297)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 4.  栗崎 以久男 (50583340)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results

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