Paudel Atmika PAUDEL ATMIKA

Researcher Number	80832774
Other IDs	https://orcid.org/0000-0003-3478-9452
Affiliation (based on the past Project Information) *help	2021: 北海道大学, 人獣共通感染症国際共同研究所, 助教 2021: 北海道大学, 人獣共通感染症国際共同研究所, 特任助教 2020: 北海道大学, 人獣共通感染症リサーチセンター, 特任助教 2019: 帝京大学, 付置研究所, 研究員
Review Section/Research Field	Principal Investigator Basic Section 49050:Bacteriology-related
Keywords	Principal Investigator virulence / silkworm / pathogenecity / Bacillus cereus / anti-infective agents / Pathogenicity / silkworm infection model / host-pathogen / Staphylococcus aureus / Bombyx mori … More / infection / virulence factor / pathogenesis / ST1420 Less

Identification of genetic basis of virulence determinants of emerging Bacillus cereus ST1420 using silkworm modelPrincipal Investigator
- Principal Investigator
  
  PAUDEL ATMIKA
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 49050:Bacteriology-related
- Research Institution
  Hokkaido University
Identification and characterization of novel virulence factors of Staphylococcus aureus USA300 using silkworm model.Principal Investigator
- Principal Investigator
  
  Paudel Atmika
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 49050:Bacteriology-related
- Research Institution
  Hokkaido University
  Teikyo University

All 2022 2021 2020 2019

All Journal Article Presentation

[Journal Article] Clonal relationship between multidrug-resistant Escherichia coli ST69 from poultry and humans in Lusaka, Zambia2022
- Author(s)
  Shawa Misheck、Furuta Yoshikazu、Paudel Atmika、Kabunda O'Brian、Mulenga Evans、Mubanga Maron、Kamboyi Harvey、Zorigt Tuvshinzaya、Chambaro Herman、Simbotwe Manyando、Hang'ombe Bernard、Higashi Hideaki
- Journal Title
  
  FEMS Microbiology Letters
  
  Volume: 368 Pages: 21-24
- DOI
  10.1093/femsle/fnac004
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16653, KAKENHI-PROJECT-18K19436
[Journal Article] Complete Genome Sequences of 24 Strains of Bacillus cereus Isolated from Nosocomial Infection and Bacteremia Cases in Japan2022
- Author(s)
  Furuta Yoshikazu、Tsujinouchi Mai、Shawa Misheck、Zorigt Tuvshinzaya、Miyajima Yuya、Paudel Atmika、Suzuki Satowa、Higashi Hideaki
- Journal Title
  
  Microbiology Resource Announcements
  
  Volume: 11 Issue: 4
- DOI
  10.1128/mra.01203-21
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16653, KAKENHI-PROJECT-20K08853, KAKENHI-PROJECT-18K19436
[Journal Article] Direct Regulons of AtxA, the Master Virulence Regulator of Bacillus anthracis2021
- Author(s)
  Furuta Yoshikazu、Cheng Cheng、Zorigt Tuvshinzaya、Paudel Atmika、Izumi Shun、Tsujinouchi Mai、Shimizu Tomoko、Meijer Wim G.、Higashi Hideaki
- Journal Title
  
  mSystems
  
  Volume: 6 Issue: 4
- DOI
  10.1128/msystems.00291-21
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16653, KAKENHI-PROJECT-18K19436
[Journal Article] YjbH regulates virulence genes expression and oxidative stress resistance in Staphylococcus aureus2021
- Author(s)
  Paudel Atmika、Panthee Suresh、Hamamoto Hiroshi、Grunert Tom、Sekimizu Kazuhisa
- Journal Title
  
  Virulence
  
  Volume: 12 Issue: 1 Pages: 470-480
- DOI
  10.1080/21505594.2021.1875683
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07140, KAKENHI-PROJECT-19K16653
[Journal Article] Comparative analysis of COVID‐19 case fatality rate between two waves in Nepal2021
- Author(s)
  GC Sulochan、Khanal Ashok、Paudel Atmika、GC Vijay S.、Khanal Aashis、Panthee Suresh
- Journal Title
  
  Influenza and Other Respiratory Viruses
  
  Volume: 16 Issue: 2 Pages: 186-189
- DOI
  10.1111/irv.12922
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16653
[Journal Article] Complete genome sequence and comparative genomic analysis of Enterococcus faecalis EF-2001, a probiotic bacterium2021
- Author(s)
  Panthee Suresh、Paudel Atmika、Hamamoto Hiroshi、Ogasawara Akihiko Ano、Iwasa Toshihiro、Blom Jochen、Sekimizu Kazuhisa
- Journal Title
  
  Genomics
  
  Volume: 113 Issue: 3 Pages: 1534-1542
- DOI
  10.1016/j.ygeno.2021.03.021
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07140, KAKENHI-PROJECT-19K16653
[Journal Article] Novel chromosomal insertions of ISEcp1-bla CTX-M-15 and diverse antimicrobial resistance genes in Zambian clinical isolates of Enterobacter cloacae and Escherichia coli2021
- Author(s)
  Misheck Shawa; Yoshikazu Furuta; Gillan Mulenga; Maron Mubanga; Evans Mulenga; Tuvshinzaya Zorigt; Christone Kaile; Manyando Simbotwe; Atmika Paudel; Bernard Hang’ombe; Hideaki HIGASHI
- Journal Title
  
  Antimicrobial Resistance & Infection Control
  
  Volume: 印刷中 Issue: 1 Pages: 79-79
- DOI
  10.1186/s13756-021-00941-8
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K19436, KAKENHI-PROJECT-19K16653
[Journal Article] Novel Pathogenic Mucorales Identified Using the Silkworm Infection Model2021
- Author(s)
  Panthee Suresh、Hamamoto Hiroshi、Nishiyama Yayoi、Paudel Atmika、Sekimizu Kazuhisa
- Journal Title
  
  Journal of Fungi
  
  Volume: 7 Issue: 11 Pages: 995-995
- DOI
  10.3390/jof7110995
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07140, KAKENHI-PROJECT-19K16653
[Journal Article] Novel chromosomal insertions of ISEcp1-blaCTX-M-15 and diverse antimicrobial resistance genes in Zambian clinical isolates of Enterobacter cloacae and Escherichia coli2021
- Author(s)
  Misheck Shawa, Yoshikazu Furuta, Gillan Mulenga, Maron Mubanga, Evans Mulenga, Tuvshinzaya Zorigt, Christone Kaile, Manyando Simbotwe, Atmika Paudel, Bernard Hang’ombe, Hideaki HIGASHI
- Journal Title
  
  BMC Antimicrobial Resistance & Infection Control
  
  Volume: accepted
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16653
[Journal Article] Silkworm model for Bacillus anthracis infection and virulence determination2021
- Author(s)
  Paudel Atmika、Furuta Yoshikazu、Higashi Hideaki
- Journal Title
  
  Virulence
  
  Volume: 12 Issue: 1 Pages: 2285-2295
- DOI
  10.1080/21505594.2021.1965830
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16653, KAKENHI-PROJECT-18K19436
[Journal Article] Serum apolipoprotein A-I potentiates the therapeutic efficacy of lysocin E against Staphylococcus aureus2021
- Author(s)
  Hiroshi Hamamoto*, Suresh Panthee*, Atmika Paudel, Kenichi Ishii, Jyunichiro Yasukawa, Su Jie, Atsushi Miyashita, Hiroaki Itoh, Kotaro Tokumoto, Masayuki Inoue, Kazuhisa Sekimizu
- Journal Title
  
  Nature Communications
  
  Volume: 12 Issue: 1 Pages: 6364-6364
- DOI
  10.1038/s41467-021-26702-0
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-16H06456, KAKENHI-PROJECT-19K07140, KAKENHI-PROJECT-19K16653, KAKENHI-ORGANIZER-16H06455, KAKENHI-WRAPUP-21H00457, KAKENHI-PROJECT-17H06110, KAKENHI-PROJECT-21K05286
[Journal Article] The Role of Amino Acid Substitution in HepT Toward Menaquinone Isoprenoid Chain Length Definition and Lysocin E Sensitivity in Staphylococcus aureus2020
- Author(s)
  Panthee Suresh、Paudel Atmika、Hamamoto Hiroshi、Uhlemann Anne-Catrin、Sekimizu Kazuhisa
- Journal Title
  
  Frontiers in Microbiology
  
  Volume: 11 Pages: 2076-2076
- DOI
  10.3389/fmicb.2020.02076
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07140, KAKENHI-PROJECT-19K16653
[Journal Article] Clinical and epidemiological features of COVID-19 deaths in Nepal2020
- Author(s)
  Bimala Panthee, Saraswati Dhungana, Nirmal Panthee, Saroj Gyawali, Atmika Paudel, Suresh Panthee
- Journal Title
  
  New Microbes and New Infections
  
  Volume: 38 Pages: 100797-100797
- DOI
  10.1016/j.nmni.2020.100797
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16653
[Journal Article] A simple artificial diet available for research of silkworm disease models2020
- Author(s)
  Paudel Atmika、Panthee Suresh、Hamamoto Hiroshi、Sekimizu Kazuhisa
- Journal Title
  
  Drug Discoveries & Therapeutics
  
  Volume: 14 Issue: 4 Pages: 177-180
- DOI
  10.5582/ddt.2020.03061
- NAID
  130007897980
- ISSN
  1881-7831, 1881-784X
- Year and Date
  2020-08-31
- Language
  English
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07140, KAKENHI-PROJECT-19K16653
[Journal Article] Discovery of gramicidin A analogues with altered activities by multidimensional screening of a one-bead-one-compound library2020
- Author(s)
  Takada Yuri、Itoh Hiroaki、Paudel Atmika、Panthee Suresh、Hamamoto Hiroshi、Sekimizu Kazuhisa、Inoue Masayuki
- Journal Title
  
  Nature Communications
  
  Volume: 11 Issue: 1 Pages: 4935-4935
- DOI
  10.1038/s41467-020-18711-2
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07140, KAKENHI-PROJECT-19K16653, KAKENHI-PROJECT-17H06110, KAKENHI-PROJECT-19K15704
[Journal Article] Large-Scale Screening and Identification of Novel Pathogenic Staphylococcus aureus Genes Using a Silkworm Infection Model2020
- Author(s)
  Paudel Atmika、Hamamoto Hiroshi、Panthee Suresh、Matsumoto Yasuhiko、Sekimizu Kazuhisa
- Journal Title
  
  The Journal of Infectious Diseases
  
  Volume: - Issue: 11 Pages: 1795-1804
- DOI
  10.1093/infdis/jiaa004
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07140, KAKENHI-PROJECT-15H05783, KAKENHI-PROJECT-19K16653
[Journal Article] COVID-19: the current situation in Nepal2020
- Author(s)
  Bimala Panthee, Saraswati Dhungana, Nirmal Panthee, Atmika Paudel, Saroj Gyawali, Suresh Panthee
- Journal Title
  
  New microbes and new infections
  
  Volume: 37 Pages: 100737-100737
- DOI
  10.1016/j.nmni.2020.100737
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16653
[Journal Article] Serum proteins potentiate therapeutic efficacy of lysocin E against S. aureus2020
- Author(s)
  Hiroshi Hamamoto, Suresh Panthee, Atmika Paudel, Kenichi Ishii, Jyunichiro Yasukawa, Su Jie, Hiroaki Itoh, Kotaro Tokumoto, Masayuki Inoue, Kazuhisa Sekimizu
- Journal Title
  
  ResearchSquare
  
  Volume: NA
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16653
[Journal Article] Complete Genome Sequence of Weissella hellenica 0916-4-2 and Its Comparative Genomic Analysis2019
- Author(s)
  Panthee Suresh、Paudel Atmika、Blom Jochen、Hamamoto Hiroshi、Sekimizu Kazuhisa
- Journal Title
  
  Frontiers in Microbiology
  
  Volume: 10 Pages: 1619-1619
- DOI
  10.3389/fmicb.2019.01619
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07140, KAKENHI-PROJECT-15H05783, KAKENHI-PROJECT-17F17421, KAKENHI-PROJECT-19K16653
[Journal Article] Uncovering Staphylococcus aureus genes with roles in pathogenicity by silkworm infection model2019
- Author(s)
  Atmika Paudel, Hiroshi Hamamoto, Suresh Panthee, Yasuhiko Matsumoto, Kazuhisa Sekimizu
- Journal Title
  
  BioRxiv
  
  Volume: NA Pages: 714725-714725
- DOI
  10.1101/714725
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16653
[Journal Article] GPI0363 inhibits the interaction of RNA polymerase with DNA in Staphylococcus aureus2019
- Author(s)
  Paudel Atmika、Panthee Suresh、Hamamoto Hiroshi、Sekimizu Kazuhisa
- Journal Title
  
  RSC Advances
  
  Volume: 9 Issue: 65 Pages: 37889-37894
- DOI
  10.1039/c9ra06844a
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07140, KAKENHI-PROJECT-15H05783, KAKENHI-PROJECT-19K16653
[Journal Article] Development of a high-throughput strategy for discovery of potent analogues of antibiotic lysocin E2019
- Author(s)
  Hiroaki Itoh, Kotaro Tokumoto, Takuya Kaji, Atmika Paudel, Suresh Panthee, Hiroshi Hamamoto, Kazuhisa Sekimizu, Masayuki Inoue
- Journal Title
  
  Nature Communications
  
  Volume: 10 Issue: 1 Pages: 2992-2992
- DOI
  10.1038/s41467-019-10754-4
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K15704, KAKENHI-PROJECT-15H05783, KAKENHI-PROJECT-17H06110, KAKENHI-PROJECT-19K16653
[Presentation] Cryptococcus neoformans の病原性因子の網羅的探索2020
- Author(s)
  浜本洋、石島早苗、スレスパンシー、アトミカパウデル、関水和久
- Organizer
  第64回日本医真菌学会総会・学術集会
- Data Source
  KAKENHI-PROJECT-19K16653
[Presentation] Discovering novel roles of genes for virulence of Staphylococcus aureus USA300 using invertebrate model silkworm2019
- Author(s)
  Suresh Panthee, Hiroshi Hamamoto, Atmika Paudel, Kazuhisa Sekimizu
- Organizer
  ASM Microbe 2019, 2019 Jun 20-24, San Francisco, CA (USA)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16653
[Presentation] Comprehensive gene expression analysis of Cryptococcus neoformans infected in mouse brain2019
- Author(s)
  Hiroshi Hamamoto, Sanae Ishijima, Suresh Panthee, Paudel Atmika, Kazuhisa Sekimizu
- Organizer
  ASM Microbe 2019, 2019 Jun 20-24, San Francisco, CA (USA)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16653
[Presentation] Cryptococcus neoformansのマウス感染状態における網羅的遺伝子発現解析2019
- Author(s)
  浜本洋、Suresh Panthee、Atmika Paudel、石島早苗、関水和久
- Organizer
  第63回日本医真菌学会総会、2019年10月11日、千葉市（オークラ千葉ホテル
- Data Source
  KAKENHI-PROJECT-19K16653
[Presentation] 黄色ブドウ球菌の宿主感染後の時間経過に伴う網羅的遺伝子発現変化の解析2019
- Author(s)
  浜本洋、Suresh Panthee、Atmika Paudel、関水和久
- Organizer
  第64回　日本ブドウ球菌研究会、2019年8月30日-31日、佐世保市（長崎国際大学）
- Data Source
  KAKENHI-PROJECT-19K16653

1. HAMAMOTO Hiroshi

# of Collaborated Projects: 0 results

# of Collaborated Products: 8 results
2. 東秀明

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
3. 伊藤寛晃

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Paudel Atmika PAUDEL ATMIKA

Research Projects

Research Products

Co-Researchers

Identification of genetic basis of virulence determinants of emerging Bacillus cereus ST1420 using silkworm modelPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Identification and characterization of novel virulence factors of Staphylococcus aureus USA300 using silkworm model.Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Clonal relationship between multidrug-resistant Escherichia coli ST69 from poultry and humans in Lusaka, Zambia2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Complete Genome Sequences of 24 Strains of Bacillus cereus Isolated from Nosocomial Infection and Bacteremia Cases in Japan2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Direct Regulons of AtxA, the Master Virulence Regulator of Bacillus anthracis2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] YjbH regulates virulence genes expression and oxidative stress resistance in Staphylococcus aureus2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Comparative analysis of COVID‐19 case fatality rate between two waves in Nepal2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Complete genome sequence and comparative genomic analysis of Enterococcus faecalis EF-2001, a probiotic bacterium2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Novel chromosomal insertions of ISEcp1-bla CTX-M-15 and diverse antimicrobial resistance genes in Zambian clinical isolates of Enterobacter cloacae and Escherichia coli2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Novel Pathogenic Mucorales Identified Using the Silkworm Infection Model2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Novel chromosomal insertions of ISEcp1-blaCTX-M-15 and diverse antimicrobial resistance genes in Zambian clinical isolates of Enterobacter cloacae and Escherichia coli2021

Author(s)

Journal Title

Data Source

[Journal Article] Silkworm model for Bacillus anthracis infection and virulence determination2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Serum apolipoprotein A-I potentiates the therapeutic efficacy of lysocin E against Staphylococcus aureus2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The Role of Amino Acid Substitution in HepT Toward Menaquinone Isoprenoid Chain Length Definition and Lysocin E Sensitivity in Staphylococcus aureus2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Clinical and epidemiological features of COVID-19 deaths in Nepal2020

Author(s)

Journal Title

DOI

Data Source