Kikuchi Takeshi 菊地武司

… Alternative Names

KIKUCHI Takeshi 菊地武司

TAKESHI Kikuchi 菊地武司

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Researcher Number	90195206
Other IDs
External Links
Affiliation (Current)	2025: 立命館大学, 生命科学部, 授業担当講師
Affiliation (based on the past Project Information) *help	2021 – 2023: 立命館大学, 生命科学部, 教授 2014 – 2016: 立命館大学, 生命科学部, 教授 2008: Ritsumeikan University, 生命科学部, 教授 2007: Ritsumeikan University, 情報理工学部, 教授 2000 – 2002: 倉敷芸術科学大学, 産業科学技術学部, 教授
Review Section/Research Field	Principal Investigator Biological Sciences / Basic Section 62010:Life, health and medical informatics-related / Biophysics / Life / Health / Medical informatics / 基礎ゲノム科学 Except Principal Investigator 高分子構造・物性(含繊維)
Keywords	Principal Investigator 構造予測 / フォールディング / コンタクトマップ / タンパク立体構造 / 残基間平均距離統計 / ORF / ドメイン領域 / 平均距離マップ / ゲノム情報科学 / Covid-19 … More / 創薬 / 自由エネルギー不等式 / SARS-CoV-2 / 陽溶媒 / RISM理論 / ファインマン自由エネルギー不等式 / 結合自由エネルギー / Real Chain / Monte Carlo Simulation / Pair Correlation Function / Folding / Effective Potential / Denatured State / Interresidue Average Distance / Structure Prediction / モンテカルロシミュレーンョン / フォールディシグ / 実在鎖 / モンテカルロシミュレーション / 残基間対相関関数 / 有効残基間ポテンシャル / 変性状態 / アミノ酸間平均距離統計 / タンパク立体構造予測 / Ｇｏモデル / 分子動力学 / Goモデル / 平均距離統計 / 配列解析 / フォールディング機構 / 配列相同タンパク質 / Ｇｏモデル / 進化的保存疎水残基 / フォールディング部位 / タンパク質立体構造 / アミノ酸配列相同性 / ADM / 疎水性パッキング / 残基対コンタクト / 立体構造形成 / モンテカルロ法 / φ値解析 / 立体構造形成部位 / 残基対コンタクト頻度 / タンパク構造予測 / バイオインフォマティクス … More Except Principal Investigator Biological Functionality / Molecular Assembly / Thermal Hystereisis Behavior / Molecular Simulation / Structural Analysis / Spectroscopic Properties / Chitosan-Iodine Compley / Polysaccharide / 温度履歴挙動 / 生理機能 / 分子集合 / 熱履歴挙動 / 分子シミュレーション / 構造解析 / 分光特性 / キトサン・ヨウ素錯体 / 多糖類 Less

Development of protein-ligand binding free energy prediction technique based on free energy inequalityPrincipal Investigator
- Principal Investigator
  
  KIKUCHI Takeshi
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Ritsumeikan University
Folding principle of proteins with different 3D structures in spite of high sequence identiryPrincipal Investigator
- Principal Investigator
  
  Kikuchi Takeshi
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Ritsumeikan University
Prediction of protein folding sites based on the interresidue average distance statisticsPrincipal Investigator
- Principal Investigator
  
  KIKUCHI Takeshi
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  Ritsumeikan University
タンパクのアミノ酸間平均距離統計を用いたゲノム配列解析法の開発Principal Investigator
- Principal Investigator
  
  菊地武司
- Project Period (FY)
  2001
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  Kurashiki University of Science and the Arts
タンパク質のアミノ酸間平均距離統計を用いたゲノム配列解析法の開発Principal Investigator
- Principal Investigator
  
  菊地武司
- Project Period (FY)
  2000 – 2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  Kurashiki University of Science and the Arts
Investigation of the Supramolecular Formation and Temperature Hysteresis Behavior of Chitosan-Iodine Complex and the Evaluation of Its Biological functionality
- Principal Investigator
  
  HIROFUMI Yajima
- Project Period (FY)
  2000 – 2001
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  高分子構造・物性(含繊維)
- Research Institution
  Tokyo University of Science
Development of a method to predict protein 3D structures based on correlations of distances between amino acids in proteinsPrincipal Investigator
- Principal Investigator
  
  KIKUCHI Takeshi
- Project Period (FY)
  2000 – 2002
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  Kurashiki University of Science and the Arts

All 2022 2021 2017 2016 2015 2014 2009 2008 2007

All Journal Article Presentation

[Journal Article] Decoding an Amino Acid Sequence to Extract Information on Protein Folding2022
- Author(s)
  Kikuchi Takeshi
- Journal Title
  
  Molecules
  
  Volume: 27 Issue: 9 Pages: 3020-3020
- DOI
  10.3390/molecules27093020
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K12130
[Journal Article] Properties of Amino Acid Sequences of Lysozyme-Like Superfamily Proteins Relating to Their Folding Mechanisms.2017
- Author(s)
  Takuto Nakashima, Michirou Kabata, and Takeshi Kikuchi
- Journal Title
  
  Journal of Proteomics & Bioinformatics
  
  Volume: 10 Issue: 4 Pages: 94-107
- DOI
  10.4172/jpb.1000429
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26330335
[Journal Article] Implication of the cause of differences in 3D structures of proteins with high sequence identity based on analyses of amino acid sequences and 3D structures2014
- Author(s)
  Masanari Matsuoka, Masatake Sugita, Takeshi Kikuchi
- Journal Title
  
  BMC Research Notes
  
  Volume: 7 Issue: 1 Pages: 654-654
- DOI
  10.1186/1756-0500-7-654
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-13J09198, KAKENHI-PROJECT-26330335
[Journal Article] Spin correlations in a no frustrated one-dimensional spin system and the formation of the ground state as a model of protein folding2009
- Author(s)
  Takeshi Kikuchi
- Journal Title
  
  Physica A : Statistical Mechanics and its Applications 388
  
  Pages: 129-136
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19510202
[Journal Article] Analysis of 3D structural differences in the IgG-binding domains based on the interresidue average-distance statistics2008
- Author(s)
  Takeshi Kikuchi
- Journal Title
  
  Amino Acids 5
  
  Pages: 541-549
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19510202
[Journal Article] Analysis of 3D structural differences in the IgG binding domains based on the average-distance statistics2008
- Author(s)
  Takeshi Kikuchi
- Journal Title
  
  Amino Acids (掲載確定)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19510202
[Journal Article] Prediction of Protein Folding Properties Based on Interresidue Average Distance Statistics2007
- Author(s)
  Takeshi Kikuchi
- Journal Title
  
  the 10th International Congress on Amino Acids and Proteins(ICAAP)(August 2007, Kallithea, Greece)Amino Acids 33
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] Estimation of relative binding free energy based on a free energy for the cyclin dependent　kinase2- ligand system2021
- Author(s)
  新大樹　菊地武司
- Organizer
  生物物理学会
- Data Source
  KAKENHI-PROJECT-21K12130
[Presentation] Estimation of relative binding free enrgy based on a free energy inequality for the Checkopoint kinase1-ligand system2021
- Author(s)
  芝原慶太　菊地武司
- Organizer
  生物物理学会
- Data Source
  KAKENHI-PROJECT-21K12130
[Presentation] Decoding Protein Sequencesto Extract Information of Folding Nuclei2017
- Author(s)
  Takeshi Kikuchi
- Organizer
  Protein & Peptide Conference (PepCon-2017)
- Place of Presentation
  ヒルトン福岡シーホーク（福岡県博多市）
- Year and Date
  2017-03-24
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26330335
[Presentation] Sequence analysis on the information of folding nuclei in proteins with interesting 3D properties2016
- Author(s)
  Takeshi Kikuchi
- Organizer
  Frontier of Structural Biology 2016
- Place of Presentation
  New Orleans（USA)
- Year and Date
  2016-08-22
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26330335
[Presentation] Lysozyme superfamilyにおけるフォールディング機構保存性の、残基間距離の統計情報を用いた予測2016
- Author(s)
  中島拓飛、加畑通朗、菊地武司
- Organizer
  第16回日本蛋白質科学会年会
- Place of Presentation
  福岡国際会議場（福岡県博多市）
- Year and Date
  2016-06-07
- Data Source
  KAKENHI-PROJECT-26330335
[Presentation] β-Trefoilタンパクのフォールディングに重要な残基に関する残基間平均距離統計に基づく解析2016
- Author(s)
  桐岡拓也、菊地武司
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場（茨城県つくば市）
- Year and Date
  2016-11-25
- Data Source
  KAKENHI-PROJECT-26330335
[Presentation] β-Trefoilタンパクのフォールディングに重要な残基に関する残基間平均距離統計に基づく解析2016
- Author(s)
  桐岡拓也、菊地武司
- Organizer
  第16回日本蛋白質科学会年会
- Place of Presentation
  福岡国際会議場（福岡県博多市）
- Year and Date
  2016-06-08
- Data Source
  KAKENHI-PROJECT-26330335
[Presentation] Lysozyme スーパーファミリーのアミノ酸配列解析によるフォールディング領域予測2016
- Author(s)
  中島拓飛、加畑通朗、菊地武司
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場（茨城県つくば市）
- Year and Date
  2016-11-25
- Data Source
  KAKENHI-PROJECT-26330335
[Presentation] 高い配列相同性を持ちながら異なる立体構造を持つタンパク質のアミノ酸配列と立体構造に基づく解析2015
- Author(s)
  大西晃平、松岡雅成、杉田昌岳、菊地武司
- Organizer
  第53回日本生物物理学会年会
- Place of Presentation
  金沢大学角間キャンパス（石川県金沢市）
- Year and Date
  2015-09-14
- Data Source
  KAKENHI-PROJECT-26330335
[Presentation] TM1457 におけるアミノ酸配列と立体構造との関連2015
- Author(s)
  大西晃平、菊地武司
- Organizer
  第１５回日本蛋白質科学会年会
- Place of Presentation
  あわぎんホール（徳島県徳島市）
- Year and Date
  2015-06-25
- Data Source
  KAKENHI-PROJECT-26330335
[Presentation] Analysis of the effect of amino acid mutations on the protein folding segments by means of sequence and evolutionary analyses2014
- Author(s)
  松岡雅成　菊地武司
- Organizer
  日本生物物理学会第52回年会
- Place of Presentation
  札幌コンベンションセンター（北海道）
- Year and Date
  2014-09-25
- Data Source
  KAKENHI-PROJECT-26330335
[Presentation] 自由エネルギー変分原理を用いたFKBP阻害剤の結合自由エネルギーの予測とリガンドの分類2008
- Author(s)
  南康智、菊地武司
- Organizer
  日本生物物理学会第46回年会講演予稿集S28
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] 自由エネルギー変分原理に基づくFKBP(免疫抑制剤結合タンパク質)阻害剤の結合自由エネルギーの予測2008
- Author(s)
  南康智, 菊地武司
- Organizer
  第8回日本蛋白質科学会
- Place of Presentation
  タワーホール船橋(東京)
- Year and Date
  2008-06-10
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] 自由エネルギー変分原理を用いたFKBP阻害剤の結合エネルギー予測とリガンドの分類2008
- Author(s)
  南康智, 菊地武司
- Organizer
  第46回に本生物物理学会年会
- Place of Presentation
  福岡国際会議場(福岡)
- Year and Date
  2008-12-03
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] グロビンフォールドへリックスE-H単位の立体構造の普遍性について2008
- Author(s)
  永岡清秀、菊地武司
- Organizer
  第8回日本蛋白質科学会年会講演要旨集p64
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] グロビンフォールドヘリックスE-H単位の立体構造の普遍性について2008
- Author(s)
  永岡清秀, 菊地武司
- Organizer
  第8回日本蛋白質科学会
- Place of Presentation
  タワーホール船橋(東京)
- Year and Date
  2008-06-10
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] グロビンフォールドへリックスE-H単位の立体構造の普遍性-残基間平均距離を用いた解析2008
- Author(s)
  菊地武司
- Organizer
  日本生物物理学会第46回年会講演予稿集S22
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] グロビンフォールドヘリックスE-H単位の立体構造の普遍性-残基間平均距離を用いた解析-2008
- Author(s)
  菊地武司
- Organizer
  第46回に本生物物理学会年会
- Place of Presentation
  福岡国際会議場(福岡)
- Year and Date
  2008-12-03
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] 自由エネルギー変分原理に基づくFKBP(免疫抑制剤結合タンパク質)阻害剤の結合自由エネルギーの予測2008
- Author(s)
  南康智、菊地武司
- Organizer
  第8回日本蛋白質科学会年会講演要旨集p62
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] 自由エネルギー変分原理の基づくジヒドロ葉酸還元酵素阻害剤の相対的結合自由エネルギー計算2007
- Author(s)
  坂本龍則、菊地武司
- Organizer
  日本生物物理学会第45回年会講演予稿集S26
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] Prediction of Protein Folding Properties Based on Interresidue Average Distance Statistics2007
- Author(s)
  Takeshi Kikuchi
- Organizer
  the 10th International Congress on Amino Acids and Proteins
- Place of Presentation
  Kallithea, Greece
- Year and Date
  2007-08-23
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] IgG結合ドメインの立体構造の違いについて-残基間平均距離に基づく解析-2007
- Author(s)
  菊地武司
- Organizer
  日本生物物理学会第45回年会講演予稿集S27
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] 自由エネルギー変分原理を用いた相対的結合自由エネルギー計算とジヒドロ葉酸還元酵素阻害剤への応用2007
- Author(s)
  新江雄一、菊地武司
- Organizer
  第7回蛋白質科学会講演要旨集
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] 自由エネルギー変分原理を用いた相対的結合自由エネルギー計算とジヒドロ葉酸還元酵素阻害剤への応用2007
- Author(s)
  新江雄一、菊地武司
- Organizer
  第7回日本蛋白質科学会年会
- Place of Presentation
  仙台
- Year and Date
  2007-05-25
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] Prediction of protein folding properties based on interresidue average distance statistics2007
- Author(s)
  Takeshi Kikuchi
- Organizer
  International Conference of Amino acid and Porteins
- Place of Presentation
  Tessalloniki, Greece
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] 自由エネルギー変分原理に基づく相対的結合自由エネルギー計算とそのFK506結合タンパク阻害剤への応用2007
- Author(s)
  新江雄一、南康智、菊地武司
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-22
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] 自由エネルギー変分原理の基づく相対的結合自由エネルギー計算とそのFKBP結合タンパク阻害剤への応用2007
- Author(s)
  新江雄一、菊地武司
- Organizer
  日本生物物理学会第45回年会講演予稿集S114
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] IgG結合ドメインの立体構造の違いについて-残基間平均距離統計に基づく解析2007
- Author(s)
  菊地武司
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] 残基間平均距離統計ポテンシャルによるIgG結合ドメイン類縁蛋白の構造の差異に関する解析2007
- Author(s)
  菊地武司、原田織江
- Organizer
  第7回日本蛋白質科学会年会
- Place of Presentation
  仙台
- Year and Date
  2007-05-25
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] 自由エネルギー変分原理に基づくジヒドロ葉酸還元酵素の相対結合自由エネルギー計算2007
- Author(s)
  坂本龍則、菊地武司
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-19510202
[Presentation] 残基間平均距離統計ポテンシャルによるIgG結合ドメイン類縁タンパクの構造の差異に関する解析2007
- Author(s)
  原田織江、菊地武司
- Organizer
  第7回蛋白質科学会講演要旨集
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-19510202

1. HIROFUMI Yajima (10147506)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. HITOSHI Sashiwa (20205884)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. FUMIO Fukai (90124487)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Kikuchi Takeshi 菊地 武司

KIKUCHI Takeshi 菊地 武司

TAKESHI Kikuchi 菊地 武司

Research Projects

Research Products

Co-Researchers

Development of protein-ligand binding free energy prediction technique based on free energy inequalityPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Folding principle of proteins with different 3D structures in spite of high sequence identiryPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Prediction of protein folding sites based on the interresidue average distance statisticsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

タンパクのアミノ酸間平均距離統計を用いたゲノム配列解析法の開発Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

タンパク質のアミノ酸間平均距離統計を用いたゲノム配列解析法の開発Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Investigation of the Supramolecular Formation and Temperature Hysteresis Behavior of Chitosan-Iodine Complex and the Evaluation of Its Biological functionality

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Development of a method to predict protein 3D structures based on correlations of distances between amino acids in proteinsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Decoding an Amino Acid Sequence to Extract Information on Protein Folding2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Properties of Amino Acid Sequences of Lysozyme-Like Superfamily Proteins Relating to Their Folding Mechanisms.2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Implication of the cause of differences in 3D structures of proteins with high sequence identity based on analyses of amino acid sequences and 3D structures2014

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Spin correlations in a no frustrated one-dimensional spin system and the formation of the ground state as a model of protein folding2009

Author(s)

Journal Title

Data Source

[Journal Article] Analysis of 3D structural differences in the IgG-binding domains based on the interresidue average-distance statistics2008

Author(s)

Journal Title

Data Source

[Journal Article] Analysis of 3D structural differences in the IgG binding domains based on the average-distance statistics2008

Author(s)

Journal Title

Data Source

[Journal Article] Prediction of Protein Folding Properties Based on Interresidue Average Distance Statistics2007

Author(s)

Journal Title

Data Source

[Presentation] Estimation of relative binding free energy based on a free energy for the cyclin dependent kinase2- ligand system2021

Kikuchi Takeshi 菊地武司

KIKUCHI Takeshi 菊地武司

TAKESHI Kikuchi 菊地武司

[Presentation] Estimation of relative binding free energy based on a free energy for the cyclin dependent　kinase2- ligand system2021