Nakamura Shugo 中村周吾

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NAKAMURA Shugo 中村周吾

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Researcher Number	90272442
Other IDs
External Links
Affiliation (Current)	2025: 東洋大学, 情報連携学部, 教授
Affiliation (based on the past Project Information) *help	2024: 東洋大学, 情報連携学部, 教授 2007 – 2011: The University of Tokyo, Graduate School of Agricultural and Life Sciences, Associate Professor 2006: 東京大学, 大学院農学生命科学研究科, 助教授 2001 – 2005: Graduate School of Agriculture and Life Sciences, THE UNIVERSITY OF TOKYO, RESEARCH ASSOCIATE, 大学院・農学生命科学研究科, 助教授 1998 – 2000: 東京大学, 大学院・農学生命科学研究科, 助手
Review Section/Research Field	Principal Investigator Bioinformatics/Life informatics / Basic Section 62010:Life, health and medical informatics-related / Biophysics / Biophysics Except Principal Investigator Biological Sciences / Science and Engineering / 計算機科学 / Bioinformatics/Life informatics
Keywords	Principal Investigator タンパク質 / 立体構造予測 / ディスオーダー / 構造予測 / ダイナミクス / 核酸 / 天然変性タンパク質 / folding / generalized ensemble method / mini hairpin molecule … More / nucleic acids / マルチカノニカル分子動力学法 / フォールディング / 拡張アンサンブル法 / ミニヘアピン分子 / 局所構造情報 / シミュレーション / 蛋白質 / ディスオーダー蛋白質 / コンピュータシミュレーション / SVM / タンパク質ループ領域 / 局所配列構造相関 / 機能予測 / トランスファーRNA / 並列計算技術 / 複合体 … More Except Principal Investigator 構造予測 / 生体生命情報学 / 並列計算 / タンパク質 / プロテオーム / 蛋白質 / 資源管理 / ミドルウェア / グリッドコンピューティング / 分散共有メモリ / 統計ポテンシャル / 分子動力学法 / 分子間相互作用 / バイオインフォマティクス / BLOSUM / アミノ酸配列 / 大規模並列計算機 / computational chemistry / molecular dynamics / scheduling / processor allocation / parallel programming environment / parallel computing / 分子動力学シミュレーション / 科学技術計算 / 計算化学 / 分子動力学計算 / スケジューリング / プロセッサ割当て / MPI / 並列プログラミング環境 / 構造精密化 / 構造評価 / 分子動力学 / 複合体 / 機能予測 / フラグメントアセンブリ方式 / ホモロジーモデリング / 遺伝子クラスタリング / 二次構造 / molecular dynamics simulation / protein structure assessment / protein structure refinement / protein structure prediction / proteome / bioinformatics / 蛋白質構造評価 / 蛋白質構造精密化 / 蛋白質構造予測 / MP1 / エネルギー最小化計算 / 分子動力学シュミレーション / 動的資源管理 / MPI (Message Passing Interface) / スレープ方式 / マスタ / 大規模並列システム / 空間分割法 / ブロテオーム / 不規則領域 / ネットワーク / ソフトウェア学 / ハイパフォーマンス・コンピューティング / マルチカノニカル法 / アビニシオ法 / 構造クラスタリング / ab initio法 / 配列類似度 / 並列計算環境 / 分子シミュレーション / 尿素 / 変性剤 / 疎水性相互作用 / 疎水効果 Less

Prediction of Complex Structures of Intrinsically Disordered Proteins by Deep Learning Techniques Considering Dynamics InformationPrincipal Investigator
- Principal Investigator
  
  中村周吾
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Toyo University
Comprehensive analysis of the structural information of disorder proteins using computersPrincipal Investigator
- Principal Investigator
  
  NAKAMURA Shugo
- Project Period (FY)
  2009 – 2011
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo
タンパク質相互作用のネットワーク予測から原子レベルの結合予測までの統合的研究
- Principal Investigator
  
  清水謙太郎 (清水謙多郎)
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Database Development and Functional Analysis of Protein Disorder Regions
- Principal Investigator
  
  SHIMIZU Kentaro
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo
Development of protein function prediction system based on local sequence-structure relationshipsPrincipal Investigator
- Principal Investigator
  
  NAKAMURA Shugo
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo
高精度のドッキング機能を有するタンパク質間相互作用予測システムの開発
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
高精度のドッキング機能を有するタンパク質間相互作用予測システムの開発
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Development of methods for high-resolution protein structure modeling and for model structure assessment
- Principal Investigator
  
  SHIMIZU Kentaro
- Project Period (FY)
  2005 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo
ホモロジーモデリングとアビニシオ法の統合による高精度タンパク質構造予測手法の開発
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
大規模分散データの真に透過で効率的な共有を実現する分散共有配列システムの開発
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  The University of Tokyo
Analysis of stability and dynamics of tertiary structure of nucleic acid molecules by using computer simulationPrincipal Investigator
- Principal Investigator
  
  NAKAMURA Shugo
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  The University of Tokyo
ホモロジーモデリングとアビニシオ法の統合による高精度タンパク質構造予測手法の開発
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2003
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
大規模分散データの効率的な共有を実現する並列コンピューティング環境の開発
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2003
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  The University of Tokyo
タンパク質の局所構造情報を利用したab initio立体構造・機能予測手法の開発
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
大規模分散データの効率的な共有を実現する並列コンピューティング環境の開発
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  The University of Tokyo
タンパク質の局所構造情報を利用したab initio立体構造・機能予測手法の開発
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2001
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
大規模分散データの効率的な共有を実現する並列コンピューティング環境の開発
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2001
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Science and Engineering
- Research Institution
  The University of Tokyo
並列計算技術を用いたタンパク質・核酸複合体のダイナミクスの解析Principal Investigator
- Principal Investigator
  
  中村周吾
- Project Period (FY)
  2001 – 2002
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Biophysics
- Research Institution
  The University of Tokyo
タンパク質の局所構造情報を利用したab initio立体構造・機能予測手法の開発
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2000
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Development of a Parallel Programming Environment with Dynamic Resource Management Facilities
- Principal Investigator
  
  SHIMIZU Kentaro
- Project Period (FY)
  1999 – 2001
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  計算機科学
- Research Institution
  THE UNIVERSITY OF TOKYO
蛋白質の安定性・折れたたみ機構における水・変性剤の分子メカニズム
- Principal Investigator
  
  池口満徳
- Project Period (FY)
  1998
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Research Institution
  The University of Tokyo
Efficient Processor Allocation Policies for Massively Parallel Systems
- Principal Investigator
  
  SHIMIZU Kentaro
- Project Period (FY)
  1998 – 2000
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  計算機科学
- Research Institution
  THE UNIVERSITY OF TOKYO

All 2012 2011 2010 2009 2008 2007 2006 2005 2004 Other

All Journal Article Presentation Book

[Book] タンパク質のab initio構造予測2009
- Author(s)
  中村周吾
- Total Pages
  6
- Publisher
  メディカルドゥ
- Data Source
  KAKENHI-PROJECT-20500269
[Book] 遺伝子医学MOOK14次世代創薬テクノロジー実践:インシリコ創薬の最前線(タンパク質のabinitio構造予測)2009
- Author(s)
  中村周吾,清水謙多郎
- Publisher
  メディカルドゥ
- Data Source
  KAKENHI-PROJECT-20500269
[Book] タンパク質のab initio構造予測2009
- Author(s)
  中村周吾
- Total Pages
  6
- Publisher
  メディカルドゥ
- Data Source
  KAKENHI-PROJECT-20016006
[Journal Article] Blind prediction of quaternary structures of homo-oligomeric proteins from amino acid sequences based on templates2012
- Author(s)
  M. Morita, M. Kakuta, K. Shimizu, S. Nakamura
- Journal Title
  
  J. Proteome Sci. Comput. Biol.
  
  Volume: 1
- URL
  http://www.hoajonline.com/jpscb/1/1/1
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21500289
[Journal Article] Prospects for tertiary structure prediction of RNA basea on secondary structure information2012
- Author(s)
  S.Yamasaki, S.Nakamura, K.Fukui
- Journal Title
  
  J.Chem.Inf.Model.
  
  Volume: 52 Issue: 2 Pages: 557-567
- DOI
  10.1021/ci2003413
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21500289, KAKENHI-PROJECT-22700317
[Journal Article] Prediction of N-myristoylation modification of proteins by SVM2011
- Author(s)
  W.Cao, K.Sumikoshi, S.Nakamura, T.Terada, K.Shimizu
- Journal Title
  
  Bioinformation
  
  Volume: 6 Pages: 204-206
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21500289
[Journal Article] Mutually exclusive expression of Gaia and Ga14 reveals diversification of taste receptor cells in zebrafish2011
- Author(s)
  M.Ohmoto, S.Okada, S.Nakamura, K.Abe, I.Matsumoto
- Journal Title
  
  J.Comp.Neurol.
  
  Volume: 519 Issue: 8 Pages: 1616-1629
- DOI
  10.1002/cne.22589
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21500289, KAKENHI-PROJECT-23248058, KAKENHI-PROJECT-23688016
[Journal Article] Prediction of N-myristoylation modification of proteins by SVM2011
- Author(s)
  W. Cao, K. Sumikoshi, S. Nakamura, T. Terada, K. Shimizu
- Journal Title
  
  Bioinformation
  
  Volume: 6(5) Pages: 204-206
- URL
  http://www.bioinformation.net/006/97320630006204.pdf
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21500289
[Journal Article] Protein-Protein Docking Using Multi-layered Spherical Basis Functions2011
- Author(s)
  K.Sumikoshi, T.Terada, S.Nakamura, K.Shimizu
- Journal Title
  
  Proceedings of the 2011 International Conference on Bioscience, Biochemistry and Bioinformatics
  
  Pages: 342-347
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Protein-protein docking using multi-layered spherical basis functions2011
- Author(s)
  K. Sumikoshi, T. Terada, S. Nakamura, K. Shimizu
- Journal Title
  
  Int. Proc. Chem., Biol. Environ. Eng.
  
  Volume: 5 Pages: 342-347
- URL
  http://www.ipcbee.com/vol5/76-X10027.pdf
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21500289
[Journal Article] BUDDY-system : A web site for constructing a dataset of protein pairs between ligand-bound and unbound states2011
- Author(s)
  M. Morita, T. Terada, S. Nakamura, K. Shimizu
- Journal Title
  
  BMC Res. Notes
  
  Volume: 4 Issue: 1 Pages: 143-143
- DOI
  10.1186/1756-0500-4-143
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21500289, KAKENHI-PROJECT-23300109
[Journal Article] Protein-protein docking using multi-layered spherical basis functions2011
- Author(s)
  K.Sumikoshi, T.Terada, S.Nakamura, K.Shimizu
- Journal Title
  
  Int.Proc.Chem., Biol.Environ.Eng.
  
  Volume: 5 Pages: 342-347
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21500289
[Journal Article] Prediction of carbohydrate-binding proteins from sequences using support vector machines2010
- Author(s)
  S.Someya, M.Kakuta, M.Morita, K. Sumikoshi, W.Cao, Z.Ge, O.Hirose, S.Nakamura, T.Terada, K.Shimizu
- Journal Title
  
  Adv.Bioinform.
  
  Volume: ArticleID:289301
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21500289
[Journal Article] Prediction of carbohydrate-binding proteins from sequences using support vector machines2010
- Author(s)
  S. Someya, M. Kakuta, M. Morita, K. Sumikoshi, W. Cao, Z. Ge, O. Hirose, S. Nakamura, T. Terada, K. Shimizu
- Journal Title
  
  Adv. Bioinform.
  
  Volume: 2010 Pages: 1-9
- DOI
  10.1155/2010/289301
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21500289
[Journal Article] Prediction of carbohydrate-binding proteins from sequences using support vector machines.2010
- Author(s)
  S.Someya, M.Kakuta, M.Morita, K.Sumikoshi, W.Cao, Z.Ge, O.Hirose, S.Nakamura, T.Terada, K.Shimizu
- Journal Title
  
  Advances in Bioinformatics
  
  Pages: 289301-289301
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Comprehensive analysis of sequence-structure relationships in the loop regions of proteins2009
- Author(s)
  S.Nakamura
- Journal Title
  
  GIW 2009
  
  Volume: 23 Pages: 106-116
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Comprehensive analysis of sequence-structure relationships in the loop regions of proteins2009
- Author(s)
  中村周吾
- Journal Title
  
  Genome Informatics 23
  
  Pages: 106-116
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21500289
[Journal Article] Comprehensive analysis of sequence-structure relationships in the loop regions of proteins2009
- Author(s)
  S.Nakamura, K.Shimizu
- Journal Title
  
  GIW 2009 23
  
  Pages: 106-116
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Computational Protocol for Screening GPI-anchored Proteins, Proceedings of the First International Conference on Bioinformatics and Computational Biology (BICoB)2009
- Author(s)
  W.Cao, K.Sumikoshi, T.Terada, S.Nakamura, K.Kitamoto, K.Shimizu
- Journal Title
  
  Springer Lecture Notes in Bioinformatics Series 5462
  
  Pages: 164-175
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Computational Protocol for Screening GPI-anchored Proteins, Proceedings of the First International Conference on Bioinformatics and Computational Biology (BICoB) 20092009
- Author(s)
  W. Cao, K. Sumikoshi, T. Terada, S. Nakamura, K. Kitamoto, K. Shimizu
- Journal Title
  
  Springer Lecture Notes in Bioinformatics Series (in press)
- Data Source
  KAKENHI-PROJECT-19500251
[Journal Article] Anti-metatype peptides, a molecular tool with high sensitivity and specificity to monitor small ligands2009
- Author(s)
  J. Inaba, S. Nakamura, K. Shimizu, T. Asami, Y. Suzuki
- Journal Title
  
  Anal. Biochem. 388(1)
  
  Pages: 63-70
- Data Source
  KAKENHI-PROJECT-19500251
[Journal Article] Computational Protocol for Screening GPI-anchored Proteins2009
- Author(s)
  Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Katsuhiko Kitamoto, Kentaro Shimizu
- Journal Title
  
  Proceedings of the First International ConBerence onBioinlbrmatics and Computational Biology (掲載確定)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016006
[Journal Article] Comprehensive analysis of sequence-structure relationships in the loop regions of proteins2009
- Author(s)
  S. Nakamura, K. Shimizu
- Journal Title
  
  Genome Inform.
  
  Volume: 23(1) Pages: 106-116
- URL
  http://giw.hgc.jp/giw2009/pdf/33-Nakamura.pdf
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21500289
[Journal Article] Anti-metatype peptides, a molecular tool with high sensitivity and specificity to monitor small ligands.2009
- Author(s)
  J. Inaba, S. Nakamura, K. Shimizu, T. Asami, Y. Suzuki
- Journal Title
  
  Analytical Biochemistry 388
  
  Pages: 63-70
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500251
[Journal Article] Comprehensive analysis of sequence-structure relationships in the loop regions of proteins2009
- Author(s)
  S.Nakamura
- Journal Title
  
  GIW 2009
  
  Volume: 23 Pages: 106-116
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016006
[Journal Article] Prediction of protein-protein interaction sites using only sequence information and using both sequence and structural information2008
- Author(s)
  M.Kakuta, S.Nakamura, K.Shimizu
- Journal Title
  
  IPSJ Transactions on Bioinformatics 49
  
  Pages: 25-35
- NAID
  110006684907
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Prediction of protein-protein interaction sites using only sequence information and using both sequence and structural information2008
- Author(s)
  M. Kakuta, S. Nakamura, K. Shimizu
- Journal Title
  
  IPSJ Transactions on Bioinformatics(SIG 5(TBIO4)) 49
  
  Pages: 25-35
- Data Source
  KAKENHI-PROJECT-19500251
[Journal Article] Highly accurate method for ligand-binding site prediction in unbound state (apo) protein structures2008
- Author(s)
  Mizuki Morita, Shugo Nakamura, Kentaro Shimizu
- Journal Title
  
  PROTEINS : Structure, Function, and Bioinformatics 73
  
  Pages: 468-479
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016006
[Journal Article] Highly accurate method for ligand-binding site prediction in unbound state (apo) protein structures2008
- Author(s)
  M. Morita, S. Nakamura, K. Shimizu
- Journal Title
  
  PROTEINS 印刷中(掲載確定)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500251
[Journal Article] Highly accurate method for ligand-binding site prediction in unbound state (apo) protein structures.2008
- Author(s)
  M. Morita, S. Nakamura, K. Shimizu
- Journal Title
  
  PROTEINS 83
  
  Pages: 468-479
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500251
[Journal Article] Highly accurate method for ligand-binding site prediction in unbound state (apo) protein structures2008
- Author(s)
  M. Morita, S. Nakamura, K. Shimizu
- Journal Title
  
  PROTEINS 73(2)
  
  Pages: 468-479
- Data Source
  KAKENHI-PROJECT-19500251
[Journal Article] Highly accurate method for ligand-binding site prediction in unbound state (apo) protein structures2008
- Author(s)
  M.Morita, S.Nakamura, K.Shimizu
- Journal Title
  
  PROTEINS: Structure, Function, and Bioinformatics 73, 2
  
  Pages: 468-479
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Mechanism of the difference in the binding affinity of E.coli tRNAGln to glutaminyl-tRNA synthetase caused by non-interface nucleotides in variable loop2007
- Author(s)
  Satoshi Yamazaki, Shugo Nakamura, Tohru Terada, Kentaro Shimizu
- Journal Title
  
  Biophysical Journal 92
  
  Pages: 192-200
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] IgE^b immune complexes activate macrophages through Fc ^γRIV binding2007
- Author(s)
  Masayuki Hirano, Randall S. Davis, W. David Fine, Shugo Nakamura, Kentaro Shimizu, Hirokazu Yagi, Koichi Kato, Robert P. Stephan, Max D. Cooper
- Journal Title
  
  Nature Immunology 8
  
  Pages: 762-771
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Prediction of protein-protein interaction sites using only sequence information and using both sequence and structural information2007
- Author(s)
  M. Kakuta, S. Nakamura, K. Shimizu
- Journal Title
  
  IPSJ Transactions on Bioinformatics 49
  
  Pages: 25-35
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500251
[Journal Article] Insight of the Signal Motif of GPI-(like)-anchored Proteins by Using SVM2006
- Author(s)
  Wei Cao, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
- Journal Title
  
  Proceedings of the 2006 International Conference on Bioinformatics and Computational Biology(BIOCOMP'06)
  
  Pages: 541-546
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Folding free-energy landscape of a 10-residue mini-protein, chignolin2006
- Author(s)
  Daisuke Satoh, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
- Journal Title
  
  FEBS Letters 580
  
  Pages: 3422-3426
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Potential for Assessing Quality of Protein Structure hated on Contact Number Prediction2006
- Author(s)
  Takashi Ishida, Shugo Nakamura, Kentaro Shimizu
- Journal Title
  
  PROTEINS : Structure, Function, and Bioinformatics 64, 4
  
  Pages: 940-947
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Distributed shared arrays : Portable shared-memory programming interface for multiple computer systems2005
- Author(s)
  A.Nomoto, Y.Watanabe, W.Kaneko, T.Terada, S.Nakamura, K.Shimizu
- Journal Title
  
  Proceedings of the 2004 Symposium on Applications & the Internet (印刷中)
- Data Source
  KAKENHI-PROJECT-16570132
[Journal Article] A fast protein-protein docking algorithm using series expansion in terms of spherical basis functions2005
- Author(s)
  Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
- Journal Title
  
  Proceedings of the 16th International Conference on Genome Informatics(GIW2005) 16
  
  Pages: 161-173
- NAID
  130003997422
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Improvement of accuracy of free-energy landscapes of peptids calculated with generalized Born model by using numerical solutions of Poisson's equation2004
- Author(s)
  T.Ishizuka, T.Terada, S.Nakamura, K.Shimizu
- Journal Title
  
  Chemical Physics Letters 393
  
  Pages: 546-551
- Data Source
  KAKENHI-PROJECT-16570132
[Journal Article] Computational Protocol for Screening GPI-anchored Proteins.
- Author(s)
  W. Cao, K. Sumikoshi, T Terada, S. Nakamura, K. Kitamoto K, Shimizu
- Journal Title
  
  Proc. 1st Int'l Conf. Bioinform. Comput. Biol. (BICoB) 2009 (印刷中掲載確定)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500251
[Journal Article] Highly accurate method for ligand-binding site prediction in unbound state(apo) protein structures
- Author(s)
  Mizuki Morita, Shugo Nakamura, Kentaro Shimizu
- Journal Title
  
  PROTEINS : Structure, Function, and Bioinformatics, accepted
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Presentation] Bilab in CASP9～モノマーおよび複合体構造予測～2011
- Author(s)
  中村周吾
- Organizer
  IPAB公開セミナーCASP9特集
- Place of Presentation
  東京工業大学
- Year and Date
  2011-02-24
- Data Source
  KAKENHI-PROJECT-21500289
[Presentation] アミノ酸配列からのタンパク質立体構造予測と4次構造予測2011
- Author(s)
  中村周吾
- Organizer
  日本生化学会大会
- Place of Presentation
  国立京都国際会館
- Year and Date
  2011-09-23
- Data Source
  KAKENHI-PROJECT-21500289
[Presentation] アミノ酸配列からのタンパク質立体構造予測と4次構造予測2011
- Author(s)
  中村周吾
- Organizer
  第84回日本生化学会大会シンポジウム
- Place of Presentation
  国立京都国際会館(招待講演)
- Year and Date
  2011-09-23
- Data Source
  KAKENHI-PROJECT-21500289
[Presentation] Bilab in CASP9-モノマーおよび複合体構造予測-2011
- Author(s)
  中村周吾
- Organizer
  IPAB公開セミナーCASP9特集
- Place of Presentation
  東京工業大学
- Year and Date
  2011-02-24
- Data Source
  KAKENHI-PROJECT-21500289
[Presentation] 蛋白質のホモマー構造予測2011
- Author(s)
  中村周吾
- Organizer
  計算タンパク質科学研究会
- Place of Presentation
  伊良湖
- Year and Date
  2011-08-30
- Data Source
  KAKENHI-PROJECT-21500289
[Presentation] タンパク質-タンパク質ドッキングへの分子内フレキシビリティの導入2010
- Author(s)
  角越和也,中村周吾,清水謙多郎
- Organizer
  日本生物物理学会第48回年会
- Place of Presentation
  東北大学(宮城)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] Carbohydrate-binding proteins : A sequence-based prediction model and the database development2010
- Author(s)
  W.Cao, S.Someya, M.Kakuta, K.Sumikoshi, S.Nakamura, T.Terada, K. K. K.Shimizu
- Organizer
  The 2010 Annual Conference of the Japanese Society for Bioinformatics (JSBi2010)
- Place of Presentation
  九州大学(福岡)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] タンパク質立体構造予測サーバおよびモデル構造の品質評価プラットフォームの開発2010
- Author(s)
  中村周吾
- Organizer
  日本生物物理学会年会
- Place of Presentation
  仙台
- Year and Date
  2010-09-22
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] 蛋白質モデル構造の品質評価について2010
- Author(s)
  中村周吾
- Organizer
  計算タンパク質科学研究会
- Place of Presentation
  城崎大会議館
- Year and Date
  2010-09-04
- Data Source
  KAKENHI-PROJECT-21500289
[Presentation] タンパク質の局所配列構造相関について2009
- Author(s)
  中村周吾
- Organizer
  計算タンパク質科学研究会
- Place of Presentation
  聴泉閣かめや
- Year and Date
  2009-09-03
- Data Source
  KAKENHI-PROJECT-21500289
[Presentation] Development of protein local structure prediction method based on combination of multiple support vector machines2009
- Author(s)
  中村周吾
- Organizer
  生物物理学会年会
- Place of Presentation
  アスティとくしま
- Year and Date
  2009-10-30
- Data Source
  KAKENHI-PROJECT-21500289
[Presentation] 複数のサポートベクタマシンの組み合わせによるタンパク質局所構造予測法の開発2009
- Author(s)
  中村周吾
- Organizer
  日本生物物理学会第47回年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] 複数のサポートベクタマシンの組み合わせによるタンパク質局所構造予測法の開発2009
- Author(s)
  中村周吾
- Organizer
  日本生物物理学会第47回年会
- Place of Presentation
  徳島
- Data Source
  KAKENHI-PROJECT-20016006
[Presentation] BLASTと機械学習を用いたアミノ酸配列からのレクチン様タンパク質の予測2008
- Author(s)
  染谷星志, 角田将典, 森田瑞樹, 角越和也, 中村周吾, 清水謙多郎
- Organizer
  第31回日本分子生物学会年会
- Place of Presentation
  神戸
- Year and Date
  2008-12-12
- Data Source
  KAKENHI-PROJECT-20016006
[Presentation] 精密化プロセスを含めたタンパク質-タンパク質ドッキング手法の開発2008
- Author(s)
  角越和也,寺田透,中村周吾,清水謙多郎
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡国際会議場(福岡)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] タンパク質ペアに対するカーネル関数を用いたタンパク質間相互作用予測2008
- Author(s)
  角田将典,角越和也,中村周吾,清水謙多郎
- Organizer
  第8回日本蛋白質科学会年会
- Place of Presentation
  タワーホール船堀(東京)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] タンパク質のオーダー・ディスオーダーループの配列構造相関の解析2008
- Author(s)
  中村周吾,清水謙多郎
- Organizer
  第8回日本蛋白質科学会年会
- Place of Presentation
  タワーホール船堀(東京)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] ドメイン配列を用いたタンパク質間相互作用予測2008
- Author(s)
  角田将典,角越和也,中村周吾,清水謙多郎
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡国際会議場(福岡)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] タンパク質ループ領域の配列構造相関2008
- Author(s)
  中村周吾
- Organizer
  第8回日本蛋白質科学会
- Place of Presentation
  タワーホール船堀
- Year and Date
  2008-06-10
- Data Source
  KAKENHI-PROJECT-19500251
[Presentation] Sequence-structure correlation analysis for protein loop regions2007
- Author(s)
  Shugo Nakamura, Mizuki Morita, Masanori Kakuta, Kentaro Shimizu
- Organizer
  Forty-Fifth Annual Meeting of the Biophysical Society of Japan, 2P004
- Place of Presentation
  Yokohama
- Year and Date
  2007-12-22
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Presentation] タンパク質ループ領域の配列構造相関の解析2007
- Author(s)
  中村周吾
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2007-12-22
- Data Source
  KAKENHI-PROJECT-19500251
[Presentation] タンパク質ループ領域の配列構造相関の解析2007
- Author(s)
  Shugo Nakamura
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Year and Date
  2007-12-22
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Presentation] Protein tertiary structure prediction based on contact number prediction2006
- Author(s)
  Takashi Ishida, Shugo Nakamura, Kentaro Shimizu
- Organizer
  Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan
- Place of Presentation
  Okinawa
- Year and Date
  2006-11-14
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Presentation] Protein structure refinement by using multicanonical molecular dynamics simulation2005
- Author(s)
  Ryuichiro Ishitani, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
- Organizer
  Forty-Third Annual Meeting of the Biophysical Society of Japan, 1P008
- Place of Presentation
  Sapporo
- Year and Date
  2005-11-23
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191

1. SHIMIZU Kentaro (80178970)

# of Collaborated Projects: 17 results

# of Collaborated Products: 26 results
2. TERADA Tohru (40359641)

# of Collaborated Projects: 6 results

# of Collaborated Products: 5 results
3. 池口満徳 (60261955)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
4. 角越和也 (90431832)

# of Collaborated Projects: 2 results

# of Collaborated Products: 2 results

Nakamura Shugo 中村 周吾

NAKAMURA Shugo 中村 周吾

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Prediction of Complex Structures of Intrinsically Disordered Proteins by Deep Learning Techniques Considering Dynamics InformationPrincipal Investigator

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Comprehensive analysis of the structural information of disorder proteins using computersPrincipal Investigator

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Development of protein function prediction system based on local sequence-structure relationshipsPrincipal Investigator

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Analysis of stability and dynamics of tertiary structure of nucleic acid molecules by using computer simulationPrincipal Investigator

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Nakamura Shugo 中村周吾

NAKAMURA Shugo 中村周吾