• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

TSUKAMOTO Koki  塚本 弘毅

ORCIDConnect your ORCID iD *help
Researcher Number 90399501
Affiliation (based on the past Project Information) *help 2010: 産業技術総合研究所, 生命情報工学研究センター, 特別研究員
2007: Computational Biology Research Center, Research Staff
2007: 産業技術総合研究所, 生命情報工学研究センター, 特別研究員
2006 – 2007: 独立行政法人産業技術総合研究所, 生命情報工学研究センター, 産総研特別研究員
2005: 独立行政法人産業技術総合研究所, 生命情報科学研究センター, 産総研特別研究員
Review Section/Research Field
Except Principal Investigator
Bioinformatics/Life informatics
Keywords
Except Principal Investigator
classification / enzyme reactions / enzyme active sites / protein structures / oxidoreductases / 水素化物イオン移動反応 / フラグメント分子軌道法 / 触媒機構分類 / 電子移動反応 / 分類学 … More / 酵素反応 / 酵素活性部位 / 蛋白質立体構造 / 酸化還元酵素 / バイオインフォマティクス / 高性能計算 / ドッキング / 蛋白質 / コンピュータシミュレーション Less
  • Research Projects

    (2 results)
  • Research Products

    (15 results)
  • Co-Researchers

    (2 People)
  •  An exhaustive all-to-all protein-protein interaction prediction algorithm based on 3-D shape complimentarity and its statistical distribution on protein surface.

    • Principal Investigator
      AKIYAMA Yutaka
    • Project Period (FY)
      2007 – 2010
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Tokyo Institute of Technology
  •  Systematic analyses and development of classification for catalytic mechanisms of oxidoreductase enzymes based on structural information

    • Principal Investigator
      NAGANO Nozomi
    • Project Period (FY)
      2005 – 2007
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      National Institute of Advanced Industrial Science and Technology

All 2008 2007 2006

All Journal Article Presentation

  • [Journal Article] evaluation and prediction system by using the shape complementarity characteristic between proteins2008

    • Author(s)
      Koki Tsukamoto, Tatsuya Yoshikawa, Yuichiro Hourai, Kazuhiko Fukui, Yutaka Akiyama, Development of an affinity
    • Journal Title

      Journal of Bioinformatics and Computational Biology 6(6)

      Pages: 1133-1156

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19300102
  • [Journal Article] Development of an affinity evaluation and prediction system by using the shape complementarity characteristic between proteins2008

    • Author(s)
      Koki Tsukamoto, Tatsuya Yoshikawa, Yuichiro Hourai, Kazuhiko Fukui, Yutaka Akiyama
    • Journal Title

      Journal of Bioinformatics and Computational Biology 6(6)

      Pages: 1133-1156

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19300102
  • [Journal Article] Development of an affinity evaluation and prediction system by using the shape complementarity characteristic between proteins2008

    • Author(s)
      Koki Tsukamoto, Tatsuya Yoshikawa, Yuichiro Hourai, Kazuhiko Fukui, Yutaka Akiyama
    • Journal Title

      Journal of Bioinformatics and Computational Biology 6 (6)

      Pages: 1133-1156

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19300102
  • [Journal Article] Evaluation for interaction energy between glutamine and glutamine and various chemical compounds for developing the virtual screening system using quantum chemical calculations and molecular dynamics simulations.2007

    • Author(s)
      K. Tsukamoto, H. Shimizu, T. Ishida, Y. Akiyama, N. Nukina
    • Journal Title

      WSEAS Transactions on Computers 6(4)

      Pages: 636-641

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-17300097
  • [Journal Article] Evaluation for interaction energy between glutamine and glutamine and various chemical compounds for developing the virtual screening system using quantum chemical calculations and molecular dynamics simulations.2007

    • Author(s)
      K.Tsukamoto, H.Shimizu, T.Ishida, Y.Akiyama, N.Nukina
    • Journal Title

      WSEAS Transactions on Computers 6

      Pages: 636-641

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17300097
  • [Journal Article] Evaluation for interaction energy between glutamine and glutamine and various chemical compounds for developing the virtual screening system using quantum chemical calculations and molecular dynamics simulations.2007

    • Author(s)
      K.Tsukamoto, H.Shimizu, T.Ishida, Y.Akiyama, N.Nukina
    • Journal Title

      WSEAS Transactions on Computers 6(4)

      Pages: 636-641

    • Data Source
      KAKENHI-PROJECT-17300097
  • [Journal Article] Automated Docking of NADH to the Active Site of Nitric Oxide Reductase from Fusarium Oxysporum and Semi-empirical Calculations of the Electron Transfer Mechanism and the Hydrogen-bonding Network.2006

    • Author(s)
      K. Tsukamoto, Y. Akiyama
    • Journal Title

      WSEAS Transactions on Computers 5(8)

      Pages: 1701-1706

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-17300097
  • [Journal Article] Aggrigation mechanism of polyglutamine diseases revealed using quantum chemical calculations, fragment molecular orbital calculations, molecular dynamics simulations, and binding free energy calculations2006

    • Author(s)
      K.Tsukamoto, H.Shimizu, T.Ishida, Y.Akiyama, N.Nukina
    • Journal Title

      Journal of Molecular Structure:THEOCHEM 778

      Pages: 85-95

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17300097
  • [Journal Article] Automated Docking of NADH to the Active Site of Nitric Oxide Reductase from Fusarium Oxysporum and Semi-empirical Calculations of the Electron Transfer Mechanism and the Hydrogen-bonding Network2006

    • Author(s)
      K.Tsukamoto, Y.Akiyama
    • Journal Title

      WSEAS Transactions on Computers 5(8)

      Pages: 1701-1706

    • Data Source
      KAKENHI-PROJECT-17300097
  • [Journal Article] Aggrigation mechanism of polyglutamine diseases revealed using quantum chemical calculations, fragment molecular orbital calculations, molecular dynamics simulations, and binding free energy calculations.2006

    • Author(s)
      K. Tsukamoto, H. Shimizu, T. Ishida, Y. Akiyama, N. Nukina
    • Journal Title

      Journal of Molecular Structure : THEOCHEM 778

      Pages: 85-95

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-17300097
  • [Journal Article] Automated Docking of NADH to the Active Site of Nitric Oxide Reductase from Fusarium Oxysporum and Semi-empirical Calculations of the Electron Transfer Mechanism and the Hydrogen-bonding Network2006

    • Author(s)
      K.Tsukamoto, Y.Akiyama
    • Journal Title

      WSEAS Transactions on Computers 5

      Pages: 1701-1706

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17300097
  • [Journal Article] Aggrigation mechanism of polyglutamine diseases revealed using quantum chemical calculations, fragment molecular orbital calculations, molecular dynamics simulations, and binding free energy calculations2006

    • Author(s)
      K.Tsukamoto, H.Shimizu, T.Ishida, Y.Akiyama, N.Nukina
    • Journal Title

      Journal of Molecular Structure : THEOCHEM 778

      Pages: 85-95

    • Data Source
      KAKENHI-PROJECT-17300097
  • [Presentation] Aggregation mechanism of polyglutamine diseases revealed using quantum chemical calculations, fragment molecular orbital calculations, molecular dynamics simulations, and binding free energy calculations2007

    • Author(s)
      Koki Tsukamoto, Hideaki Shimizu, Takashi Ishida, Yutaka Akiyama, Nobuyuki Nukina
    • Organizer
      The 2007 Annual Conference of Japanese Society for Bioinformatics (JSBi2007)
    • Place of Presentation
      東京・お台場
    • Year and Date
      2007-12-18
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-17300097
  • [Presentation] Aggregation mechanism of polyglutamine diseases revealed using quantum chemical calculations, fragment molecular orbital calculations, molecular dynamics simulations,and binding free energy calculations2007

    • Author(s)
      Koki Tsukamoto, Hideaki Shimizu, Takashi Ishida,Yutaka Akiyama, Nobuyuki Nukina
    • Organizer
      The 2007 Annual Conference of Japanse Society for Bioinformatics(JSBi2007)
    • Place of Presentation
      Tokyo
    • Year and Date
      2007-12-18
    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-17300097
  • [Presentation] Aggiregation mechanism of polyglutamine diseases revealed using quantumchemical calculations,fragment molecular orbital calculations,molecular dvnamics simulations,and bindinff free energy calculations2007

    • Author(s)
      Koki Tsukamoto, Hideaki Shimizu, Takashi Ishida, Yutaka Akiyama, Nobuyuki Nukina
    • Organizer
      The 2007 Annual Conference of Japanese Society forBioinformatics (JSBi2007)
    • Place of Presentation
      東京・お台場
    • Year and Date
      2007-12-18
    • Data Source
      KAKENHI-PROJECT-17300097
  • 1.  AKIYAMA Yutaka (30243091)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 3 results
  • 2.  NAGANO Nozomi (70357648)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results

URL: 

Are you sure that you want to link your ORCID iD to your KAKEN Researcher profile?
* This action can be performed only by the researcher himself/herself who is listed on the KAKEN Researcher’s page. Are you sure that this KAKEN Researcher’s page is your page?

この研究者とORCID iDの連携を行いますか?
※ この処理は、研究者本人だけが実行できます。

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi