YING Bei-Wen インベイウェン

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Ying Bei-Wen インベイウェン

YING Beiwen インベイウェン

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Researcher Number	90422401
Other IDs	https://orcid.org/0000-0003-2517-5686
Affiliation (Current)	2024: 筑波大学, 生命環境系, 准教授
Affiliation (based on the past Project Information) *help	2019 – 2022: 筑波大学, 生命環境系, 准教授 2013 – 2016: 筑波大学, 生命環境系, 准教授 2013: 筑波大学, 生命環境科学研究科(系), 准教授 2012: 大阪大学, 情報科学研究科, 特任准教授 2011: 大阪大学, 大学院・情報科学研究科, 特任准教授 2011: 大阪大学, 大学院・情報科学研究科, 特任准教授(常勤) 2010: 大阪大学, 大学院・情報科学研究科, 助教
Review Section/Research Field	Principal Investigator Medium-sized Section 62:Applied informatics and related fields / Basic Section 43060:System genome science-related / 宇宙生命学 / Complex systems / Biological Sciences / Evolutionary biology Except Principal Investigator Genome biology
Keywords	Principal Investigator 増殖速度 / 遺伝子発現 / 大腸菌 / 細胞増殖 / 実験進化 / 細胞間相互作用 / ビッグデータ / 培地 / 機械学習 / 細胞培養 … More / 周期性 / ゲノム縮小 / 飢餓 / 翻訳 / 栄養枯渇 / 適応 / 増殖 / ゲノム / 人工回路 / 細胞分化 / 確率性 / ゆらぎ / 微生物 / 遺伝子 / 発現制御 / 進化 / 分化 / 発生 … More Except Principal Investigator プロテイオム / 分子進化 / トランスクリプトーム / 高温適応 / ゲノム進化 Less

細胞培養のデータ駆動型最適化の基盤技術の開発Principal Investigator
- Principal Investigator
  
  インベイウェン
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 62:Applied informatics and related fields
- Research Institution
  University of Tsukuba
Mechanisms of the correlation between genome reduction and growth ratePrincipal Investigator
- Principal Investigator
  
  Ying Bei-Wen
- Project Period (FY)
  2019 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  University of Tsukuba
人工的遺伝子回路の発現レベルの予測モデルの構築Principal Investigator
- Principal Investigator
  
  インベイウェン
- Project Period (FY)
  2014 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  University of Tsukuba
E. coli cells growing under starvationPrincipal Investigator
- Principal Investigator
  
  YING BEIWEN
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  宇宙生命学
- Research Institution
  University of Tsukuba
細胞増殖に伴う集団秩序の維持Principal Investigator
- Principal Investigator
  
  インベイウェン
- Project Period (FY)
  2013 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  University of Tsukuba
Study on genomic evolution of thermal adaptive Escherichia coli.
- Principal Investigator
  
  YOMO Tetsuya
- Project Period (FY)
  2011 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Genome biology
- Research Institution
  Osaka University
Construction of cell differentiation model by bacterial cellsPrincipal Investigator
- Principal Investigator
  
  YING Beiwen
- Project Period (FY)
  2010 – 2011
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Evolutionary biology
- Research Institution
  Osaka University

[Book] Synthetic Biology2013
- Author(s)
  Bei-Wen Ying, Yuya Akeno, Tetsuya Yomo.
- Publisher
  Humana Press
- Data Source
  KAKENHI-PROJECT-23241061
[Book] Built-in synthetic gene circuits in Escherichia coli-methodology and applications. Advances in Applied Biotechnology I(ed. M Petre)2012
- Author(s)
  BW Ying & T Yomo
- Publisher
  InTech, Rijeka
- Data Source
  KAKENHI-PROJECT-22657059
[Book] Advances in Applied Biotechnology2012
- Author(s)
  Bei-Wen Ying, Tetsuya Yomo.
- Publisher
  INTECH d.o.o.Rijeka
- Data Source
  KAKENHI-PROJECT-23241061
[Book] Advances in Applied Biotechnology I(分担)2012
- Author(s)
  Ying, et al
- Total Pages
  276
- Publisher
  InTech, Rijeka
- Data Source
  KAKENHI-PROJECT-22657059
[Book] Method in Molecular Biology (Synthetic Biology)(分担)2012
- Author(s)
  Ying, et al
- Publisher
  Springer(未定)
- Data Source
  KAKENHI-PROJECT-22657059
[Book] Construction of synthetic gene circuits in the Escherichia coli genome. Methods in Molecular Biology(eds. K Polizzi & C Kontoravdi)
- Author(s)
  BW Ying, Y Akeno & T Yomo(in press)
- Publisher
  Springer
- Data Source
  KAKENHI-PROJECT-22657059
[Journal Article] Machine learning-assisted discovery of growth decision elements by relating bacterial population dynamics to environmental diversity.2023
- Author(s)
  H Aida, K Uchida, M Nagai, T Hashizume, S Masuo, N Takaya, BW Ying
- Journal Title
  
  bioRxiv
  
  Volume: -
- DOI
  10.1101/2022.12.24.521878
- Open Access
- Data Source
  KAKENHI-PROJECT-21K19815
[Journal Article] Machine learning-assisted discovery of growth decision elements by relating bacterial population dynamics to environmental diversity.2022
- Author(s)
  H Aida, T Hashizume, K Ashino, BW Ying
- Journal Title
  
  eLife
  
  Volume: 11
- DOI
  10.7554/elife.76846
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K19815
[Journal Article] Machine learning-assisted discovery of growth decision elements by relating bacterial population dynamics to environmental diversity.2022
- Author(s)
  AIDA honoka; HASHIZUME Takamasa; ASHINO Kazuha; YING BEIWEN
- Journal Title
  
  bioRxiv
  
  Volume: -
- DOI
  10.1101/2022.02.10.479953
- Open Access
- Data Source
  KAKENHI-PROJECT-21K19815
[Journal Article] Experimental evolution expands the breadth of adaptation to an environmental gradient correlated with genome reduction.2022
- Author(s)
  M Kurokawa, I Nishimura, BW Ying
- Journal Title
  
  Front Microbial
  
  Volume: 13
- DOI
  10.3389/fmicb.2022.826894
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K19815, KAKENHI-PROJECT-19H03215
[Journal Article] Contribution of the genomic and nutritional differentiation to the spatial distribution of bacterial colonies.2022
- Author(s)
  K Hitomi, J Weng, BW Ying
- Journal Title
  
  Front Microbial
  
  Volume: 13
- DOI
  10.3389/fmicb.2022.948657
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K19815
[Journal Article] Primordial mimicry induces morphological change in Escherichia coli2022
- Author(s)
  H Lu, H Aida, M Kurokawa, F Chen, Y Xia, J Xu, K Li, BW Ying, T Yomo
- Journal Title
  
  Comm Biol
  
  Volume: 5 Issue: 1
- DOI
  10.1038/s42003-021-02954-w
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H03215
[Journal Article] Correlation between the spatial distribution and colony size was common for monogenetic bacteria in laboratory conditions.2021
- Author(s)
  H XUE, M Kurokawa, BW Ying
- Journal Title
  
  BMC Microbial
  
  Volume: 21 Issue: 1
- DOI
  10.1186/s12866-021-02180-8
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H03215
[Journal Article] The highly conserved chromosomal periodicity of transcriptomes and the correlation of its amplitude with the growth rate in Escherichia coli2020
- Author(s)
  NAGAI Motoki; KUROKAWA Masaomi; YING Bei-Wen
- Journal Title
  
  DNA Research
  
  Volume: 27(3) Issue: 3
- DOI
  10.1093/dnares/dsaa018
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H03215
[Journal Article] Correlated chromosomal periodicities according to the growth rate and gene expression2020
- Author(s)
  LIU Liu; KUROKAWA Masaomi; NAGAI Motoki; SENO Shigeto; YING Bei-Wen
- Journal Title
  
  Scientific Report
  
  Volume: 10(1) Issue: 1
- DOI
  10.1038/s41598-020-72389-6
- NAID
  120007163339
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H03215
[Journal Article] The common chromosomal periodicity of transcriptomes is correlated with the bacterial growth rate2020
- Author(s)
  NAGAI Motoki; KUROKAWA Masaomi; YING Bei-Wen
- Journal Title
  
  bioRxiv
  
  Volume: -
- DOI
  10.1101/2020.05.24.113886
- Data Source
  KAKENHI-PROJECT-19H03215
[Journal Article] Clustering of Bacterial Growth Dynamics in Response to Growth Media by Dynamic Time Warping2020
- Author(s)
  CAO Yang-Yang; YOMO Tetsuya; YING Bei-Wen
- Journal Title
  
  Microorganisms
  
  Volume: 8 (3) Issue: 3 Pages: 331-331
- DOI
  10.3390/microorganisms8030331
- NAID
  120007132872
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H03215
[Journal Article] Experimental Challenges for Reduced Genomes: The Cell Model Escherichia coli2019
- Author(s)
  KUROKAWA Masaomi; YING Bei-Wen
- Journal Title
  
  Microoganisms
  
  Volume: 8 (1) Issue: 1 Pages: 3-3
- DOI
  10.3390/microorganisms8010003
- NAID
  120007132873
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H03215
[Journal Article] Predicting the decision making chemicals used for bacterial growth2019
- Author(s)
  ASHINO Kazuha; SUGANO Kenta; AMAGASA Toshiyuki; YING Bei-Wen
- Journal Title
  
  Scientific Reports
  
  Volume: 9 Issue: 1
- DOI
  10.1038/s41598-019-43587-8
- NAID
  120007133472
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H03215
[Journal Article] Precise analysis of bacterial growth in a high-throughput manner2017
- Author(s)
  M Kurokawa, BW Ying
- Journal Title
  
  JoVE
  
  Volume: in press
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26506003
[Journal Article] The Escherichia coli transcriptome linked to growth fitness2016
- Author(s)
  BW Ying, K Yama, K Kitahara, T Yomo
- Journal Title
  
  Genomics Data
  
  Volume: 7 Pages: 1-3
- DOI
  10.1016/j.gdata.2015.11.011
- NAID
  120007135353
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26506003, KAKENHI-PUBLICLY-26119702
[Journal Article] Correlation between genome reduction and bacterial growth.2016
- Author(s)
  M Kurokawa, S Seno, H Matsuda, BW Ying
- Journal Title
  
  DNA Res
  
  Volume: 23 Issue: 6 Pages: 517-525
- DOI
  10.1093/dnares/dsw035
- NAID
  120007135048
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26506003
[Journal Article] Global coordination in adaptation to gene rewiring.2015
- Author(s)
  Y Murakami, Y Matsumoto, S Tsuru, BW Ying & T Yomo
- Journal Title
  
  Nucleic Acids Res
  
  Volume: 43 Issue: 2 Pages: 1304-1316
- DOI
  10.1093/nar/gku1366
- NAID
  120007130352
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PUBLICLY-25111715, KAKENHI-PUBLICLY-26119702, KAKENHI-PROJECT-26506003
[Journal Article] Nutrient-dependent growth defects and mutability of mutators in Escherichia coli.2015
- Author(s)
  Y Ishizawa, BW Ying, S Tsuru & T Yomo
- Journal Title
  
  Genes Cells
  
  Volume: 20 Issue: 1 Pages: 68-76
- DOI
  10.1111/gtc.12199
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-25111715, KAKENHI-PUBLICLY-26119702, KAKENHI-PROJECT-26506003
[Journal Article] Functional specialization in regulation and quality control in thermal adaptive evolution2015
- Author(s)
  K Yama, Y Matsumoto, Y Murakami, S Seno, H Matsuda, K Gotoh, D Motooka, S Nakamura, BW Ying, T Yomo
- Journal Title
  
  Genes Cells
  
  Volume: 20 Issue: 11 Pages: 943-955
- DOI
  10.1111/gtc.12298
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26506003, KAKENHI-PUBLICLY-26119702
[Journal Article] Evolutionary Consequence of a Trade-Off between Growth and Maintenance along with Ribosomal Damages2015
- Author(s)
  Ying BW, Honda T, Tsuru S, Seno S, Matsuda H, Kazuta Y, Yomo T
- Journal Title
  
  PLOS ONE
  
  Volume: 10(8) Issue: 8 Pages: e0135639-e0135639
- DOI
  10.1371/journal.pone.0135639
- NAID
  120007136183
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15KT0078, KAKENHI-PROJECT-26506003, KAKENHI-PUBLICLY-26119702
[Journal Article] Bacterial transcriptome reorganization in thermal adaptive evolution2015
- Author(s)
  B-W. Ying, Y. Matsumoto, K. Kitahara, S. Suzuki, N. Ono, C. Furusawa, T. Kishimoto, T. Yomo
- Journal Title
  
  BMC Genomics
  
  Volume: 16 Issue: 1 Pages: 1-11
- DOI
  10.1186/s12864-015-1999-x
- NAID
  120007136181
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26440200, KAKENHI-PROJECT-26506003, KAKENHI-PUBLICLY-26119702, KAKENHI-PROJECT-15H05746, KAKENHI-PROJECT-26290071
[Journal Article] Molecular Clock of Neutral Mutations in a Fitness-Increasing Evolutionary Process2015
- Author(s)
  Kishimoto T, Ying BW, Tsuru S, Iijima L, Suzuki S, Hashimoto T, Oyake A, Kobayashi H, Someya Y, Narisawa D, Yomo T
- Journal Title
  
  PLOS Genetics
  
  Volume: 11(7) Issue: 7 Pages: 1-18
- DOI
  10.1371/journal.pgen.1005392
- NAID
  120007136182
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15KT0078, KAKENHI-PROJECT-26440200, KAKENHI-PROJECT-26506003, KAKENHI-PUBLICLY-26119702
[Journal Article] Directed evolution of cell size in Escherichia coli.2014
- Author(s)
  Yoshida M, Tsuru S, Hirata N, Seno S, Matsuda H, Ying BW, Yomo T.
- Journal Title
  
  BMC Evol Biol
  
  Volume: 14
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26506003
[Journal Article] Gene expression scaled by distance to the genome replication site.2014
- Author(s)
  Bei-Wen Ying, Saburo Tsuru, Shigeto Seno, Hideo Matsudab, Tetsuya Yomo.
- Journal Title
  
  Mol. BioSyst., 2014
  
  Volume: 10 Issue: 3 Pages: 375-379
- DOI
  10.1039/c3mb70254e
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23241061, KAKENHI-PROJECT-23570277, KAKENHI-PROJECT-24710228, KAKENHI-PUBLICLY-25111715
[Journal Article] Directed evolution of cell size in Escherichia coli.2014
- Author(s)
  M Yoshida, S Tsuru, N Hirata, S Seno, H Matsuda, BW Ying & T Yomo
- Journal Title
  
  BMC Evol Biol
  
  Volume: 14
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-26119702
[Journal Article] Mutation accumulation in bacteria exposed to UV radiation.2014
- Author(s)
  A Shibai, S Tsuru, BW Ying, D Motooka, K Gotoh, S Nakamura & T Yomo
- Journal Title
  
  Artificial Life
  
  Volume: 14
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-25111715
[Journal Article] Directed evolution of cell size in Escherichia coli.2014
- Author(s)
  M Yoshida, S Tsuru, N Hirata, S Seno, H Matsuda, BW Ying & T Yomo
- Journal Title
  
  BMC Evol Biol
  
  Volume: 14
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-25111715
[Journal Article] A reduced genome decreases the host carrying capacity for foreign DNA.2014
- Author(s)
  Y Akeno, BW Ying, S Tsuru & T Yomo
- Journal Title
  
  Microbiol Cell Factories
  
  Volume: 13 Issue: 1
- DOI
  10.1186/1475-2859-13-49
- NAID
  120007136730
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PUBLICLY-25111715, KAKENHI-PUBLICLY-26119702, KAKENHI-PROJECT-26506003
[Journal Article] Mutation accumulation in bacteria exposed to UV radiation.2014
- Author(s)
  A Shibai, S Tsuru, BW Ying, D Motooka, K Gotoh, S Nakamura & T Yomo
- Journal Title
  
  Artificial Life
  
  Volume: 14 Pages: 757-758
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-26119702
[Journal Article] Growth rate-coordinated transcriptome reorganization in bacteria2013
- Author(s)
  Matsumoto, Y., Murakami, Y., Tsuru, S., Ying, B., Yomo, T
- Journal Title
  
  BMC Genomics 2013
  
  Volume: 14 Issue: 1 Pages: 1-10
- DOI
  10.1186/1471-2164-14-808
- NAID
  120007130585
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23241061, KAKENHI-PROJECT-23570277, KAKENHI-PROJECT-24710228, KAKENHI-PUBLICLY-25111715
[Journal Article] Multilevel comparative analysis of the contributions of genome reduction and heat shock to the Escherichia coli transcriptome2013
- Author(s)
  Ying, B., Seno, S., Kaneko, F., Matsuda, H., Yomo, T
- Journal Title
  
  BMC Genomics 2013
  
  Volume: 14 Issue: 1 Pages: 1-13
- DOI
  10.1186/1471-2164-14-25
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23241061, KAKENHI-PROJECT-23570277
[Journal Article] Construction of synthetic gene circuits in the Escherichia coli.2013
- Author(s)
  BW Ying, Y Akeno, T Yomo
- Journal Title
  
  Methods Mol Biol
  
  Volume: 1073 Pages: 157-168
- DOI
  10.1007/978-1-62703-625-2_13
- ISBN
  9781627036245, 9781627036252
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-25111715
[Journal Article] Bacterial cells carrying synthetic dual-function operon survived starvation2011
- Author(s)
  Y Matsumoto, Y Ito, S Tsuru, BW Ying & T Yomo
- Journal Title
  
  J Biomed Biotechnol
- Data Source
  KAKENHI-PROJECT-22657059
[Journal Article] Bacterial cells carrying synthetic dual-function operon survived starvation2011
- Author(s)
  Matsumoto, et al
- Journal Title
  
  J Biomed Biotechnol
  
  Volume: Vol.2011 e489265 Issue: 1 Pages: 1-10
- DOI
  10.1155/2011/489265
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22657059, KAKENHI-PROJECT-23241061
[Journal Article] Refined method for the genomic integration of complex synthetic circuits.2010
- Author(s)
  B.W.Ying, et al
- Journal Title
  
  Journal of Bioscience and Bioengineering
  
  Volume: 110(5) Pages: 529-536
- NAID
  110007988801
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22657059
[Journal Article] Refined method for the genomic integration of complex synthetic circuits
- Author(s)
  BW Ying, Y Ito, Y Shimizu & T Yomo
- Journal Title
  
  J Biosci Bioeng
  
  Volume: 110 Pages: 529-536
- NAID
  110007988801
- Data Source
  KAKENHI-PROJECT-22657059
[Journal Article] Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli
- Author(s)
  S Tsuru, N Yasuda, Y Murakami, J Ushioda, A Kashiwagi, S Suzuki, K Mori, BW Ying & T Yomo
- Journal Title
  
  Mol Syst Biol
  
  Volume: 7
- Data Source
  KAKENHI-PROJECT-22657059
[Journal Article] Stochastic switching induced adaptation in a starved Escherichia coli population
- Author(s)
  Y Shimizu, S Tsuru, Y Ito, BW Ying & T Yomo
- Journal Title
  
  PLoS ONE
  
  Volume: 6
- Data Source
  KAKENHI-PROJECT-22657059
[Patent] 培養環境判定システム、培養装置、要求取得装置及びプログラム2022
- Inventor(s)
  イン　ベイウェン、會田　穂乃香、橋詰　崇雅
- Industrial Property Rights Holder
  イン　ベイウェン、會田　穂乃香、橋詰　崇雅
- Industrial Property Rights Type
  特許
- Filing Date
  2022
- Data Source
  KAKENHI-PROJECT-21K19815
[Patent] 培養環境判定装置、培養システム、培養環境判定方法、培養方法、及びプログラム2022
- Inventor(s)
  イン　ベイウェン、天笠　俊之
- Industrial Property Rights Holder
  イン　ベイウェン、天笠　俊之
- Industrial Property Rights Type
  特許
- Filing Date
  2022
- Data Source
  KAKENHI-PROJECT-21K19815
[Patent] 微生物培養用合成培地及び微生物の培養方法2021
- Inventor(s)
  イン　ベイウェン、會田　穂乃香
- Industrial Property Rights Holder
  イン　ベイウェン、會田　穂乃香
- Industrial Property Rights Type
  特許
- Filing Date
  2021
- Data Source
  KAKENHI-PROJECT-21K19815
[Presentation] 遺伝情報と化学環境が大腸菌増殖に与える影響の横断的探索2023
- Author(s)
  會田穂乃香、イン　ベイウェン
- Organizer
  日本ゲノム微生物学会第17回大会
- Data Source
  KAKENHI-PROJECT-21K19815
[Presentation] 細菌の増殖動態を決定する環境因子の機械学習支援型探索2023
- Author(s)
  會田穂乃香、イン　ベイウェン
- Organizer
  日本農芸化学会2023年度広島大会
- Data Source
  KAKENHI-PROJECT-21K19815
[Presentation] 機械学習による微生物選択培地の最適化2023
- Author(s)
  張抒楊、會田穂乃香、イン　ベイウェン
- Organizer
  日本農芸化学会2023年度広島大会
- Data Source
  KAKENHI-PROJECT-21K19815
[Presentation] バイオマス生産最適化に向けたデータ駆動型システム微生物2022
- Author(s)
  イン　ベイウェン
- Organizer
  MiCSワークショップ
- Invited
- Data Source
  KAKENHI-PROJECT-21K19815
[Presentation] 大腸菌増殖を決定する環境因子の網羅的探索2022
- Author(s)
  會田　穂乃香、橋詰　崇雅、イン　ベイウェン
- Organizer
  日本ゲノム微生物学会第16回大会
- Data Source
  KAKENHI-PROJECT-21K19815
[Presentation] バイオマス生産最適化に向けたデータ駆動型システム微生物2022
- Author(s)
  イン　ベイウェン
- Organizer
  MiCSワークショップ
- Invited
- Data Source
  KAKENHI-PROJECT-19H03215
[Presentation] 大腸菌増殖を決定する環境因子の網羅的探索2022
- Author(s)
  會田　穂乃香; 橋詰　崇雅; イン　ベイウェン
- Organizer
  日本ゲノム微生物学会第16回大会
- Data Source
  KAKENHI-PROJECT-19H03215
[Presentation] 機械学習による細胞増殖の予測とその制御2022
- Author(s)
  イン　ベイウェン
- Organizer
  技術情報協会公開セミナー
- Invited
- Data Source
  KAKENHI-PROJECT-21K19815
[Presentation] 機械学習による微生物増殖の予測2022
- Author(s)
  橋詰　崇雅、會田　穂乃香、イン　ベイウェン
- Organizer
  日本ゲノム微生物学会第16回大会
- Data Source
  KAKENHI-PROJECT-21K19815
[Presentation] 機械学習による微生物増殖の予測2022
- Author(s)
  橋詰　崇雅; 會田　穂乃香; イン　ベイウェン
- Organizer
  日本ゲノム微生物学会第16回大会
- Data Source
  KAKENHI-PROJECT-19H03215
[Presentation] 大腸菌コロニー形成の空間分布の法則2022
- Author(s)
  人見　健矢; イン　ベイウェン
- Organizer
  日本ゲノム微生物学会第16回大会
- Data Source
  KAKENHI-PROJECT-19H03215
[Presentation] 細胞培養のデータ駆動式培地開発2022
- Author(s)
  橋詰崇雅、イン　ベイウェン
- Organizer
  日本動物細胞工学会JAACT2022
- Data Source
  KAKENHI-PROJECT-21K19815
[Presentation] 微生物集団増殖に優位的に影響する環境因子の探索2021
- Author(s)
  會田　穂乃香; 橋詰　崇雅; イン　ベイウェン
- Organizer
  日本微生物生態学会第34回大会
- Data Source
  KAKENHI-PROJECT-19H03215
[Presentation] 大腸菌遺伝子発現のゲノム周期性と増殖速度の相関2021
- Author(s)
  永井　元基; 黒川　真臣; イン　ベイウェン
- Organizer
  日本ゲノム微生物学会第15回大会
- Data Source
  KAKENHI-PROJECT-19H03215
[Presentation] 微生物集団増殖に優位的に影響する環境因子の探索2021
- Author(s)
  會田　穂乃香、橋詰　崇雅、イン　ベイウェン
- Organizer
  日本微生物生態学会第34回大会
- Data Source
  KAKENHI-PROJECT-21K19815
[Presentation] 大腸菌遺伝子発現のゲノム周期性と増殖速度の相関2021
- Author(s)
  永井元基、黒川真臣、インベイウェン
- Organizer
  日本ゲノム微生物学会第15回大会
- Data Source
  KAKENHI-PROJECT-19H03215
[Presentation] 大腸菌ゲノム縮小に伴う変異率と増殖速度の協調的変化2021
- Author(s)
  黒川　真臣; 西村　一成; イン　ベイウェン
- Organizer
  日本ゲノム微生物学会第15回大会
- Data Source
  KAKENHI-PROJECT-19H03215
[Presentation] 大腸菌コロニー形成の空間分布の解析2021
- Author(s)
  人見　健矢; イン　ベイウェン
- Organizer
  日本微生物生態学会第34回大会
- Data Source
  KAKENHI-PROJECT-19H03215
[Presentation] 遺伝子発現のゲノム周期性に関する検証2020
- Author(s)
  永井元基、黒川真臣、インベイウェン
- Organizer
  日本ゲノム微生物学会
- Data Source
  KAKENHI-PROJECT-19H03215
[Presentation] 微生物培養のデータ駆動型最適化2020
- Author(s)
  インベイウェン、會田穂乃香、内田圭祐、芦野一葉、天笠俊之
- Organizer
  日本ゲノム微生物学会
- Data Source
  KAKENHI-PROJECT-19H03215
[Presentation] 大腸菌ゲノム縮小株ライブラリーの網羅的実験進化2020
- Author(s)
  黒川真臣、永井元基、瀬尾茂人、小椋義俊、林哲也、インベイウェン
- Organizer
  日本ゲノム微生物学会
- Data Source
  KAKENHI-PROJECT-19H03215
[Presentation] 大腸菌コロニー形成パターンの解析2019
- Author(s)
  XUE Heng, YING Bei-Wen
- Organizer
  日本微生物生態学会
- Data Source
  KAKENHI-PROJECT-19H03215
[Presentation] 大腸菌広域欠失株の増殖に対する数理的評価2016
- Author(s)
  黒川真臣、瀬尾茂人、松田秀雄、イン　ベイウェン
- Organizer
  日本ゲノム微生物学会第10回大会
- Place of Presentation
  東京工業大学（東京都目黒区）
- Year and Date
  2016-03-04
- Data Source
  KAKENHI-PROJECT-26506003
[Presentation] 大腸菌広域欠失株の増殖に対する数理的評価2016
- Author(s)
  黒川真臣、瀬尾茂人、松田秀雄、イン　ベイウェン
- Organizer
  日本ゲノム微生物学会第10回大会
- Place of Presentation
  東京工業大学（東京都目黒区）
- Year and Date
  2016-03-04
- Data Source
  KAKENHI-PUBLICLY-26119702
[Presentation] Connecting bacterial growth with genome and transcriptome2016
- Author(s)
  BW Ying
- Organizer
  International Workshop on Synthetic Biology and Systems Biology of Microbes
- Place of Presentation
  奈良先端技術大学院大学（奈良県生駒市）
- Year and Date
  2016-03-17
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26506003
[Presentation] An evolutionary trade-off between growth and sustainability accompaniedby ribosomal damages2016
- Author(s)
  Ying BW, Honda T, Tsuru S, Seno S, Matsuda H, Kazuta Y, Yomo T
- Organizer
  日本ゲノム微生物学会第10回大会
- Place of Presentation
  東京工業大学（東京都目黒区）
- Year and Date
  2016-03-04
- Data Source
  KAKENHI-PUBLICLY-26119702
[Presentation] Connecting bacterial growth with genome and transcriptome2016
- Author(s)
  BW Ying
- Organizer
  International workshop on Synthetic Biology and Systems Biology of Microbes"
- Place of Presentation
  奈良先端技術大学院大学（奈良県生駒市）
- Year and Date
  2016-03-17
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-26119702
[Presentation] An evolutionary trade-off between growth and sustainability accompanied by ribosomal damages2016
- Author(s)
  BW Ying, T Honda, S Tsuru, S Seno, H Matsuda, Y Kazuta, T Yomo
- Organizer
  日本ゲノム微生物学会第10回大会
- Place of Presentation
  東京工業大学（東京都目黒区）
- Year and Date
  2016-03-04
- Data Source
  KAKENHI-PROJECT-26506003
[Presentation] Survival strategies learned from bacterial cells in laboratory2015
- Author(s)
  BW Ying
- Organizer
  2015 JSBi SIG Bio-Systems Theory Workshop
- Place of Presentation
  東京医科歯科大学（東京都文京区）
- Year and Date
  2015-11-27
- Invited
- Data Source
  KAKENHI-PROJECT-26506003
[Presentation] 実験進化による極少栄養下で生きる大腸菌の創出2015
- Author(s)
  イン　ベイウェン、本田朋也、四方哲也
- Organizer
  日本宇宙生物科学会第29回大会
- Place of Presentation
  帝京大学（東京都板橋区）
- Year and Date
  2015-09-26
- Data Source
  KAKENHI-PROJECT-26506003
[Presentation] Survival strategies learned from bacterial cells in laboratory2015
- Author(s)
  BW Ying
- Organizer
  2015 JSBi SIG Bio-Systems Theory Workshop
- Place of Presentation
  東京医科歯科大学（東京都文京区）
- Year and Date
  2015-11-27
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-26119702
[Presentation] 実験進化による極少栄養下で生きる大腸菌の創出2015
- Author(s)
  イン　ベイウェン、本田朋也、四方哲也
- Organizer
  日本宇宙生物科学会第29回大会
- Place of Presentation
  帝京大学（東京都板橋区）
- Year and Date
  2015-09-26
- Data Source
  KAKENHI-PUBLICLY-26119702
[Presentation] 高温適応進化におけるgroL 変異の機能解析1～高温適応初期におけるgroL 変異の機能解析～2013
- Author(s)
  松浦梨恵, 鶴切真友美, 花神彩香, インベイウェン, 岸本利彦, 四方哲也
- Organizer
  第36回日本分子生物学会年会
- Place of Presentation
  神戸ポートアイランド
- Year and Date
  2013-12-05
- Data Source
  KAKENHI-PROJECT-23241061
[Presentation] SOLiDによる微生物ゲノムの微小な構造変異の解析2012
- Author(s)
  瀬尾茂人, インベイウェン, 竹中要一, 四方哲也, 松田秀雄
- Organizer
  NGS現場の会第二回研究会
- Place of Presentation
  ホテル阪急エキスポパーク[本館B1F]多目的ホール(オービットホール)
- Year and Date
  2012-05-24
- Data Source
  KAKENHI-PROJECT-23241061
[Presentation] Disturbing native regulations by a synthetic promoter reduced the noise in gene expression.2012
- Author(s)
  Bei-Wen Ying, Saburo Tsuru, Tetsuya Yomo.
- Organizer
  COLD SPRING HARBOR ASIA CONFERENCE Synthetic Biology
- Place of Presentation
  Suzhou Dushu Lake Conference Center, China
- Data Source
  KAKENHI-PROJECT-23241061
[Presentation] Growth rate correlated genome-wide gene expression pattern in E. coli.2012
- Author(s)
  松本悠希, 津留三良, インベイウェン, 四方哲也
- Organizer
  第35回日本分子生物学会年会
- Place of Presentation
  福岡国際会議場・マリンメッセ福岡（福岡県）
- Data Source
  KAKENHI-PROJECT-23241061
[Presentation] SOLiDによる微生物ゲノムの微小な構造変異の解析2012
- Author(s)
  瀬尾茂人，インベイウェン，竹中要一，四方哲也，松田秀雄
- Organizer
  NGS現場の会　第二回研究会
- Place of Presentation
  ホテル阪急エキスポパーク [本館Ｂ1Ｆ] 多目的ホール（オービットホール）（大阪府）
- Data Source
  KAKENHI-PROJECT-23241061
[Presentation] Reduction in genome size decreased fluctuation in gene expression.2011
- Author(s)
  Bei-Wen Ying, Shigeto Seno, Tetsuya Yomo
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-23241061
[Presentation] Genomic diversity in an evolved thermal adaptive Escherichia coli population2011
- Author(s)
  Iijima,L., Tsuru,S., Ying, B., Yomo, T
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-23241061
[Presentation] Gene expression profiling of genetically rewired Escherichia coli strains in response to starvation.2011
- Author(s)
  Yoshie Murakami, Saburo Tsuru, Bei-Wen Ying, Tetsuya Yomo.
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-23241061
[Presentation] Genomic diversity in an evolved thermal adaptive Escherichia coli population.2011
- Author(s)
  Leo Iijima, Sabro Tsuru, Bei-Wen Ying, Tetsuya Yomo
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-23241061
[Presentation] Synthetic proto-operons for stochastic adaptation.2011
- Author(s)
  Ying, et al
- Organizer
  17th International Biophysics Conference
- Place of Presentation
  Beijing, China
- Year and Date
  2011-11-03
- Data Source
  KAKENHI-PROJECT-22657059
[Presentation] Stochastic adaptation mediated by synthetic proto-operons2011
- Author(s)
  BW Ying, S Tsuru & T Yomo
- Organizer
  Bioinspired Materials and Functionalities
- Place of Presentation
  Groningen, The Netherlands
- Data Source
  KAKENHI-PROJECT-22657059
[Presentation] Adaptive response of rewired Escherichia coli strains in response to starvation2011
- Author(s)
  Y Murakami, S Tsuru, BW Ying & T Yomo
- Organizer
  International Symposium on Synthesizing life and biological systems
- Place of Presentation
  Osaka, Japan
- Data Source
  KAKENHI-PROJECT-22657059
[Presentation] Synthetic proto-operons for stochastic adaptation2011
- Author(s)
  BW Ying, S Tsuru & T Yomo
- Organizer
  The 17th International Biophysics Conference
- Place of Presentation
  Beijing, China
- Year and Date
  2011-11-03
- Data Source
  KAKENHI-PROJECT-22657059
[Presentation] Synthetic toggle switch for selective gene expression in bacteria2010
- Author(s)
  Y Matsumoto, Y Ito, BW Ying & T Yomo
- Organizer
  IBIO2010
- Place of Presentation
  Dalian, China
- Year and Date
  2010-07-27
- Data Source
  KAKENHI-PROJECT-22657059
[Presentation] Flexible Gene Expression to Starvation out of Native Regulatory Mechanisms2010
- Author(s)
  S Tsuru, N Yasuda, BW Ying, A Kashiwagi & T Yomo
- Organizer
  The 11th International Conference on Systems Biology
- Place of Presentation
  Edinburgh, UK
- Year and Date
  2010-10-11
- Data Source
  KAKENHI-PROJECT-22657059
[Presentation] Biological Noise Induced Gene Production in Bacteria-a Universal Principle in the Adaptive Response to Starvation2010
- Author(s)
  BW Ying, S Tsuru, Y Matsumoto, Y Shimizu, Y Ito & T Yomo
- Organizer
  IBIO2010
- Place of Presentation
  Dalian, China
- Year and Date
  2010-07-25
- Data Source
  KAKENHI-PROJECT-22657059
[Presentation] Biological Noise Induced Gene Production in Bacteria2010
- Author(s)
  B.W.Ying
- Organizer
  IBIO2010
- Place of Presentation
  中国
- Year and Date
  2010-07-25
- Data Source
  KAKENHI-PROJECT-22657059
[Presentation] Flexible Gene Expression to Starvation out of Native Regulatory Mechanisms2010
- Author(s)
  S.Tsuru, B.W.Ying
- Organizer
  ICSB2010
- Place of Presentation
  イギリス
- Year and Date
  2010-10-12
- Data Source
  KAKENHI-PROJECT-22657059
[Presentation] Synthetic Toggle Switch for Selective Gene Expression in Bacteria2010
- Author(s)
  Y.Matsumoto, B.W.Ying
- Organizer
  IBIO2010
- Place of Presentation
  中国
- Year and Date
  2010-07-27
- Data Source
  KAKENHI-PROJECT-22657059
[Presentation] 高温適応進化研究に適した新たな選択指標を持つ大腸菌株の作成
- Author(s)
  清水裕貴, 花神彩香, インベイウェン, 岸本利彦, 四方哲也
- Organizer
  第36回日本分子生物学会年会
- Place of Presentation
  神戸ポートアイランド
- Data Source
  KAKENHI-PROJECT-23241061
[Presentation] 高温適応進化におけるgroL変異の機能解析1　～高温適応初期におけるgroL変異の機能解析～
- Author(s)
  松浦梨恵, 鶴切真友美, 花神彩香, インベイウェン, 岸本利彦, 四方哲也
- Organizer
  第36回日本分子生物学会年会
- Place of Presentation
  神戸ポートアイランド
- Data Source
  KAKENHI-PROJECT-23241061
[Presentation] 適応進化研究に適した新たな選択指標をもつ大腸菌株の作製
- Author(s)
  清水裕貴, 花神彩香, インベイウェン, 岸本利彦, 四方哲也
- Organizer
  日本進化学会第15回大会
- Place of Presentation
  筑波大学
- Data Source
  KAKENHI-PROJECT-23241061
[Presentation] ゲノム再編大腸菌における表現型及び全遺伝子発現の変化と適応
- Author(s)
  村上由衣, 松本悠希, 津留三良, Ying Bei-wen, 四方哲也
- Organizer
  第36回日本分子生物学会年会
- Place of Presentation
  神戸ポートアイランド
- Data Source
  KAKENHI-PROJECT-23241061
[Presentation] Growth rate dependent effect on gene expression under environmental perturbation.
- Author(s)
  Yuki Matsumoto, Yoshie Murakami, Saburo Tsuru, Bei-Wen Ying, Tetsuya Yomo.
- Organizer
  International Workshop on Quantitative Biology 2013(IWQB2013)
- Place of Presentation
  Icho-kaikan, Suita Campus Osaka University
- Data Source
  KAKENHI-PROJECT-23241061

1. YOMO Tetsuya (00222399)

# of Collaborated Projects: 1 results

# of Collaborated Products: 20 results
2. KISHIMOTO Toshihiko (90339200)

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
3. 津留三良

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results

YING Bei-Wen イン ベイウェン

Ying Bei-Wen イン ベイウェン

YING Beiwen イン ベイウェン

Research Projects

Research Products

Co-Researchers

細胞培養のデータ駆動型最適化の基盤技術の開発Principal Investigator

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Mechanisms of the correlation between genome reduction and growth ratePrincipal Investigator

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人工的遺伝子回路の発現レベルの予測モデルの構築Principal Investigator

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E. coli cells growing under starvationPrincipal Investigator

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細胞増殖に伴う集団秩序の維持Principal Investigator

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Study on genomic evolution of thermal adaptive Escherichia coli.

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Construction of cell differentiation model by bacterial cellsPrincipal Investigator

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[Book] Synthetic Biology2013

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[Book] Built-in synthetic gene circuits in Escherichia coli-methodology and applications. Advances in Applied Biotechnology I(ed. M Petre)2012

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[Book] Advances in Applied Biotechnology2012

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[Book] Advances in Applied Biotechnology I(分担)2012

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[Book] Method in Molecular Biology (Synthetic Biology)(分担)2012

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[Book] Construction of synthetic gene circuits in the Escherichia coli genome. Methods in Molecular Biology(eds. K Polizzi & C Kontoravdi)

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[Journal Article] Machine learning-assisted discovery of growth decision elements by relating bacterial population dynamics to environmental diversity.2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Machine learning-assisted discovery of growth decision elements by relating bacterial population dynamics to environmental diversity.2022

Author(s)

YING Bei-Wen インベイウェン

Ying Bei-Wen インベイウェン

YING Beiwen インベイウェン