MATSUI Akihiro 松井章浩

Researcher Number	90443027
Other IDs
Affiliation (based on the past Project Information) *help	2013: 独立行政法人理化学研究所, 環境資源科学研究センター, 特別研究員 2013: 独立行政法人理化学研究所, 環境資源科学研究センター, 研究員 2011: 独立行政法人理化学研究所, 植物ゲノム発現研究チーム, 研究員
Review Section/Research Field	Except Principal Investigator Plant molecular biology/Plant physiology / Plant nutrition/Soil science
Keywords	Except Principal Investigator 植物 / 遺伝子 / small RNA / 環境ストレス応答 / RNA制御 / アンチセンスRNA / 発現制御 / ストレス / 植物分子機能 / マイクロアレイ … More / 微生物 / 土壌学 / DNAマイクロアレイ / 遺伝子発現 / 共生関係 / アーバスキュラー菌根菌 / 根粒菌 / ダイズ / 非翻訳性RNA / タイリングアレイ解析 / シロイヌナズナ / RNA-dependent RNA polymerase / 非翻訳型RNA / ゲノム Less

Identification of novel siRNA pathways involved in plant environmental stress responses
- Principal Investigator
  
  SEKI Motoaki
- Project Period (FY)
  2012
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Plant molecular biology/Plant physiology
- Research Institution
  Institute of Physical and Chemical Research
Transcription profiles of host plant genes induced in the rhizobial and arbuscular mycorrhizal symbioses of soybean root
- Principal Investigator
  
  SAKAMOTO Kazunori
- Project Period (FY)
  2011 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Plant nutrition/Soil science
- Research Institution
  Chiba University
Analysis of stress-responsive non-coding antisense RNAs that are co-expressed with sense RNAs
- Principal Investigator
  
  SEKI Motoaki
- Project Period (FY)
  2009 – 2011
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Plant molecular biology/Plant physiology
- Research Institution
  The Institute of Physical and Chemical Research

All 2013 2012 2011 2010 2009 Other

All Journal Article Presentation Book

[Book] Methods in Molecular Biology-Plant Stress Tolerance2010
- Author(s)
  Matsui, A.
- Publisher
  Humana Press Inc.(in press)
- Data Source
  KAKENHI-PROJECT-21570056
[Book] Arabidopsis tiling array analysis to identify the stress-responsive genes. In "Methods in Molecular Biology-Plant Stress Tolerance(Edited by Dr. Ramanjulu Sunkar)"2010
- Author(s)
  Matsui, A., Ishida, J., Morosawa, T., Okamoto, M., Kim, J. M., Kurihara, Y., Kawashima, M., Tanaka, M., To, T., Nakaminami, K., Kaminuma, E., Endo, T., Mochizuki, Y., Kawaguchi, S., Kobayashi, N., Toyoda, T., Shinozaki, K. and Seki, M.
- Publisher
  Humana Press
- Data Source
  KAKENHI-PROJECT-21570056
[Journal Article] Arabidopsis non-coding RNA regulation in abiotic stress responses (Review)2013
- Author(s)
  Matsui, A. , Nguyen, A.H. , Nakaminami, K. , Seki, M.
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 14 Issue: 11 Pages: 22642-22654
- DOI
  10.3390/ijms141122642
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23380042, KAKENHI-PROJECT-24657041, KAKENHI-PROJECT-25850247
[Journal Article] Positional correlation analysis improves reconstruction of full-length transcript and alternative isoform from noisy array signals or short reads2012
- Author(s)
  Kawaguchi, S., Iida, K., Harada, E., Hanada, K., Matsui, A., Okamoto, M., Shinozaki, K., Seki, M. and Toyoda, T.
- Journal Title
  
  Bioinformatics
  
  Volume: 28 Pages: 929-937
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570056
[Journal Article] Positional correlation analysis improves reconstruction of full-length transcript and alternative isoform from noisy array signals or short reads2012
- Author(s)
  Kawaguchi, S., Iida, K., Harada, E., Hanada, K., Matsui, A., Okamoto, M., Shinozaki, K., Seki, M. and Toyoda, T.
- Journal Title
  
  Bioinformatics
  
  Volume: 28 Issue: 7 Pages: 929-937
- DOI
  10.1093/bioinformatics/bts065
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24657041
[Journal Article] RNA regulation in plant abiotic stress responses2011
- Author(s)
  Nakaminami, K., Matsui, A., Shinozaki, K. and Seki, M.
- Journal Title
  
  BBA-Gene Regulatory Mechanisms
  
  Volume: 19 Pages: 149-153
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570056
[Journal Article] ARTADE2DB : Improved Statistical Inferences for Arabidopsis Gene Functions and Structure Predictions by Dynamic-Structure-Based Dynamic Expression(DSDE) Analyses2011
- Author(s)
  Iida, K., Kawaguchi, S., Kobayashi, N., Yoshida, Y., Ishii, M., Harada, E., Hanada, K., Matsui, A., Okamoto, M., Seki, M. and Toyoda, T.
- Journal Title
  
  Plant Cell Physiol
  
  Volume: 52 Pages: 254-264
- NAID
  10029708540
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570056
[Journal Article] Arabidopsis tiling array analysis to identify the stress-responsive genes.2010
- Author(s)
  Matsui, et al.
- Journal Title
  
  Methods in Molecular Biology-Plant Stress Tolerance (Edited by R.Sunkar)
  
  Volume: 639 Pages: 141-155
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Transcription profiles of host plant genes induced by rhizobial, AM fungal and dual inoculations in soybean root2013
- Author(s)
  Sakamoto, K., Ogiwara, N., Kaji, T., Seki, M., Matsui, A., Ishida, J. and Tanaka, M
- Organizer
  18th International Congress on Nitrogen Fixation
- Place of Presentation
  Phoenix Seagaia Resort (Miyazaki city)
- Year and Date
  2013-10-16
- Data Source
  KAKENHI-PROJECT-23380042
[Presentation] 環境ストレス条件下での新規アンチセンスRNAの生成はRNA-dependent RNA polymeraseによって行われる2013
- Author(s)
  松井章浩ら
- Organizer
  第54回日本植物生理学会年会
- Place of Presentation
  岡山大学、岡山市、岡山
- Data Source
  KAKENHI-PROJECT-24657041
[Presentation] Novel Antisense RNA Regulation Functions in Plant Abiotic Stress Responses.2013
- Author(s)
  Matsui, A. et al.
- Organizer
  ASPB Satellite Meeting "Post-transcriptional Gene Regulation in Plants"
- Place of Presentation
  Providence, USA
- Invited
- Data Source
  KAKENHI-PROJECT-24657041
[Presentation] 環境ストレス条件下での新規アンチセンスRNAの生成はRNA-dependent RNA polymeraseによって行われる2013
- Author(s)
  松井章浩, 飯田慶, 山口勝司, 田中真帆, 石田順子, 諸澤妙子, 重信秀治, 篠崎一雄, 豊田哲郎, 関原明
- Organizer
  第54回日本植物生理学会年会
- Place of Presentation
  岡山
- Year and Date
  2013-03-21
- Data Source
  KAKENHI-PROJECT-24657041
[Presentation] Novel Antisense RNA Regulation Functions in Plant Abiotic Stress Responses2013
- Author(s)
  Matsui, A., Iida, K., Tanaka, M., Ishida, J., Morosawa, T., Takahashi, S., Toyoda, T. and Seki, M.
- Organizer
  ASPB Satellite Meeting "Post-transcriptional Gene Regulation in Plants"
- Place of Presentation
  Providence, USA
- Data Source
  KAKENHI-PROJECT-24657041
[Presentation] Novel antisense RNA and epigenetic regulation in plant abiotic stress responses2013
- Author(s)
  Matsui, A., Kim, J.M., Kim To, T., Iida, K., Tanaka, M., Ishida, J., Morosawa, T., Toyoda, T. and Seki, M.
- Organizer
  Abiotic Stress Workshop, Plant & Animal Genome ASIA 2013
- Place of Presentation
  Singapore
- Year and Date
  2013-03-18
- Data Source
  KAKENHI-PROJECT-24657041
[Presentation] Novel RNA and Epigenetic Regulations in Plant Abiotic Stress Responses2013
- Author(s)
  Matsui, A., Kim, J.M., To, T.K., Iida, K., Tanaka, M., Ishida, J., Morosawa, T., Toyoda, T. and Seki, M.
- Organizer
  2013 International Symposium on Agricultural Biotechnology : Emerging Topics on Plant Stress Biology
- Place of Presentation
  Taipei, Taiwan
- Data Source
  KAKENHI-PROJECT-24657041
[Presentation] ダイズの根粒共生系と菌根共生系で発現する宿主遺伝子の網羅的解析 (第 3 報) ダイズの野生型と根粒超着生変異体との比較2013
- Author(s)
  坂本一憲・梶智光・荻原菜津子・杉本百合恵・関原明・松井章浩・石田順子・田中真帆
- Organizer
  日本土壌肥料学会名古屋大会
- Place of Presentation
  名古屋大学(名古屋市)
- Year and Date
  2013-09-13
- Data Source
  KAKENHI-PROJECT-23380042
[Presentation] Novel RNA and Epigenetic Regulations in Plant Abiotic Stress Responses.2013
- Author(s)
  Matsui et al.
- Organizer
  2013 International Symposium on Agricultural Biotechnology: Emerging Topics on Plant Stress Biology
- Place of Presentation
  Taipei, Taiwan
- Invited
- Data Source
  KAKENHI-PROJECT-24657041
[Presentation] Biogenesis mechanism and function of stress-inducible non-protein-coding antisense RNAs in Arabidopsis2012
- Author(s)
  Seki, M., Iida, K., Yamaguchi, K., Tanaka, M., Ishida, J., Morosawa, T., Shigenobu, S., Shinozaki, K., Toyoda, T. and Matsui, A.
- Organizer
  BIT's 3rd Annual World on DNA and Genome day
- Place of Presentation
  Xi'an, China
- Data Source
  KAKENHI-PROJECT-24657041
[Presentation] RNA-dependent RNA polymeraseにより、環境ストレス下でアンチセンスRNAが生成する2012
- Author(s)
  松井章浩, ら
- Organizer
  第53回日本植物生理学会年会
- Place of Presentation
  京都産業大学(京都市)
- Year and Date
  2012-03-17
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Stress-inducible non-coding antisense RNAs are generated by RDR-mediated RNA dopying mechanism and function in the turnover of the sense mRNAs under abiotic stress2012
- Author(s)
  Matsui, A., Iida, K., Yamaguchi, K., Tanaka, M., Ishida, J., Morosawa, T., Kim, J.-M., Shigenobu, S., Shinozaki, K., Toyoda, T. and Seki, M.
- Organizer
  International Plant RNA Workshop 2012
- Place of Presentation
  Vienna, Austria
- Data Source
  KAKENHI-PROJECT-24657041
[Presentation] ダイズの根粒共生系と菌根共生系で発現する宿主遺伝子の網羅的解析 (第 2 報) 単独共生と二重共生の比較2012
- Author(s)
  坂本一憲・荻原菜津子・梶智光・杉本百合恵・関原明・松井章浩・石田順子・田中真帆
- Organizer
  日本土壌肥料学会鳥取大会
- Place of Presentation
  鳥取大学(鳥取市)
- Year and Date
  2012-09-04
- Data Source
  KAKENHI-PROJECT-23380042
[Presentation] Novel non-coding antisense RNA regulation in plant abiotic stress responses2012
- Author(s)
  Matsui, A., Iida, K., Tanaka, M., Ishida, J., Morosawa, T., Toyoda, T. and Seki, M.
- Organizer
  Cold Spring Harbor Conferences Asia, Plany Epigenetics, Stress and Evolution
- Place of Presentation
  Suzhou, China
- Data Source
  KAKENHI-PROJECT-24657041
[Presentation] センス鎖遺伝子と共発現するストレス応答性のアンチセンスRNAの生成機構の解析2011
- Author(s)
  松井章浩, ら
- Organizer
  第52回日本植物生理学会年会
- Place of Presentation
  東北大学(仙台)
- Year and Date
  2011-03-20
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Biogenesis mechanism and function of stress-inducible non-coding antisense RNAs2011
- Author(s)
  Matsui, A., et al
- Organizer
  International Plant RNA Workshop 2011
- Place of Presentation
  理研横浜研究所(横浜市)(招待講演)
- Year and Date
  2011-06-20
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] A survey and analysis of regulated alternative splicing events in Arabidopsis thaliana using genome tiling array and mRNA-seq2011
- Author(s)
  Iida, K., Kawaguchi, S., Harada, E., Matsui, A., Seki, M. and Toyoda, T.
- Organizer
  International Plant RNA Workshop 2011
- Place of Presentation
  Yokohama
- Year and Date
  2011-06-20
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Novel RNA and chromatin regulation in plant abiotic stress responses2011
- Author(s)
  Matsui, A., Kim, J. M., To, K. T., Nakaminami, K., Ishida, J., Morosawa, T., Tanaka, M., Kobayashi, S., Nishioka, T., Ushifusa, C., Shinozaki, K., Toyoda, T. and Seki, M.
- Organizer
  Abiotic Stress Workshop, Plant & Animal Genome XIX. The International Conference on the Status of Plant & Animal Genome Research
- Place of Presentation
  San Diego, USA
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Biogenesis mechanism and function of stress-inducible non-coding antisense RNAs2011
- Author(s)
  Matsui, A., Ishida, J., Morosawa, T., Tanaka, M., Endo, T. A., Iida, K., Toyoda, T., Shinozaki, K. and Seki, M.
- Organizer
  International Plant RNA Workshop 2011
- Place of Presentation
  Yokohama
- Year and Date
  2011-06-20
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Transcriptome analysis in abiotic stress conditions using Arabidopsis whole genome tiling array2010
- Author(s)
  Matsui, et al.
- Organizer
  21^<st> International Conference on Arabidopsis Research
- Place of Presentation
  パシフィコ横浜(横浜市)
- Year and Date
  2010-06-06
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Tiling array analysis under drought, cold, high-salinity and ABA treatment revealed the existence of sense-antisense transcripts of possible regulatory roles in Arabidopsis2010
- Author(s)
  Matsui, A.
- Organizer
  Keystone Symposia, RNA Silencing Mechanisms in Plants
- Place of Presentation
  サンタフェ(米国)
- Year and Date
  2010-02-22
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Genome-wide analysis of RNA regulation in plant abiotic stress responses2010
- Author(s)
  Seki, M., Matsui A., Ishida J., Morosawa T., Iida K., Endo T., Okamoto M., Tanaka M., Kawaguchi S., Shinozaki K. and Toyoda T.
- Organizer
  Society for Experimental Biology Annual Main Meeting 2010
- Place of Presentation
  Prague Czech Republic
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Novel RNA-and chromatin remodeling-mediated regulatory mechanisms in plant abiotic stress responses2010
- Author(s)
  Matsui A., Kim J-M., To K. T., Nakaminami K., Ishida J., Morosawa T., Tanaka M., Endo T., Kawaguchi S., Iida K., Shinozaki K., Toyoda T. and Seki, M.
- Organizer
  The 2010 Cold Spring Harbor Asia Conference on From Plant Biology to Crop Biotechnology
- Place of Presentation
  Suzhou, China
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] ARTADE2.0 : a mathematical integration of tiling array, CAGE and sequeince data to elucidate the transcriptional systems dynamics of Arabidopsis thaliana2009
- Author(s)
  Kawaguchi S., Hanada K., Iida K., Mochizuki Y., Matsui A., Okamoto M., Seki M., Shinozaki K. and Toyoda T.
- Organizer
  20th International Conference on Arabidopsis Research
- Place of Presentation
  Edinburgh, Scotlant UK
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Novel RNA- and chromatin remodeling- mediated regulatory mechanisms in plant abiotic stress responses2009
- Author(s)
  Matsui, A.
- Organizer
  9th IPMB Congress
- Place of Presentation
  セントルイス(米国)
- Year and Date
  2009-10-26
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Novel RNA-and chromatin remodeling-mediated regulatory mechanisms in plant abiotic stress resonses2009
- Author(s)
  Matsui A., Kim J-M., Ishida J., Morosawa T., Endo T., Okamoto M., Kurihara K., Nakaminami K., Tanaka M., To T., Nambara E., Hanada K., Mochizuki Y., Kawaguchi S., Toyoda T., Shinozak K. and Seki M.
- Organizer
  9th IPMB Congress
- Place of Presentation
  St. Louis, Missouri, USA
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Novel RNA-and chromatin remodelingmediated regulatory mechanisms in plant abiotic stress resonses2009
- Author(s)
  Matsui A., Kim J-M., Ishida J., Morosawa T., Okamoto M., Kim T., Nambara E., Mochizuki Y., Kawaguchi S., Toyoda T., Shinozak K. and Seki M.
- Organizer
  20th International Conference on Arabidopsis Research
- Place of Presentation
  Edinburgh, Scotlant UK
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Novel RNA- and chromatin remodeling- mediated regulatory mechanisms in plant abiotic stress responses2009
- Author(s)
  Matsui, A.
- Organizer
  20th International Conference on Arabidopsis Research
- Place of Presentation
  エジンバラ(英国)
- Year and Date
  2009-07-03
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] ダイズの根粒共生系と菌根共生系で発現する宿主遺伝子の網羅的解析（第3報）ダイズの野生型と根粒超着生変異体との比較
- Author(s)
  坂本一憲・梶智光・荻原菜津子・杉本百合恵・関原明・松井章浩・石田順子・田中真帆
- Organizer
  日本土壌肥料学会2013年度名古屋大会
- Place of Presentation
  名古屋大学（愛知県名古屋市）
- Data Source
  KAKENHI-PROJECT-23380042
[Presentation] Transcription profiles of host plant genes induced by rhizobial, AM fungal and dual inoculations in soybean root
- Author(s)
  Sakamoto, K., Ogiwara, N., Kaji, T., Seki, M., Matsui, A., Ishida, J. and Tanaka, M.
- Organizer
  18th International Congress on Nitrogen Fixation
- Place of Presentation
  フェニックス・シーガイア・リゾート（宮崎県宮崎市）
- Data Source
  KAKENHI-PROJECT-23380042

1. SEKI Motoaki (80281624)

# of Collaborated Projects: 2 results

# of Collaborated Products: 20 results
2. TOYODA Tetsuro (20342818)

# of Collaborated Projects: 1 results

# of Collaborated Products: 11 results
3. SAKAMOTO Kazunori (10225807)

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results

MATSUI Akihiro 松井 章浩

Research Projects

Research Products

Co-Researchers

Identification of novel siRNA pathways involved in plant environmental stress responses

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Transcription profiles of host plant genes induced in the rhizobial and arbuscular mycorrhizal symbioses of soybean root

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Analysis of stress-responsive non-coding antisense RNAs that are co-expressed with sense RNAs

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] Methods in Molecular Biology-Plant Stress Tolerance2010

Author(s)

Publisher

Data Source

[Book] Arabidopsis tiling array analysis to identify the stress-responsive genes. In "Methods in Molecular Biology-Plant Stress Tolerance(Edited by Dr. Ramanjulu Sunkar)"2010

Author(s)

Publisher

Data Source

[Journal Article] Arabidopsis non-coding RNA regulation in abiotic stress responses (Review)2013

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Positional correlation analysis improves reconstruction of full-length transcript and alternative isoform from noisy array signals or short reads2012

Author(s)

Journal Title

Data Source

[Journal Article] Positional correlation analysis improves reconstruction of full-length transcript and alternative isoform from noisy array signals or short reads2012

Author(s)

Journal Title

DOI

Data Source

[Journal Article] RNA regulation in plant abiotic stress responses2011

Author(s)

Journal Title

Data Source

[Journal Article] ARTADE2DB : Improved Statistical Inferences for Arabidopsis Gene Functions and Structure Predictions by Dynamic-Structure-Based Dynamic Expression(DSDE) Analyses2011

Author(s)

Journal Title

NAID

Data Source

[Journal Article] Arabidopsis tiling array analysis to identify the stress-responsive genes.2010

Author(s)

Journal Title

Data Source

[Presentation] Transcription profiles of host plant genes induced by rhizobial, AM fungal and dual inoculations in soybean root2013

Author(s)

Organizer

Place of Presentation

Year and Date

Data Source

[Presentation] 環境ストレス条件下での新規アンチセンスRNAの生成はRNA-dependent RNA polymeraseによって行われる2013

Author(s)

Organizer

Place of Presentation

Data Source

[Presentation] Novel Antisense RNA Regulation Functions in Plant Abiotic Stress Responses.2013

Author(s)

Organizer

Place of Presentation

Data Source

[Presentation] 環境ストレス条件下での新規アンチセンスRNAの生成はRNA-dependent RNA polymeraseによって行われる2013

Author(s)

Organizer

Place of Presentation

Year and Date

Data Source

[Presentation] Novel Antisense RNA Regulation Functions in Plant Abiotic Stress Responses2013

MATSUI Akihiro 松井章浩