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Oki Shinya  沖 真弥

… Alternative Names

OKI Shinya  沖 真弥

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Researcher Number 90452713
Other IDs
  • ORCIDhttps://orcid.org/0000-0002-4767-3259
Affiliation (Current) 2025: 熊本大学, 生命資源研究・支援センター, 教授
Affiliation (based on the past Project Information) *help 2024: 熊本大学, 生命資源研究・支援センター, 教授
2019 – 2023: 京都大学, 医学研究科, 特定准教授
2018 – 2019: 九州大学, 医学研究院, 講師
2017: 九州大学, 医学研究院, 助教
2011 – 2015: 九州大学, 医学(系)研究科(研究院), 助教
2013: 九州大学, 医学研究院, 助教
2009 – 2010: Kyushu University, 医学研究院, 助教
Review Section/Research Field
Principal Investigator
Developmental biology / Basic Section 48040:Medical biochemistry-related / Basic Section 56040:Obstetrics and gynecology-related / Transformative Research Areas, Section (III) / Complex Systems Disease Theory
Except Principal Investigator
Developmental biology / Transformative Research Areas, Section (III) / Basic Section 40020:Wood science-related / Basic Section 57070:Developmental dentistry-related / Complex systems / Biological Sciences
Keywords
Principal Investigator
エピゲノム / 空間トランスクリプトーム / Noncoding SNP / GWAS / ChIP-seq / 多分化能 / エピブラスト / Nodal / 転写制御機構 / 環境因子 … More / 一塩基多型 / ゲノム多型 / 空間オミクス解析 / 制御機構 / 遺伝子発現 / ATAC-seq / 空間オミクス / 転写因子 / SNP / 原条形成 / 中胚葉誘導 / マウス初期発生 / 多能性 / マウスエピブラスト / 動物 / 発生・分化 / シグナル伝達 / 細胞・組織 / 再生医学 … More
Except Principal Investigator
ゲノム / 転写因子 / 左右軸形成 / 遺伝 / 染色体 / 生殖細胞 / 生殖 / 壁層形成 / フェルラ酸 / 壁層 / 植物細胞壁 / S2層 / ヘミセルロース / S2層 / 二次壁 / 細胞壁 / 疾患モデル / 遺伝子変異 / 口唇口蓋裂 / Gata3 / レチノイン酸シグナル / ゲノム解析 / 動物モデル / 希少疾患 / 顎顔面形成不全 / ソフトウェア / 次世代シークエンス / ChIPシークエンス / 発生・分化 / 胚発生 / データーベース / 遺伝子発現 / ChIP-seq / データベース / 左右軸 / タンパク質-DNA相互作用 / 発現制御 / PLA法 / ゲノムDNA / 基盤・社会脳科学 / 社会脳科学 脳計測科学 / 脳科学 基盤 / 脳計測科学 / 基板・社会脳科学 / 基盤 / 脳科学 / 母仔分離超音波発声 / 神経発生 / REST / ヒストン修飾 / DNAメチル化 / エピジェネティクス / 精子形成 / 父加齢 / ダウンレギュレーション / リソソーム / 細胞シグナル / オルガネラ酸性化 / Wntシグナル / 小胞輸送 / エンドサイトーシス / 多能性幹細胞 / 原腸胚形成 / 細胞外シグナル Less
  • Research Projects

    (15 results)
  • Research Products

    (184 results)
  • Co-Researchers

    (47 People)
  •  生殖ライフスパンにおける空間オミクス解析Principal Investigator

    • Principal Investigator
      沖 真弥
    • Project Period (FY)
      2023 – 2027
    • Research Category
      Grant-in-Aid for Transformative Research Areas (A)
    • Review Section
      Transformative Research Areas, Section (III)
    • Research Institution
      Kumamoto University
      Kyoto University
  •  Dynamic reproductive lifespan: Life-long changes and fluctuations in germ cell function and risk for next generation

    • Principal Investigator
      北島 智也
    • Project Period (FY)
      2023 – 2027
    • Research Category
      Grant-in-Aid for Transformative Research Areas (A)
    • Review Section
      Transformative Research Areas, Section (III)
    • Research Institution
      Institute of Physical and Chemical Research
  •  微小領域に限定した高深度オミクス技術による催奇形性因子の作用機序解析Principal Investigator

    • Principal Investigator
      沖 真弥
    • Project Period (FY)
      2023 – 2024
    • Research Category
      Grant-in-Aid for JSPS Fellows
    • Review Section
      Basic Section 56040:Obstetrics and gynecology-related
    • Research Institution
      Kyoto University
  •  ゲノム多型に起因する疾患の発症プロセスの解明Principal Investigator

    • Principal Investigator
      沖 真弥
    • Project Period (FY)
      2022 – 2024
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 48040:Medical biochemistry-related
    • Research Institution
      Kumamoto University
      Kyoto University
  •  Regulatory mechanism of S2 layer formation of the cell wall in plants

    • Principal Investigator
      Tsuyama Taku
    • Project Period (FY)
      2020 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 40020:Wood science-related
    • Research Institution
      University of Miyazaki
  •  Investigation of genetic etiology of rare diseases with craniofacial deformities

    • Principal Investigator
      Kurosaka Hiroshi
    • Project Period (FY)
      2019 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 57070:Developmental dentistry-related
    • Research Institution
      Osaka University
  •  Toward understanding regulatory system of spatial gene expressionPrincipal Investigator

    • Principal Investigator
      Oki Shinya
    • Project Period (FY)
      2019 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 48040:Medical biochemistry-related
    • Research Institution
      Kyoto University
  •  Identification and functional analysis of noncoding SNPs causative for genetic disordersPrincipal Investigator

    • Principal Investigator
      OKi Shinya
    • Project Period (FY)
      2018 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Complex Systems Disease Theory
    • Research Institution
      Kyoto University
      Kyushu University
  •  How sperm epigenetic profiles impact on gene expression in the brain of offspring

    • Principal Investigator
      Osumi Noriko
    • Project Period (FY)
      2016 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      Tohoku University
  •  Development of a technology that can visualize interactions between genomic DNA and proteins in nuclei in situ

    • Principal Investigator
      Chikara Meno
    • Project Period (FY)
      2015 – 2017
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Developmental biology
    • Research Institution
      Kyushu University
  •  Analysis of molecular mechanism for initial left-right axis formation in the node of mouse embryos

    • Principal Investigator
      Chikara Meno
    • Project Period (FY)
      2014 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Developmental biology
    • Research Institution
      Kyushu University
  •  Mechanism to maintain pluripotency of the mouse epiblast via Nodal signaling.Principal Investigator

    • Principal Investigator
      Oki Shinya
    • Project Period (FY)
      2013 – 2015
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Developmental biology
    • Research Institution
      Kyushu University
  •  Screening of the direct target genes of Nodal signaling in the mouse epiblastPrincipal Investigator

    • Principal Investigator
      OKI Shinya
    • Project Period (FY)
      2011 – 2012
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Developmental biology
    • Research Institution
      Kyushu University
  •  Analysis of exracellular signal in cell community of early embryos

    • Principal Investigator
      MENO Chikara
    • Project Period (FY)
      2009 – 2013
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Biological Sciences
    • Research Institution
      Kyushu University
  •  体軸情報を備えた胚様体の作製Principal Investigator

    • Principal Investigator
      沖 真弥
    • Project Period (FY)
      2009 – 2010
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Developmental biology
    • Research Institution
      Kyushu University

All 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2010 2009 Other

All Journal Article Presentation Book Patent

  • [Book] ChIP-Atlas ~転写制御ランドスケープの歩き方~2023

    • Author(s)
      鄒 兆南, 沖 真弥
    • Publisher
      JSBi Bioinformatics Review
    • Data Source
      KAKENHI-PROJECT-23KF0048
  • [Book] 概論―空間トランスクリプトーム技術の最前線2021

    • Author(s)
      沖 真弥、大川恭行
    • Total Pages
      11
    • Publisher
      実験医学(羊土社)
    • ISBN
      9784758125475
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Book] ChIP-Atlas2021

    • Author(s)
      S. Oki、T. Ohta
    • Total Pages
      22
    • Publisher
      Practical Guide to Life Science Databases (Springer)
    • ISBN
      9789811658129
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Book] Photo-Isolation Chemistry:光照射による高解像度かつ高感度なトランスクリプトーム技術2021

    • Author(s)
      本田瑞季、沖 真弥
    • Total Pages
      7
    • Publisher
      実験医学(羊土社)
    • ISBN
      9784758125475
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Book] 局所的かつ高深度の空間トランスクリプトーム技術ーPhoto-Isolation Chemistry2020

    • Author(s)
      沖 真弥, 本田瑞季
    • Total Pages
      4
    • Publisher
      羊土社
    • ISBN
      9784758122481
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Book] 局所的かつ高深度の空間トランスクリプトーム技術ーPhoto-Isolation Chemistry2020

    • Author(s)
      沖 真弥, 本田瑞季
    • Total Pages
      4
    • Publisher
      未土社
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Book] 実験医学 372019

    • Author(s)
      沖真弥, 大田達郎
    • Total Pages
      4
    • Publisher
      羊土社
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Book] ChIP-Atlas:既報のChIP-seqデータをフル活用するためのウェブサービス2019

    • Author(s)
      沖 真弥, 大田達郎
    • Total Pages
      4
    • Publisher
      羊土社
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Book] THE LUNG perspectives 272019

    • Author(s)
      沖 真弥, 大田達郎
    • Total Pages
      7
    • Publisher
      メディカルレビュー社
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Book] ChIP-Atlas:公共 ChIP-seq データを統合的に活用するためのウェブサービス2019

    • Author(s)
      沖 真弥, 大田達郎
    • Total Pages
      7
    • Publisher
      メディカルレビュー社
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Journal Article] Elucidating disease-associated mechanisms triggered by pollutants via the epigenetic landscape using large-scale ChIP-Seq data2023

    • Author(s)
      Zou, Z., Yoshimura, Y., Yamanishi, Y., Oki, S
    • Journal Title

      Epigenetics & Chromatin

      Volume: 16 Issue: 1 Pages: 34-34

    • DOI

      10.1186/s13072-023-00510-w

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-23KF0048
  • [Journal Article] Ras signaling and RREB1 are required for the dissociation of medial edge epithelial cells in murine palatogenesis2022

    • Author(s)
      Inubushi Toshihiro、Fujiwara Ayaka、Hirose Takumi、Aoyama Gozo、Uchihashi Toshihiro、Yoshida Naoki、Shiraishi Yuki、Usami Yu、Kurosaka Hiroshi、Toyosawa Satoru、Tanaka Susumu、Watabe Tetsuro、Kogo Mikihiko、Yamashiro Takashi
    • Journal Title

      Disease Models & Mechanisms

      Volume: 15 Issue: 2

    • DOI

      10.1242/dmm.049093

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19H03858, KAKENHI-PROJECT-21K10137, KAKENHI-PROJECT-21K17159
  • [Journal Article] Photo-isolation chemistry for high-resolution and deep spatial transcriptome with mouse tissue sections2022

    • Author(s)
      Honda Mizuki、Kimura Ryuichi、Harada Akihito、Maehara Kazumitsu、Tanaka Kaori、Ohkawa Yasuyuki、Oki Shinya
    • Journal Title

      STAR Protocols

      Volume: 3 Issue: 2 Pages: 101346-101346

    • DOI

      10.1016/j.xpro.2022.101346

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K09522, KAKENHI-PROJECT-22K19275, KAKENHI-PLANNED-21H05292, KAKENHI-PUBLICLY-21H05755, KAKENHI-PUBLICLY-22H05594, KAKENHI-PROJECT-20H00456, KAKENHI-PUBLICLY-21H00232, KAKENHI-PUBLICLY-22H04676, KAKENHI-PUBLICLY-22H04696, KAKENHI-PROJECT-19H03424
  • [Journal Article] ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq?and Bisulfite-seq data2022

    • Author(s)
      Zou Zhaonan、Ohta Tazro、Miura Fumihito、Oki Shinya
    • Journal Title

      Nucleic Acids Research

      Volume: - Issue: W1 Pages: W175-W182

    • DOI

      10.1093/nar/gkac199

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Journal Article] TRANSDIRE: data-driven direct reprogramming by a pioneer factor-guided trans-omics approach2022

    • Author(s)
      Eguchi Ryohei、Hamano Momoko、Iwata Michio、Nakamura Toru、Oki Shinya、Yamanishi Yoshihiro
    • Journal Title

      Bioinformatics

      Volume: 38 Issue: 10 Pages: 2839-2846

    • DOI

      10.1093/bioinformatics/btac209

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K18327, KAKENHI-PROJECT-22K18173, KAKENHI-PLANNED-20H05797, KAKENHI-PROJECT-19H03424
  • [Journal Article] Epigenetic landscape of drug responses revealed through large-scale ChIP-seq data analyses2022

    • Author(s)
      Zou Zhaonan、Iwata Michio、Yamanishi Yoshihiro、Oki Shinya
    • Journal Title

      BMC Bioinformatics

      Volume: 23 Issue: 1 Pages: 51-51

    • DOI

      10.1186/s12859-022-04571-8

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21H04915, KAKENHI-PROJECT-19H03424
  • [Journal Article] Prior secondary cell wall formation is required for gelatinous layer deposition and posture control in gravi‐stimulated aspen2021

    • Author(s)
      Takata Naoki、Tsuyama Taku、Nagano Soichiro、Baba Kei'ichi、Yasuda Yuko、Sakamoto Shingo、Mitsuda Nobutaka、Taniguchi Toru
    • Journal Title

      The Plant Journal

      Volume: 108 Issue: 3 Pages: 725-736

    • DOI

      10.1111/tpj.15466

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19H03022, KAKENHI-PROJECT-20H03049
  • [Journal Article] High-depth spatial transcriptome analysis by photo-isolation chemistry.2021

    • Author(s)
      Honda M, Oki S, Kimura R, Harada A, Maehara K, Tanaka K, Meno C, Ohkawa Y.
    • Journal Title

      Nat Commun.

      Volume: 12 Issue: 1 Pages: 4416-4416

    • DOI

      10.1038/s41467-021-24691-8

    • NAID

      120007141968

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K21398, KAKENHI-PUBLICLY-20H04846, KAKENHI-PUBLICLY-20H05368, KAKENHI-PUBLICLY-20H05393, KAKENHI-PUBLICLY-21H00232, KAKENHI-PUBLICLY-21H00430, KAKENHI-PROJECT-20H00456, KAKENHI-PROJECT-19H03158, KAKENHI-PROJECT-19H03211, KAKENHI-PROJECT-19H03424
  • [Journal Article] Paternal age affects offspring via an epigenetic mechanism involving REST/NRSF.2021

    • Author(s)
      Yoshizaki Kaichi, Kimura Ryuichi, Kobayashi Hisato, Oki Shinya, Kikkawa Takako, Mai Lingling, Koike Kohei, Mochizumi Kentaro, Inada Hitoshi, Matsui Yasuhisa, Kono Tomohiro, Osumi Noriko
    • Journal Title

      EMBO Reports

      Volume: 22(2) Issue: 2

    • DOI

      10.15252/embr.202051524

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K08060, KAKENHI-PROJECT-20K07237, KAKENHI-PROJECT-19K18627, KAKENHI-INTERNATIONAL-16K21734, KAKENHI-ORGANIZER-16H06524, KAKENHI-PLANNED-16H06530, KAKENHI-PROJECT-19H03424, KAKENHI-PROJECT-18KT0024
  • [Journal Article] Detection of <scp>REST</scp> expression in the testis using epitope‐tag knock‐in mice generated by genome editing2021

    • Author(s)
      Kimura Ryuichi、U. Inoue Yukiko、Kikkawa Takako、Tatehana Misako、Morimoto Yuki、Inada Hitoshi、Oki Shinya、Inoue Takayoshi、Osumi Noriko
    • Journal Title

      Developmental Dynamics

      Volume: 251 Issue: 3 Pages: 525-535

    • DOI

      10.1002/dvdy.417

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K18627, KAKENHI-INTERNATIONAL-16K21734, KAKENHI-PUBLICLY-19H04922, KAKENHI-WRAPUP-21H00447, KAKENHI-PROJECT-19H03318, KAKENHI-PROJECT-20J22054, KAKENHI-PROJECT-20K06467, KAKENHI-PROJECT-20K07237, KAKENHI-PROJECT-19H03424
  • [Journal Article] A defined glycosylation regulatory network modulates total glycome dynamics during pluripotency state transition2021

    • Author(s)
      Pecori Federico、Yokota Ikuko、Hanamatsu Hisatoshi、Miura Taichi、Ogura Chika、Ota Hayato、Furukawa Jun-ichi、Oki Shinya、Yamamoto Kazuo、Yoshie Osamu、Nishihara Shoko
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 1276-1276

    • DOI

      10.1038/s41598-020-79666-4

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K15597, KAKENHI-PROJECT-18K06139, KAKENHI-PROJECT-19H03424, KAKENHI-PROJECT-18KT0024
  • [Journal Article] Genetic loss of importin α4 causes abnormal sperm morphology and impacts on male fertility in mouse2020

    • Author(s)
      Miyamoto Yoichi、Sasaki Mitsuho、Miyata Haruhiko、Monobe Yoko、Nagai Masahiro、Otani Mayumi、Whiley Penny A. F.、Morohoshi Akane、Oki Shinya、Matsuda Junichiro、Akagi Ken‐ichi、Adachi Jun、Okabe Masaru、Ikawa Masahito、Yoneda Yoshihiro、Loveland Kate L.、Oka Masahiro
    • Journal Title

      The FASEB Journal

      Volume: 34 Issue: 12 Pages: 16224-16242

    • DOI

      10.1096/fj.202000768rr

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K06455, KAKENHI-PROJECT-20H03444, KAKENHI-PROJECT-19H03424, KAKENHI-PROJECT-18KT0024
  • [Journal Article] Chromatin integration labeling for mapping DNA-binding proteins and modifications with low input.2020

    • Author(s)
      Tetsuya Handa, Akihito Harada, Kazumitsu Maehara, Shoko Sato, Masaru Nakao, Naoki Goto, Hitoshi Kurumizaka, Yasuyuki Ohkawa, Hiroshi Kimura.
    • Journal Title

      Nat Protoc.

      Volume: 15 Issue: 10 Pages: 3334-3360

    • DOI

      10.1038/s41596-020-0375-8

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K21398, KAKENHI-PLANNED-18H05534, KAKENHI-PUBLICLY-19H04970, KAKENHI-PUBLICLY-19H05244, KAKENHI-PUBLICLY-19H05425, KAKENHI-PUBLICLY-20H04846, KAKENHI-PUBLICLY-20H05368, KAKENHI-PUBLICLY-20H05393, KAKENHI-PROJECT-17H01417, KAKENHI-PROJECT-20H00456, KAKENHI-PROJECT-19H03158, KAKENHI-PROJECT-19H03211, KAKENHI-PROJECT-17K17719, KAKENHI-PROJECT-19H03424
  • [Journal Article] FTO Demethylates Cyclin D1 mRNA and Controls Cell-Cycle Progression2020

    • Author(s)
      Hirayama Mayumi、Wei Fan-Yan、Chujo Takeshi、Oki Shinya、Yakita Maya、Kobayashi Daiki、Araki Norie、Takahashi Nozomu、Yoshida Ryoji、Nakayama Hideki、Tomizawa Kazuhito
    • Journal Title

      Cell Reports

      Volume: 31 Issue: 1 Pages: 107464-107464

    • DOI

      10.1016/j.celrep.2020.03.028

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H03005, KAKENHI-PROJECT-20H03187, KAKENHI-PROJECT-19H03424, KAKENHI-PROJECT-19H03772, KAKENHI-PROJECT-18KT0024
  • [Journal Article] Dystrobrevin alpha gene is a direct target of the vitamin D receptor in muscle2020

    • Author(s)
      Tsoumpra Maria K、Sawatsubashi Shun、Imamura Michihiro、Fukumoto Seiji、Takeda Shin’ichi、Matsumoto Toshio、Aoki Yoshitsugu
    • Journal Title

      Journal of Molecular Endocrinology

      Volume: 64 Issue: 3 Pages: 195-208

    • DOI

      10.1530/jme-19-0229

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K07544, KAKENHI-PROJECT-18K19518, KAKENHI-PROJECT-18K16236, KAKENHI-PROJECT-18KT0024
  • [Journal Article] DDBJ Data Analysis Challenge: a machine learning competition to predict <i>Arabidopsis</i> chromatin feature annotations from DNA sequences2020

    • Author(s)
      Eli Kaminuma, Yukino Baba, Masahiro Mochizuki, Hirotaka Matsumoto, Haruka Ozaki, Toshitsugu Okayama, Takuya Kato, Shinya Oki, Takatomo Fujisawa, Yasukazu Nakamura, Masanori Arita, Osamu Ogasawara, Hisashi Kashima, Toshihisa Takagi
    • Journal Title

      Genes Genet. Syst.

      Volume: 95 Issue: 1 Pages: 43-50

    • DOI

      10.1266/ggs.19-00034

    • NAID

      130007834264

    • ISSN
      1341-7568, 1880-5779
    • Year and Date
      2020-02-01
    • Language
      English
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15H01704, KAKENHI-PROJECT-18KT0024, KAKENHI-PROJECT-18H03580, KAKENHI-PROJECT-19H03424
  • [Journal Article] High resolution spatial transcriptome analysis by photo-isolation chemistry2020

    • Author(s)
      Honda Mizuki、Oki Shinya、Harada Akihito、Maehara Kazumitsu、Tanaka Kaori、Meno Chikara、Ohkawa Yasuyuki
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2020.03.20.000984

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K22398, KAKENHI-PROJECT-18KT0024
  • [Journal Article] Direct reprogramming of human umbilical vein- and peripheral blood-derived endothelial cells into hepatic progenitor.2020

    • Author(s)
      Hiroki Inada, Miyako Udono , Kanae Matsuda-Ito, Kenichi Horisawa, Yasuyuki Ohkawa, Shizuka Miura, Takeshi Goya, Junpei Yamamoto, Masao Nagasaki, Kazuko Ueno, Daisuke Saitou, Mikita Suyama, Yoshihiko Maehara, Wataru Kumamaru, Yoshihiro Ogawa, Sayaka Sekiya, Atsushi Suzuki.
    • Journal Title

      cellsNat Commun.

      Volume: 11 Issue: 1 Pages: 5292-5292

    • DOI

      10.1038/s41467-020-19041-z

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K21398, KAKENHI-PUBLICLY-19H05244, KAKENHI-PUBLICLY-20H04846, KAKENHI-PUBLICLY-20H04949, KAKENHI-PROJECT-19H01054, KAKENHI-PROJECT-20H00456, KAKENHI-PROJECT-19H01177, KAKENHI-PROJECT-19H03424
  • [Journal Article] Update of the FANTOM web resource: expansion to provide additional transcriptome atlases2019

    • Author(s)
      Lizio Marina、Abugessaisa Imad、Noguchi Shuhei、Kondo Atsushi、Hasegawa Akira、Hon Chung Chau、de Hoon Michiel、Severin Jessica、Oki Shinya、Hayashizaki Yoshihide、Carninci Piero、Kasukawa Takeya、Kawaji Hideya
    • Journal Title

      Nucleic Acids Research

      Volume: 47 Issue: D1 Pages: D752-D758

    • DOI

      10.1093/nar/gky1099

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02902, KAKENHI-PROJECT-18KT0024
  • [Journal Article] Cis-control of Six1 expression in neural crest cells during craniofacial development2019

    • Author(s)
      Wu Zhaoming, Rao Yanxia, Zhang Sushan, Kim Eun-Jung, Oki Shinya, Harada Hidemitsu, Cheung Martin, Jung Han-Sung
    • Journal Title

      Developmental Dynamics

      Volume: 248 Issue: 12 Pages: 1264-1272

    • DOI

      10.1002/dvdy.109

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18KT0024, KAKENHI-PROJECT-19H03424
  • [Journal Article] Paternal age affects offspring’s behavior possibly via an epigenetic mechanism recruiting a transcriptional repressor REST2019

    • Author(s)
      Yoshizaki, K., Koike, T., Kimura, R., Kikkawa, T., Oki, S., Koike, K., Mochizuki, K., Inada, H., Kobayashi, H., Matsui, Y., Kono, T., Osumi, N.
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/550095

    • Open Access
    • Data Source
      KAKENHI-PROJECT-18K14999, KAKENHI-PROJECT-18KT0024
  • [Journal Article] Sustained expression of HeyL is critical for the proliferation of muscle stem cells in overloaded muscle.2019

    • Author(s)
      Fukuda S, Kaneshige A, Kaji T, Noguchi YT, Takemoto Y, Zhang L, Tsujikawa K, Kokubo H, Uezumi A, Maehara K, Harada A, Ohkawa Y, Fukada SI.
    • Journal Title

      eLife

      Volume: 8

    • DOI

      10.7554/elife.48284

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K19740, KAKENHI-PUBLICLY-18H04802, KAKENHI-PUBLICLY-18H04904, KAKENHI-PUBLICLY-19H04970, KAKENHI-PUBLICLY-19H05244, KAKENHI-PUBLICLY-19H05425, KAKENHI-PROJECT-17H03608, KAKENHI-PROJECT-19H03158, KAKENHI-PROJECT-19H03211, KAKENHI-PROJECT-19H04000, KAKENHI-PROJECT-18K19432, KAKENHI-PROJECT-19H03424
  • [Journal Article] LSD1 mediates metabolic reprogramming by glucocorticoids during myogenic differentiation2018

    • Author(s)
      K. Anan, S. Hino, N. Shimizu, A. Sakamoto, K. Nagaoka, R. Takase, K. Kohrogi, H. Araki, Y. Hino, S. Usuki, S. Oki, H. Tanaka, K. Nakamura, F. Endo, and M. Nakao
    • Journal Title

      Nucleic Acids Res.

      Volume: 18 Issue: 11 Pages: 5441-5454

    • DOI

      10.1093/nar/gky234

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15H04707, KAKENHI-PROJECT-17K09876, KAKENHI-PROJECT-15KK0332, KAKENHI-PROJECT-18KT0017, KAKENHI-PROJECT-17K10055, KAKENHI-PROJECT-18K19479, KAKENHI-PROJECT-16H05330, KAKENHI-PROJECT-18H02618, KAKENHI-PROJECT-16K07215, KAKENHI-PROJECT-18KT0024
  • [Journal Article] ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data.2018

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Hideki Hatanaka, Osamu Ogasawara, Yoshihiro Okuda, Hideya Kawaji, Ryo Nakaki, Jun Sese, Chikara Meno
    • Journal Title

      EMBO reports

      Volume: 19 Issue: 12

    • DOI

      10.15252/embr.201846255

    • NAID

      120006649027

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-16H06469, KAKENHI-PROJECT-15H05713, KAKENHI-PROJECT-17H01571, KAKENHI-PROJECT-18KT0024
  • [Journal Article] Repression of somatic genes by selective recruitment of HDAC3 by BLIMP1 is essential for mouse primordial germ cell fate determination2018

    • Author(s)
      Mochizuki Kentaro, Hayashi Yohei, Sekinaka Tamotsu, Otsuka Kei, Ito-Matsuoka Yumi, Kobayashi Misato, Oki Shinya, Takehara Asuka, Kono Tomohiro, Osumi Noriko, Matsui Yasuhisa
    • Journal Title

      Cell Reports

      Volume: 24 Issue: 10 Pages: 2682-2693

    • DOI

      10.1016/j.celrep.2018.07.108

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-17K17594, KAKENHI-PLANNED-16H06530, KAKENHI-PROJECT-17J02039, KAKENHI-PROJECT-17K19372, KAKENHI-PROJECT-15H05579, KAKENHI-PUBLICLY-18H04875, KAKENHI-PROJECT-18KT0024
  • [Journal Article] ChIP-seq analysis of genomic binding regions of five major transcription factors highlights a central role for ZIC2 in the mouse epiblast stem cell gene regulatory network2017

    • Author(s)
      Matsuda Kazunari、Mikami Tomoyuki、Oki Shinya、Iida Hideaki、Andrabi Munazah、Boss Jeremy M.、Yamaguchi Katsushi、Shigenobu Shuji、Kondoh Hisato
    • Journal Title

      Development

      Volume: 144 Pages: 1948-1958

    • DOI

      10.1242/dev.143479

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26251024, KAKENHI-PLANNED-16H06530, KAKENHI-PROJECT-17H03688
  • [Journal Article] Chd2 regulates chromatin for proper gene expression toward differentiation in mouse embryonic stem cells2017

    • Author(s)
      Semba Yuichiro、Harada Akihito、Maehara Kazumitsu、Oki Shinya、Meno Chikara、Ueda Jun、Yamagata Kazuo、Suzuki Atsushi、Onimaru Mitsuho、Nogami Jumpei、Okada Seiji、Akashi Koichi、Ohkawa Yasuyuki
    • Journal Title

      Nucleic Acids Research

      Volume: 45 Issue: 15 Pages: 8758-8772

    • DOI

      10.1093/nar/gkx475

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16K15668, KAKENHI-PROJECT-17K19356, KAKENHI-PROJECT-17K19603, KAKENHI-PROJECT-26291051, KAKENHI-PUBLICLY-16H01219, KAKENHI-PUBLICLY-16H01550, KAKENHI-PUBLICLY-16H01577, KAKENHI-PLANNED-16H06530, KAKENHI-ORGANIZER-25112001, KAKENHI-PLANNED-25116010, KAKENHI-PROJECT-16H06391, KAKENHI-PROJECT-17H01571, KAKENHI-PROJECT-16H05450, KAKENHI-PROJECT-17H03608, KAKENHI-PROJECT-16K18479, KAKENHI-PUBLICLY-16H01319, KAKENHI-PROJECT-16K07099, KAKENHI-PROJECT-16H01850, KAKENHI-PUBLICLY-17H05623
  • [Journal Article] Hyperglycemia impairs left-right axis formation and thereby disturbs heart morphogenesis in mouse embryos.2015

    • Author(s)
      Hachisuga M, Oki S, Kitajima K, Ikuta S, Sumi T, Kato K, Wake N, Meno C.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 112 Issue: 38 Pages: 5300-5307

    • DOI

      10.1073/pnas.1504529112

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-26461637, KAKENHI-PROJECT-15K15608, KAKENHI-PUBLICLY-15H01517, KAKENHI-PROJECT-25670491, KAKENHI-PROJECT-25840087, KAKENHI-PROJECT-26291051
  • [Journal Article] Chd5 Regulates MuERV-L/MERVL Expression in Mouse Embryonic Stem Cells Via H3K27me3 Modification and Histone H3.1/H3.2.2015

    • Author(s)
      Hayashi M, Maehara K, Harada A, Semba Y, Kudo K, Takahashi H, Oki S, Meno C, Ichiyanagi K, Akashi K, Ohkawa Y.
    • Journal Title

      J Cell Biochem

      Volume: 117 Issue: 3 Pages: 780-792

    • DOI

      10.1002/jcb.25368

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K15365, KAKENHI-PROJECT-15K18457, KAKENHI-PLANNED-24118002, KAKENHI-PLANNED-25116010, KAKENHI-PROJECT-13J04024, KAKENHI-PROJECT-25503003, KAKENHI-PROJECT-26670130, KAKENHI-PROJECT-25840087, KAKENHI-PROJECT-26290064, KAKENHI-PROJECT-26291051, KAKENHI-PROJECT-15H04701
  • [Journal Article] SraTailor: graphical user interface software for processing and visualizing ChIP-seq data.2014

    • Author(s)
      Oki S, Maehara K, Ohkawa Y, Meno C
    • Journal Title

      Genes to Cells

      Volume: 19 Issue: 12 Pages: 919-926

    • DOI

      10.1111/gtc.12190

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-25670491, KAKENHI-PROJECT-25840087, KAKENHI-PROJECT-26290064, KAKENHI-PROJECT-26291051
  • [Journal Article] Self-regulated left-right asymmetric expression of Pitx2c in the developing limb2014

    • Author(s)
      Shiratori, H., Yashiro, Iwai, N., Oki, S., Ikawa, Y., Kanata, K., and Hamada, H.
    • Journal Title

      Dev. Biol.

      Volume: 395 Issue: 2 Pages: 331-341

    • DOI

      10.1016/j.ydbio.2014.09.002

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-ORGANIZER-24113001, KAKENHI-PLANNED-24113004, KAKENHI-PROJECT-25251029, KAKENHI-PROJECT-25840087, KAKENHI-PROJECT-26440124
  • [Journal Article] SraTailor: 誰でも使えるChIP-seqデータの可視化ツール2014

    • Author(s)
      沖 真弥
    • Journal Title

      実験医学

      Volume: 19 Pages: 3101-06

    • Data Source
      KAKENHI-PROJECT-25840087
  • [Journal Article] Wnt signaling regulates left-right axis formation in the node of mouse embryos2013

    • Author(s)
      Kitajima K, Oki S, Ohkawa Y, Sumi T, Meno C.
    • Journal Title

      Dev Biol.

      Volume: 15;380(2) Pages: 222-32

    • Data Source
      KAKENHI-PROJECT-23770254
  • [Journal Article] Epiblast ground state is controlled by canonical Wnt/β-catenin signaling in the postimplantation mouse embryo and epiblast stem cells2013

    • Author(s)
      Sumi T, Oki S, Kitajima K, Meno C.
    • Journal Title

      PLoS One

      Volume: 14;8(5)

    • Data Source
      KAKENHI-PROJECT-23770254
  • [Journal Article] Wnt signaling regulates left-right axis formation in the node of mouse embryos2013

    • Author(s)
      Kitajima, Oki, Ohkawa, Sumi, Meno
    • Journal Title

      Dev Biol

      Volume: 380 Issue: 2 Pages: 222-32

    • DOI

      10.1016/j.ydbio.2013.05.011

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-21116002, KAKENHI-PROJECT-23310134, KAKENHI-PROJECT-23570233, KAKENHI-PROJECT-23770254, KAKENHI-PLANNED-25116010, KAKENHI-PROJECT-25670491, KAKENHI-PROJECT-25840087
  • [Journal Article] Epiblast ground state is controlled by canonical Wnt/ β-catenin signaling in the postimplantation mouse embryo and epiblast stem cells2013

    • Author(s)
      Sumi, Oki, Kitajima, Meno
    • Journal Title

      PLoS One

      Volume: 8 Issue: 5 Pages: e63378-e63378

    • DOI

      10.1371/journal.pone.0063378

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-21116002, KAKENHI-PROJECT-23570233, KAKENHI-PROJECT-23770254, KAKENHI-PROJECT-25670491, KAKENHI-PROJECT-25840087
  • [Journal Article] Restriction of Wnt signaling in the dorsal otocyst determines semicircular canal formation in the mouse embryo2012

    • Author(s)
      T.Noda, et al
    • Journal Title

      Developmental Biology

      Volume: 362 Issue: 1 Pages: 83-93

    • DOI

      10.1016/j.ydbio.2011.11.019

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-10J01348, KAKENHI-PLANNED-21116002, KAKENHI-PROJECT-23770254
  • [Journal Article] Restriction of Wnt signaling in the dorsal otocyst determines semicircular canal formation in the mouse embryo2012

    • Author(s)
      Noda T, Oki S, Kitajima K, Harada T, Komune S, Meno C.
    • Journal Title

      Dev Biol.

      Volume: 1;362(1) Pages: 83-93

    • Data Source
      KAKENHI-PROJECT-23770254
  • [Journal Article] Fate maps of ventral and dorsal pancreatic progenitor cells in early somite stage mouse embryos.2012

    • Author(s)
      Miki R, Yoshida T, Murata K, Oki S, Kume K, Kume S.
    • Journal Title

      Mech. Dev.

      Volume: 128 Issue: 11-12 Pages: 597-609

    • DOI

      10.1016/j.mod.2011.12.004

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23592616, KAKENHI-PROJECT-23770254
  • [Journal Article] Fate maps of ventral and dorsal pancreatic progenitor cells in early somite stage mouse embryos2012

    • Author(s)
      Miki R, Yoshida T, Murata K, Oki S, Kume K, Kume S.
    • Journal Title

      Mech Dev.

      Volume: 128(11-12) Pages: 597-609

    • Data Source
      KAKENHI-PROJECT-23770254
  • [Journal Article] マウス初期発生における硫酸化グリコサミノグリカンの役割2010

    • Author(s)
      沖真弥, 目野主税
    • Journal Title

      福岡医学雑誌

      Volume: 101-8 Pages: 157-64

    • NAID

      120002646785

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21657059
  • [Journal Article] Dissecting the role of Fgf signaling during gastrulation and left-right axis formation in mouse embryos using chemical inhibitors.2010

    • Author(s)
      Oki, et al.
    • Journal Title

      Developmental Dynamics.

      Volume: 239 Pages: 1768-1778

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-21116002
  • [Journal Article] Dissecting the Role of Fgf Signaling During Gastrulation and Left-Right Axis Formation in Mouse Embryos Using Chemical Inhibitors2010

    • Author(s)
      Oki, et al
    • Journal Title

      Developmental Dynamics

      Volume: 239-6 Pages: 1768-78

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21657059
  • [Journal Article] Dissecting the role of Fgf signaling during gastrulation and left-right axis formation in mouse embryos using chemical inhibitors2010

    • Author(s)
      Oki, Kitajima, Meno
    • Journal Title

      Dev Dyn

      Volume: 239 Issue: 6 Pages: 1768-1778

    • DOI

      10.1002/dvdy.22282

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-21116002
  • [Journal Article] Dissecting the Role of Fgf Signaling During Gastrulation and Left-Right Axis Formation in Mouse Embryos Using Chemical Inhibitors2010

    • Author(s)
      Oki, et al
    • Journal Title

      Developmental Dynamics (in press)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21657059
  • [Journal Article] Reversal of left-right asymmetry induced by aberrant Nodal signaling in the node of mouse embryos2009

    • Author(s)
      Oki, et al
    • Journal Title

      Development 136

      Pages: 3917-3925

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21657059
  • [Journal Article] Reversal of left-right asymmetry induced by aberrant Nodal signaling in the node of mouse embryos.2009

    • Author(s)
      Oki, et al.
    • Journal Title

      Development 136

      Pages: 3917-3925

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-21116002
  • [Patent] 核酸断片及びその使用2021

    • Inventor(s)
      大川恭行, 沖 真弥, 原田哲仁
    • Industrial Property Rights Holder
      大川恭行, 沖 真弥, 原田哲仁
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2021-025468
    • Filing Date
      2021
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Patent] 核酸断片及びその使用2021

    • Inventor(s)
      大川恭行, 沖 真弥, 原田哲仁
    • Industrial Property Rights Holder
      大川恭行, 沖 真弥, 原田哲仁
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2021-025468
    • Filing Date
      2021
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Patent] オリゴヌクレオチド、オミクス解析方法及びオミクス解析用キット2019

    • Inventor(s)
      沖真弥, 大川恭行
    • Industrial Property Rights Holder
      沖真弥, 大川恭行
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2019-094216
    • Filing Date
      2019
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Patent] オリゴヌクレオチド、オミクス解析方法及びオミクス解析用キット2019

    • Inventor(s)
      沖真弥, 大川恭行
    • Industrial Property Rights Holder
      沖真弥, 大川恭行
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2019-094216
    • Filing Date
      2019
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 大規模ChIP-seq データを活用し環境汚染物質による疾患誘発機序に迫る2023

    • Author(s)
      鄒 兆南, 吉村侑花, 山西芳裕, 沖 真弥
    • Organizer
      第12回生命医薬情報学連合大会
    • Data Source
      KAKENHI-PROJECT-23KF0048
  • [Presentation] 光単離化学(PIC)による高解像度かつ高深度の空間オミクス解析2022

    • Author(s)
      沖 真弥
    • Organizer
      JST-CRDS 俯瞰ワークショップ
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] 時空間的な遺伝子発現制御のしくみを探る2022

    • Author(s)
      沖 真弥
    • Organizer
      東京大学 理学系研究科 生物情報科学科・黒田研セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] Photo-isolation chemistryによる局所的高深度トランスクリプトーム解析2022

    • Author(s)
      沖 真弥
    • Organizer
      第127回日本解剖学会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] Photo-Isolation-Chemistry (PIC):局所的な高深度トランスクリプトーム解析2022

    • Author(s)
      沖 真弥
    • Organizer
      基礎生物学研究所・新規モデル生物開発センター・テクニカルワークショップ
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] Prior secondary cell wall formation is required for gelatinous layer deposition and posture control in gravi-stimulated aspen2022

    • Author(s)
      Naoki Takata, Taku Tsuyama, Soichiro Nagano, Kei’ichi Baba, Yuko Yasuda, Shingo Sakamoto, Nobutaka Mitsuda and Toru Taniguchi
    • Organizer
      第63回植物生理学会
    • Data Source
      KAKENHI-PROJECT-20H03049
  • [Presentation] ChIP-Atlas update: Bisulfite-seqとATAC-seqデータを統合2021

    • Author(s)
      沖 真弥
    • Organizer
      第44回日本分子生物学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] 時空間的な遺伝子発現制御のしくみを探る2021

    • Author(s)
      沖 真弥
    • Organizer
      JST・理研共催 バイオDXシンポジウム
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] 空間的な遺伝子発現制御のしくみを探る2021

    • Author(s)
      沖 真弥
    • Organizer
      第85回日本循環器学会学術集会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 空間的な遺伝子発現制御のしくみを探る2021

    • Author(s)
      沖 真弥
    • Organizer
      第85回日本循環器学会学術集会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] Data-driven and technical approaches to understand spatial gene regulation2021

    • Author(s)
      沖 真弥
    • Organizer
      奈良先端大学院大学講義「バイオサイエンスにおけるビッグデータ」
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] Prior secondary cell wall formation is required for gelatinous layer deposition and posture control in gravi-stimulated aspen2021

    • Author(s)
      Naoki Takata, Taku Tsuyama, Soichiro Nagano, Kei’ichi Baba, Yuko Yasuda, Shingo Sakamoto, Nobutaka Mitsudae Toru Taniguchi
    • Organizer
      7th International Conference on Plant Cell Wall Biology
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20H03049
  • [Presentation] Data-driven and technical approaches to understand spatial gene regulation2021

    • Author(s)
      沖 真弥
    • Organizer
      京都大学医学研究科・神経科学教育コース
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] Data-driven and technical approaches to understand spatial gene regulation2021

    • Author(s)
      沖 真弥
    • Organizer
      熊本大学リエゾンラボ研究会・HIGO最先端研究セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] Prior secondary cell wall formation is required for gelatinous layer deposition and posture control in gravi-stimulated aspen.2021

    • Author(s)
      Naoki Takata, Taku Tsuyama, Soichiro Nagano, Kei’ichi Baba, Yuko Yasuda, Shingo Sakamoto, Nobutaka Mitsuda, Toru Taniguchi
    • Organizer
      7th International Conference on Plant Cell Wall Biology
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20H03049
  • [Presentation] 時空間的な遺伝子発現制御のしくみを探る2021

    • Author(s)
      沖 真弥
    • Organizer
      日本生物工学会東日本支部 生物工学フォーラム
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] Data-driven and technical approaches to understand spatial gene regulation2020

    • Author(s)
      沖 真弥
    • Organizer
      第43回日本分子生物学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] 空間的な遺伝子発現制御のしくみを探る2020

    • Author(s)
      沖 真弥
    • Organizer
      第9回生命医薬情報学連合大会 (IIBMP2020)
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-Atlas の使い方と使われ方2020

    • Author(s)
      沖 真弥
    • Organizer
      第9回生命医薬情報学連合大会 (IIBMP2020)
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] Data-driven and technical approaches to understand spatial gene regulation2020

    • Author(s)
      沖 真弥
    • Organizer
      RIKEN BDR seminar in Kobe
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] 遺伝子発現の時空間的な制御のしくみ2020

    • Author(s)
      沖 真弥
    • Organizer
      KBC第4回勉強会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] Data-driven and technical approaches to understand spatial gene regulation2020

    • Author(s)
      沖 真弥
    • Organizer
      WPI-IIIS Seminar
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] Data-driven and technical approaches to understand spatial gene regulation2020

    • Author(s)
      沖 真弥
    • Organizer
      WPI-IIIS Seminar
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 空間的な遺伝子発現制御のしくみを探る2020

    • Author(s)
      沖 真弥
    • Organizer
      第9回生命医薬情報学連合大会 (IIBMP2020)
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] Data-driven and technical approaches to understand spatial gene regulation2020

    • Author(s)
      沖 真弥
    • Organizer
      BDR seminar in Kobe
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-Atlas の使い方と使われ方2020

    • Author(s)
      沖 真弥
    • Organizer
      第9回生命医薬情報学連合大会 (IIBMP2020)
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] Data-driven and technical approaches to understand spatial gene regulation2020

    • Author(s)
      沖 真弥
    • Organizer
      第43回日本分子生物学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-seqビッグデータを統合解析し、薬剤の作用機序解明に迫る2020

    • Author(s)
      沖 真弥
    • Organizer
      京都大学「医学領域」産学連携推進機構/一般社団法人芝蘭会 産学情報交流会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] ChIP-Atlas: 公共 ChIP-seq データを利活用できる2020

    • Author(s)
      沖 真弥
    • Organizer
      第43回日本分子生物学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] ChIP-Atlas: 公共 ChIP-seq データを利活用できる2020

    • Author(s)
      沖 真弥
    • Organizer
      第43回日本分子生物学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 遺伝子発現の時空間的な制御のしくみ2020

    • Author(s)
      沖 真弥
    • Organizer
      KBC第4回勉強会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] ChIP-seqビッグデータを統合解析し、薬剤の作用機序解明に迫る2020

    • Author(s)
      沖 真弥
    • Organizer
      京都大学「医学領域」産学連携推進機構/一般社団法人芝蘭会 産学情報交流会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-Atlas: 既報ChIP-seqデータの統合データベース2019

    • Author(s)
      沖 真弥
    • Organizer
      統合データベース講習会:AJACS番町3
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-Atlas: 公共 ChIP-seq データを利活用できる2019

    • Author(s)
      沖 真弥
    • Organizer
      第42回日本分子生物学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-Atlas: 既報ChIP-seqデータの統合データベース2019

    • Author(s)
      沖 真弥
    • Organizer
      日本プロテオーム学会2019年大会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] 位置情報と遺伝子発現とその仕組み2019

    • Author(s)
      沖 真弥
    • Organizer
      新学術領域「個性創発脳」若手の会・技術支援講習会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] 公共ChIP-seqデータの利活用術2019

    • Author(s)
      沖 真弥
    • Organizer
      全薬工業 セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-Atlas の使い方とその応用2019

    • Author(s)
      沖 真弥
    • Organizer
      資生堂 セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] 公共ChIP-seqデータの利活用術2019

    • Author(s)
      沖 真弥
    • Organizer
      創価大学 セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 公共ChIP-seqデータの利活用術2019

    • Author(s)
      沖 真弥
    • Organizer
      新潟大学 セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 公共ChIP-seqデータをフル活用し遺伝性疾患の解明に挑む2019

    • Author(s)
      沖 真弥
    • Organizer
      北里大学 セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 公共ChIP-seqデータの利活用術2019

    • Author(s)
      沖 真弥
    • Organizer
      国立精神・神経医療研究センター セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] 公共ChIP-seqデータの統合解析2019

    • Author(s)
      沖 真弥
    • Organizer
      京都大学 セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] 位置情報と遺伝子発現とその仕組み2019

    • Author(s)
      沖 真弥
    • Organizer
      新学術領域「個性創発脳」若手の会・技術支援講習会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 薬効の作用点となる転写因子の特定と創薬への応用2019

    • Author(s)
      沖 真弥
    • Organizer
      日本たばこ医薬総合研究所 セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] ChIP-Atlas: 公共 ChIP-seq データを利活用できる2019

    • Author(s)
      沖 真弥
    • Organizer
      第42回日本分子生物学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] 公共ChIP-seqデータの利活用術2019

    • Author(s)
      沖 真弥
    • Organizer
      東京理科大学 セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] High resolution spatial transcriptomics method by photo-isolation chemistry2019

    • Author(s)
      Shinya Oki, Mizuki Honda, Akihito Harada, Kazumitsu Maehara, Kaori Tanaka, and Yasuyuki Ohkawa
    • Organizer
      EMBO/EMBL Symposium: Multiomics to Mechanisms - Challenges in Data Integration
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 公共ChIP-seqデータをフル活用し、遺伝性疾患の解明や創薬に挑む2019

    • Author(s)
      沖 真弥
    • Organizer
      次世代脳プロジェクト冬のシンポジウム2019
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 公共ChIP-seqデータの統合解析2019

    • Author(s)
      沖 真弥
    • Organizer
      京都大学 セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] High resolution spatial transcriptomics method by photo-isolation chemistry2019

    • Author(s)
      Shinya Oki, Mizuki Honda, Akihito Harada, Kazumitsu Maehara, Kaori Tanaka, and Yasuyuki Ohkawa
    • Organizer
      EMBO/EMBL Symposium: Multiomics to Mechanisms - Challenges in Data Integration
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] ChIP-Atlasをつないで使う2019

    • Author(s)
      沖 真弥
    • Organizer
      トーゴーの日シンポジウム2019
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data2019

    • Author(s)
      Shinya Oki
    • Organizer
      Lecture in College of Dentistry, Yonsei University
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] 公共ChIP-seqデータをフル活用し、遺伝性疾患の解明や創薬に挑む2019

    • Author(s)
      沖 真弥
    • Organizer
      質量分析インフォマティクス研究会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 薬効の作用点となる転写因子の特定と創薬への応用2019

    • Author(s)
      沖 真弥
    • Organizer
      日本たばこ医薬総合研究所 セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-Atlas: 既報ChIP-seqデータの統合データベース2019

    • Author(s)
      沖 真弥
    • Organizer
      統合データベース講習会:AJACS番町3
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data2019

    • Author(s)
      Shinya Oki
    • Organizer
      Lecture in College of Dentistry, Yonsei University
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 特定領域の発現情報を光照射で取り出す技術2019

    • Author(s)
      沖 真弥
    • Organizer
      JST新技術説明会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-Atlas の使い方とその応用2019

    • Author(s)
      沖 真弥
    • Organizer
      資生堂 セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-Altasにおけるサンプルメタデータのキュレーションと、その爆速化2019

    • Author(s)
      沖 真弥
    • Organizer
      Annotathon 2019
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] Annotathon 20192019

    • Author(s)
      沖 真弥
    • Organizer
      Annotathon 2019
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] 公共ChIP-seqデータの利活用術2019

    • Author(s)
      沖 真弥
    • Organizer
      国立精神・神経医療研究センター セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 特定領域の発現情報を光照射で取り出す技術2019

    • Author(s)
      沖 真弥
    • Organizer
      JST新技術説明会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H03424
  • [Presentation] ChIP-Atlasをつないで使う2019

    • Author(s)
      沖 真弥
    • Organizer
      トーゴーの日シンポジウム2019
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-Atlas: 既報ChIP-seqデータの統合データベース2019

    • Author(s)
      沖 真弥
    • Organizer
      日本プロテオーム学会2019年大会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 公共ChIP-seqデータの利活用術2019

    • Author(s)
      沖 真弥
    • Organizer
      産総研 セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 公共ChIP-seqデータと疾患関連SNPの統合解析2018

    • Author(s)
      沖 真弥
    • Organizer
      第41回日本分子生物学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 公共ChIP-seqデータをフル活用し、遺伝性疾患の解明に挑む2018

    • Author(s)
      沖 真弥
    • Organizer
      第16回JCGGシンポジウム
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 医工学研究ビッグデータのデーターベース構築と活用2018

    • Author(s)
      沖 真弥
    • Organizer
      東京大学 工学系研究科 医工学概論
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data2018

    • Author(s)
      Shinya Oki
    • Organizer
      Research collaborating meeting on "Molecular mechanism of tooth development and regeneration"
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-Atlas: 既報のChIP-seqデータをフル活用できる2018

    • Author(s)
      沖 真弥
    • Organizer
      統合データベース講習会:AJACS町田
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] ChIP-seqとプロテオーム:公共データをつないで使う2018

    • Author(s)
      沖 真弥、石濱泰
    • Organizer
      トーゴーの日シンポジウム2018
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] 公共ChIP-seqデータをフル活用し、遺伝性疾患の解明に挑む2018

    • Author(s)
      沖 真弥
    • Organizer
      JSBi 九州部会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] Integrative analysis of transcription factor occupancy at enhancers and disease risk loci in noncoding genomic regions2018

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Hideki Hatanaka, Osamu Ogasawara, Yoshihiro Okuda, Hideya Kawaji, Ryo Nakaki, Jun Sese, Chikara Meno
    • Organizer
      Keystone Symposium; Gene Control in Development and Disease
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26291051
  • [Presentation] Integrative analysis of transcription factor occupancy at enhancers and disease risk loci in noncoding genomic regions2018

    • Author(s)
      Oki S, Ohta T, Shioi G, Hatanaka H, Ogasawara O, Okuda Y, Kawaji H, Nakaki R, Sese J, Meno C
    • Organizer
      Keystone Symposium; Gene Control in Development and Disease
    • Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-16H06530
  • [Presentation] 公共 ChIP-seq データをフル活用し、遺伝性疾患の解明に挑む2018

    • Author(s)
      沖 真弥
    • Organizer
      九州工業大学 セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-18KT0024
  • [Presentation] Integrative analysis of transcription factor occupancy at enhancers and disease risk loci in noncoding genomic regions2017

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Hideki Hatanaka, Osamu Ogasawara, Yoshihiro Okuda, Hideya Kawaji, Ryo Nakaki, Jun Sese, Chikara Meno
    • Organizer
      50th Annual Meeting of the Japanese Society of Developmental Biologists
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26291051
  • [Presentation] エピゲノミクス統合データベースの開発と機能拡充2017

    • Author(s)
      沖 真弥
    • Organizer
      トーゴーの日シンポジウム2017
    • Invited
    • Data Source
      KAKENHI-PLANNED-16H06530
  • [Presentation] Trans-generational transmission of ASD-like phenotypes possibly via sperm epigenetic alteration caused by paternal age2017

    • Author(s)
      Kimura R, Yoshizaki K, Koike T, Oki S, Aoki N, Mochizuki K, Kobayashi H, Kikkawa T, Inada H, Matsui Y, Kono T, Osumi N
    • Organizer
      国際自閉症カンファレンス東京2017
    • Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-16H06530
  • [Presentation] 生命科学のデータベース活_法フォーラム :ChIP-Atlas2017

    • Author(s)
      沖 真弥
    • Organizer
      ConBio 2017
    • Data Source
      KAKENHI-PLANNED-16H06530
  • [Presentation] The transcription factor landscape decodes the enhancers and risk variants in non-coding regions2017

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Hideki Hatanaka, Osamu Ogasawara, Yoshihiro Okuda, Hideya Kawaji, Ryo Nakaki, Jun Sese, Chikara Meno
    • Organizer
      Keystone Symposium; Epigenetics and Human Disease: Progress from Mechanisms to Therapeutics
    • Place of Presentation
      Seattle
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26291051
  • [Presentation] 高齢の精子にみられるDNAメチル化異常と子孫の表現型異常との関連2017

    • Author(s)
      木村龍一、吉崎嘉一、小池佐、沖真弥、青木七菜、望月健太郎、小林久人、吉川貴子、稲田仁、松居靖久、河野友宏、大隅典子
    • Organizer
      第40回日本神経科学大会
    • Data Source
      KAKENHI-PLANNED-16H06530
  • [Presentation] Paternal age affects offspring’s behavior possibly via sperm epigenetic alteration established by a transcriptional repressor REST2017

    • Author(s)
      Kimura R, Yoshizaki K, Koike T, Oki S, Aoki N, Mochizuki K, Kobayashi H, Kikkawa T, Inada H, Matsui Y, Kono T, Osumi N
    • Organizer
      The International Research Symposium on Regulation of Germ Cell Development in vivo and in vitro in vitro
    • Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-16H06530
  • [Presentation] Trans-generational transmission of ASD-like phenotypes possibly2017

    • Author(s)
      木村龍一、吉崎嘉一、小池佐、沖真弥、青木七奈、望月研太郎、小林久人、吉川貴子、稲田仁、河野友宏、松居靖久、大隅典子
    • Organizer
      次世代脳プロジェクト 冬のシンポジウム
    • Data Source
      KAKENHI-PLANNED-16H06530
  • [Presentation] Trans-generational transmission of ASD-like phenotypes possibly via sperm epigenetic alteration caused by paternal age2017

    • Author(s)
      Kimura R., Yoshizaki K., Koike T., Oki S., Aoki N., Mochizuki K., Kobayashi H., Kikkawa T., Inada H., Matsui Y., Kono T., Osumi N.
    • Organizer
      国際自閉症カンファレンス東京2017
    • Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-16H06530
  • [Presentation] Paternal aging-induced differential DNA methylation in sperm: possible effects on gene expression and behavior in offspring2017

    • Author(s)
      Osumi N, Kimura R, Yoshizaki K, Koike T, Oki S, Mochizuki K, Kikkawa T, Inada H, Matsui Y, Kono T
    • Organizer
      Neuroscience 2017(USA)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-16H06530
  • [Presentation] 既報の ChIP-seq データの利活用術2017

    • Author(s)
      沖 真弥, 大田 達郎, 塩井 剛, 畠中 秀樹, 小笠原 理, 奥田 喜広, 川路 英哉, 仲木 竜, 瀬々 潤, 目野 主税
    • Organizer
      第4回 発生における代謝を考える会
    • Place of Presentation
      京都大学
    • Invited
    • Data Source
      KAKENHI-PROJECT-26291051
  • [Presentation] 父加齢が次世代の行動に影響を与えるエピジェネティックなメカニズム: 新たな自閉スペクトラム症モデルの提案2017

    • Author(s)
      吉崎 嘉一、小池 佐、木村 龍一、吉川 貴子、沖 真弥、稲田 仁、松居 靖之、河野 友宏、大隅 典子
    • Organizer
      第122回日本解剖学会総会・全国学術集会
    • Invited
    • Data Source
      KAKENHI-PLANNED-16H06530
  • [Presentation] ChIP-Atlas: Comprehensive and integrative database for visualizing and mining all published ChIP-seq data.2016

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Ryo Nakaki, Osamu Ogasawara, Yoshihiro Okuda, Hideki Hatanaka, Chikara Meno
    • Organizer
      SYSTEMS BIOLOGY: GLOBAL REGULATION OF GENE EXPRESSION
    • Place of Presentation
      Cold spring harbor laboratory, USA
    • Year and Date
      2016-03-17
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26291051
  • [Presentation] 網羅的かつ統合的な ChIP-seq データの解析2016

    • Author(s)
      沖 真弥, 大田 達郎, 塩井 剛, 畠中 秀樹, 小笠原 理, 奥田 喜広, 川路 英哉, 仲木 竜, 瀬々 潤, 目野 主税
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-26291051
  • [Presentation] 妊娠前糖尿病における左右軸形成異常2016

    • Author(s)
      蜂須賀 正紘、北島 桂子 、沖 真弥、生田 智美、目野 主税
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Invited
    • Data Source
      KAKENHI-PROJECT-26291051
  • [Presentation] ChIP-Atlas: Comprehensive and integrative database for visualizing and mining all published ChIP-seq data2016

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Ryo Nakaki, Osamu Ogasawara, Yoshihiro Okuda, Hideki Hatanaka, Chikara Meno
    • Organizer
      SYSTEMS BIOLOGY: GLOBAL REGULATION OF GENE EXPRESSION
    • Place of Presentation
      Cold spring harbor laboratory
    • Year and Date
      2016-03-17
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25840087
  • [Presentation] 既報のChIP-seqデータをフル活用するための統合データベース2015

    • Author(s)
      沖 真弥, 大田 達郎, 塩井 剛, 仲木 竜, 目野 主税
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      横浜市
    • Year and Date
      2015-12-01
    • Data Source
      KAKENHI-PROJECT-25840087
  • [Presentation] ChIP-seq データベースのためのメタ情報アノテーション2015

    • Author(s)
      沖 真弥
    • Organizer
      Annotathon 2015
    • Place of Presentation
      三島市
    • Year and Date
      2015-11-12
    • Data Source
      KAKENHI-PROJECT-25840087
  • [Presentation] ChIP-Atlas: Comprehensive database for visualizing all published ChIP-seq data2015

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Chikara Meno
    • Organizer
      48th Annual Meeting of JSDB
    • Place of Presentation
      つくば市
    • Year and Date
      2015-06-02
    • Data Source
      KAKENHI-PROJECT-26291051
  • [Presentation] ChIP-seq SRA を利活用するための統合データベース2015

    • Author(s)
      沖 真弥, 大田 達郎, 塩井 剛, 目野 主税
    • Organizer
      NGS現場の会第四回研究会
    • Place of Presentation
      つくば市
    • Year and Date
      2015-07-01
    • Data Source
      KAKENHI-PROJECT-26291051
  • [Presentation] 既報のChIP-seqデータをフル活用するための統合データベース2015

    • Author(s)
      沖 真弥, 大田 達郎, 塩井 剛, 仲木 竜, 目野 主税
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      横浜市
    • Year and Date
      2015-12-01
    • Data Source
      KAKENHI-PROJECT-26291051
  • [Presentation] ChIP-Atlas: Comprehensive database for visualizing all published ChIP-seq data2015

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Chikara Meno
    • Organizer
      48th Annual Meeting of JSDB
    • Place of Presentation
      つくば市
    • Year and Date
      2015-06-02
    • Data Source
      KAKENHI-PROJECT-25840087
  • [Presentation] 既報のChIP-seqデータをフル活用するための統合データベース2015

    • Author(s)
      沖 真弥
    • Organizer
      生命情報科学若手の会 第7回研究会
    • Place of Presentation
      鶴岡市
    • Year and Date
      2015-10-01
    • Data Source
      KAKENHI-PROJECT-25840087
  • [Presentation] ChIP-seq SRA を利活用するための統合データベース2015

    • Author(s)
      沖 真弥, 大田 達郎, 塩井 剛, 目野 主税
    • Organizer
      NGS現場の会第四回研究会
    • Place of Presentation
      つくば市
    • Year and Date
      2015-07-01
    • Data Source
      KAKENHI-PROJECT-25840087
  • [Presentation] SraTailor: GUI software for visualizing high-throughput sequence read archives2014

    • Author(s)
      Shinya Oki, Kazumitsu Maehara, Yasuyuki Ohkawa, Chikara Meno
    • Organizer
      47th Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      名古屋市 ウインクあいち
    • Year and Date
      2014-05-28
    • Data Source
      KAKENHI-PROJECT-25840087
  • [Presentation] SraTailor: 誰でも使えるChIP-seqデータの可視化ツール2014

    • Author(s)
      沖 真弥, 前原 一満, 大川 恭行, 目野 主税
    • Organizer
      第37回日本分子生物学会
    • Place of Presentation
      横浜市 パシフィコ横浜
    • Year and Date
      2014-11-25
    • Data Source
      KAKENHI-PROJECT-25840087
  • [Presentation] SraTailor: GUI software for visualizing high-throughput sequence read archives2014

    • Author(s)
      Shinya Oki, Kazumitsu Maehara, Yasuyuki Ohkawa, Chikara Meno
    • Organizer
      47th Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      名古屋市
    • Year and Date
      2014-05-28
    • Data Source
      KAKENHI-PROJECT-26291051
  • [Presentation] Development of a GUI software to visualize high through-put sequence read archives2013

    • Author(s)
      Shinya Oki, Kazumitsu Maehara, Yasuyuki Ohkawa, Chikara Meno
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場
    • Data Source
      KAKENHI-PLANNED-21116002
  • [Presentation] 既報の次世代シーケンサ解析データを可視化するための簡易ソフトウェア2013

    • Author(s)
      沖 真弥
    • Organizer
      定量生物学の会 第六回年会
    • Place of Presentation
      大阪大学吹田キャンパス 銀杏会館
    • Data Source
      KAKENHI-PLANNED-21116002
  • [Presentation] Development of a Mac GUI Application to Visualize Published Raw ChIP-seq data2013

    • Author(s)
      Shinya Oki and Chikara Meno
    • Organizer
      The 61st NIBB Conference "Cellular Community in Mammalian Embryogenesis"
    • Place of Presentation
      岡崎コンファレンスセンター
    • Data Source
      KAKENHI-PROJECT-23770254
  • [Presentation] Wnt signaling regulates the left-right axis formation in the node of mouse embryos2013

    • Author(s)
      Kitajima, Oki, Sumi, Meno
    • Organizer
      第46回発生生物学会
    • Place of Presentation
      松江
    • Data Source
      KAKENHI-PLANNED-21116002
  • [Presentation] Development of a GUI software to visualize high through-put sequence read archives2013

    • Author(s)
      Shinya Oki, Kazumitsu Maehara, Yasuyuki Ohkawa, Chikara Meno
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場
    • Data Source
      KAKENHI-PROJECT-23770254
  • [Presentation] Development of a GUI software to visualize high through-put sequence read archives2013

    • Author(s)
      Shinya Oki, Kazumitsu Maehara, Yasuyuki Ohkawa, Chikara Meno
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場
    • Data Source
      KAKENHI-PROJECT-25840087
  • [Presentation] Development of a Mac GUI Application to Visualize Published Raw ChIP-seq data2013

    • Author(s)
      Shinya Oki and Chikara Meno
    • Organizer
      The 61st NIBB Conference "Cellular Community in Mammalian Embryogenesis"
    • Place of Presentation
      岡崎コンファレンスセンター
    • Data Source
      KAKENHI-PROJECT-25840087
  • [Presentation] Wnt signaling regulates the left-right axis formation in the node2013

    • Author(s)
      Kitajima, Oki, Sumi, Meno
    • Organizer
      Mouse Molecular Genetics
    • Place of Presentation
      Cambridge, UK
    • Data Source
      KAKENHI-PLANNED-21116002
  • [Presentation] 既報の次世代シーケンサ解析データを可視化するための簡易ソフトウェア2013

    • Author(s)
      沖 真弥
    • Organizer
      定量生物学の会 第六回年会
    • Place of Presentation
      大阪大学吹田キャンパス 銀杏会館
    • Data Source
      KAKENHI-PROJECT-25840087
  • [Presentation] Wnt signaling regulates the left-right axis formation in the node of mouse embyors2013

    • Author(s)
      Keiko Kitajima, Shinya Oki, Tomoyuki Sumi, Chikara Meno
    • Organizer
      第46回発生生物学会
    • Place of Presentation
      松江
    • Data Source
      KAKENHI-PLANNED-21116002
  • [Presentation] 既報の次世代シーケンサ解析データを可視化するための簡易ソフトウェア2013

    • Author(s)
      沖真弥
    • Organizer
      定量生物学の会第六回年会
    • Place of Presentation
      大阪大学吹田キャンパス銀杏会館
    • Data Source
      KAKENHI-PROJECT-23770254
  • [Presentation] 既報の次世代シーケンサ解析データを可視化するための簡易ソフトウェア2013

    • Author(s)
      沖 真弥
    • Organizer
      定量生物学の会 第六回年会
    • Place of Presentation
      大阪大学吹田キャンパス 銀杏会館
    • Data Source
      KAKENHI-PROJECT-23770254
  • [Presentation] マウス初期発生におけるFgfシグナルの役割-化学的阻害剤を用いた高時間分解能解析-2010

    • Author(s)
      沖真弥 ,目野主税
    • Organizer
      第43回日本発生生物学会年会
    • Place of Presentation
      京都市
    • Year and Date
      2010-06-21
    • Data Source
      KAKENHI-PLANNED-21116002
  • [Presentation] マウス初期発生におけるFgfシグナルの役割2010

    • Author(s)
      沖真弥, ら
    • Organizer
      第43回日本発生生物学会年会
    • Place of Presentation
      京都国際会館
    • Year and Date
      2010-06-21
    • Data Source
      KAKENHI-PROJECT-21657059
  • [Presentation] Reversal of left-right asymmetry induced by aberrant Nodal signaling in the node of mouse embryos2009

    • Author(s)
      Oki et al.
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Data Source
      KAKENHI-PLANNED-21116002
  • [Presentation] Reversal of left-right asymmetry induced by aberrant Nodal signaling in the node of mouse embryos.2009

    • Author(s)
      Oki, et al.
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Data Source
      KAKENHI-PLANNED-21116002
  • [Presentation] Reversal of left-right asymmetry induced by aberrant Nodal signaling in the node of mouse embryos2009

    • Author(s)
      Oki, et al
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-10
    • Data Source
      KAKENHI-PROJECT-21657059
  • [Presentation] 誰でも使えるChIP-seqデータの可視化ツール

    • Author(s)
      沖 真弥
    • Organizer
      定量生物学の会 第7回年会
    • Place of Presentation
      春日市 九州大学筑紫キャンパス
    • Year and Date
      2015-01-11 – 2015-01-12
    • Data Source
      KAKENHI-PROJECT-25840087
  • [Presentation] 高血糖症はマウス胚の左右軸形成を阻害することで心臓形態形成を撹乱する

    • Author(s)
      蜂須賀 正紘、沖 真弥、北島 桂子、角 智行、目野 主税
    • Organizer
      第37回日本分子生物学会
    • Place of Presentation
      横浜市
    • Year and Date
      2014-11-25 – 2014-11-27
    • Data Source
      KAKENHI-PROJECT-26291051
  • [Presentation] SraTailor: 誰でも使えるChIP-seqデータの可視化ツール

    • Author(s)
      沖 真弥, 前原 一満, 大川 恭行, 目野 主税
    • Organizer
      第37回日本分子生物学会
    • Place of Presentation
      横浜市
    • Year and Date
      2014-11-25 – 2014-11-27
    • Data Source
      KAKENHI-PROJECT-26291051
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    # of Collaborated Products: 30 results
  • 2.  KITAJIMA Keiko (00332784)
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