Honda Shinji 本田信治

… Alternative Names

HONDA Shinji 本田信治

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Researcher Number	90632167
Other IDs	https://orcid.org/0000-0002-1584-4156
Affiliation (Current)	2025: 福井大学, 学術研究院医学系部門, 准教授
Affiliation (based on the past Project Information) *help	2023: 福井大学, 学術研究院医学系部門, 准教授 2016 – 2022: 福井大学, 学術研究院医学系部門, 助教 2012 – 2015: 福井大学, テニュアトラック推進本部, 助教 2013: 福井大学, 学内共同利用施設等, 助教
Review Section/Research Field	Principal Investigator Applied molecular and cellular biology / Biological Sciences / Transformative Research Areas, Section (III) / Medium-sized Section 38:Agricultural chemistry and related fields / Basic Section 38060:Applied molecular and cellular biology-related / Complex systems / System genome science / Genetics/Genome dynamics Except Principal Investigator Medium-sized Section 38:Agricultural chemistry and related fields
Keywords	Principal Investigator アカパンカビ / ウイルス / エピジェネティクス / 菌類 / 応用微生物学 / ゲノム防御 / 子嚢胞子 / DNAメチル化 / ライブイメージング / 染色体動態 … More / ゲノム編集 / 熱 / 応用微生物 / 熱耐性 / 休眠 / エピジェネティク / ヒストン修飾 / ストレス / ヘテロクロマチン … More Except Principal Investigator アカパン株 / RNA編集 / 転写制御 / RNAi / 抗ウイルス機構 / ウイルス-宿主相互作用 / モデル糸状菌 / アカパンカビ / ウイルス Less

子嚢菌門の糸状菌に保存された生殖期特異的ウイルス除去機構を担う因子群の同定Principal Investigator
- Principal Investigator
  
  本田信治
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 38:Agricultural chemistry and related fields
- Research Institution
  University of Fukui
非ドメイン型バイオポリマーを介した菌類ウイルス・宿主間の特殊な共生関係Principal Investigator
- Principal Investigator
  
  本田信治
- Project Period (FY)
  2022 – 2023
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  University of Fukui
宿主アカパンカビの抗ウイルス免疫暴走化機序の解明Principal Investigator
- Principal Investigator
  
  本田信治
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 38060:Applied molecular and cellular biology-related
- Research Institution
  University of Fukui
Frontiers in virus research using a model fungus Neurospora crassa
- Principal Investigator
  
  Kondo Hideki
- Project Period (FY)
  2021 – 2022
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 38:Agricultural chemistry and related fields
- Research Institution
  Okayama University
モデル生物アカパンカビを利用したウイルス・宿主の相利共生と環境適応の関係解明Principal Investigator
- Principal Investigator
  
  本田信治
- Project Period (FY)
  2019 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  University of Fukui
山火事の熱と煙で目覚めるアカパンカビ子嚢胞子のシグナル伝達経路網Principal Investigator
- Principal Investigator
  
  本田信治
- Project Period (FY)
  2017 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  University of Fukui
Visualization of the RIP machinery in living NeurosporaPrincipal Investigator
- Principal Investigator
  
  Honda Shinji
- Project Period (FY)
  2015 – 2016
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Applied molecular and cellular biology
- Research Institution
  University of Fukui
Heat break of ascospore dormancy by fire forest in Neurospora crassaPrincipal Investigator
- Principal Investigator
  
  Honda Shinji
- Project Period (FY)
  2014 – 2018
- Research Category
  
  Grant-in-Aid for Young Scientists (A)
- Research Field
  
  Applied molecular and cellular biology
- Research Institution
  University of Fukui
アカパンカビの特殊能力を利用した染色体適応機構の研究Principal Investigator
- Principal Investigator
  
  本田信治
- Project Period (FY)
  2013 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  University of Fukui
High-throughput screening for protein complexes recognizing codes of epigenetic modificationsPrincipal Investigator
- Principal Investigator
  
  HONDA Shinji
- Project Period (FY)
  2013 – 2014
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  System genome science
- Research Institution
  University of Fukui
ヘテロクロマチンの境界を制御する新規蛋白質の解析Principal Investigator
- Principal Investigator
  
  本田信治
- Project Period (FY)
  2012 – 2013
- Research Category
  
  Grant-in-Aid for Research Activity Start-up
- Research Field
  
  Genetics/Genome dynamics
- Research Institution
  University of Fukui

All 2024 2023 2022 2020 2019 2018 2016 2015 2014 2013 Other

All Journal Article Presentation

[Journal Article] RNA Editing of Genomic Neighbors Controls Antiviral Response in Fungi2023
- Author(s)
  Honda Shinji、Yokoyama Ayumi、Suzuki Nobuhiro
- Journal Title
  
  Sneak Peek
  
  Volume: -
- DOI
  10.2139/ssrn.4425943
- Open Access
- Data Source
  KAKENHI-PROJECT-21H02153, KAKENHI-PROJECT-22K19144, KAKENHI-PUBLICLY-22H05593
[Journal Article] LSD1 prevents aberrant heterochromatin formation in Neurospora crassa2020
- Author(s)
  Storck William K、Bicocca Vincent T、Rountree Michael R、Honda Shinji、Ormsby Tereza、Selker Eric U
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 48 Issue: 18 Pages: 10199-10210
- DOI
  10.1093/nar/gkaa724
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-19H04828
[Journal Article] Establishment of Neurospora crassa as a model organism for fungal virology.2020
- Author(s)
  Honda S, Eusebio-Cope A, Miyashita S, Yokoyama A, Aulia A, Shahi S, Kondo H, Suzuki N
- Journal Title
  
  Nature communications
  
  Volume: 11 Issue: 1 Pages: 5627-5627
- DOI
  10.1038/s41467-020-19355-y
- NAID
  120006939592
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-INTERNATIONAL-16K21723, KAKENHI-PUBLICLY-19H04828, KAKENHI-PROJECT-16H06185, KAKENHI-ORGANIZER-16H06429, KAKENHI-PLANNED-16H06436, KAKENHI-PROJECT-17H01463
[Journal Article] Normal Patterns of Histone H3K27 Methylation Require the Histone Variant H2A.Z in Neurospora crassa2020
- Author(s)
  Courtney Abigail J.、Kamei Masayuki、Ferraro Aileen R.、Gai Kexin、He Qun、Honda Shinji、Lewis Zachary A.
- Journal Title
  
  Genetics
  
  Volume: 216 Issue: 1 Pages: 51-66
- DOI
  10.1534/genetics.120.303442
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-19H04828
[Journal Article] Telomere repeats induce domains of H3K27 methylation in Neurospora2018
- Author(s)
  Jamieson Kirsty、McNaught Kevin J、Ormsby Tereza、Leggett Neena A、Honda Shinji、Selker Eric U
- Journal Title
  
  eLife
  
  Volume: 7
- DOI
  10.7554/elife.31216
- NAID
  120006488715
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26712029, KAKENHI-PUBLICLY-17H05998
[Journal Article] ASH1-catalyzed H3K36 methylation drives gene repression and marks H3K27me2/3-competent chromatin2018
- Author(s)
  Bicocca Vincent T、Ormsby Tereza、Adhvaryu Keyur K、Honda Shinji、Selker Eric U
- Journal Title
  
  eLife
  
  Volume: 7
- DOI
  10.7554/elife.41497
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-17H05998, KAKENHI-PROJECT-26712029
[Journal Article] Nucleosome Positioning by an Evolutionarily Conserved Chromatin Remodeler Prevents Aberrant DNA Methylation in Neurospora2018
- Author(s)
  Klocko Andrew D.、Uesaka Miki、Ormsby Tereza、Rountree Michael R.、Wiles Elizabeth T.、Adhvaryu Keyur K.、Honda Shinji、Selker Eric U.
- Journal Title
  
  Genetics
  
  Volume: 211 Issue: 2 Pages: 563-578
- DOI
  10.1534/genetics.118.301711
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-17H05998, KAKENHI-PROJECT-26712029
[Journal Article] Normal chromosome conformation depends on subtelomeric facultative heterochromatin Neurospora crassa2016
- Author(s)
  Klocko AD, Ormsby T, Galazka JM, Leggett N, Uesaka M, Honda S, Freitag M, and Selker EU
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 113 Issue: 52 Pages: 15048-15053
- DOI
  10.1073/pnas.1615546113
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26712029, KAKENHI-PROJECT-15K14916
[Journal Article] Dual chromatin recognition by the histone deacetylase complex HCHC is required for proper DNA methylation in Neurospora crassa2016
- Author(s)
  Honda S, Bicocca VT, Gessaman JD, Rountree MR, Yokoyama A, Yu EY, Selker JM, and Selker EU
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 113 Issue: 41
- DOI
  10.1073/pnas.1614279113
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26712029, KAKENHI-PROJECT-15K14916
[Journal Article] Neurospora chromosomes are organized by blocks of importin alpha-dependent heterochromatin that are largely independent of H3K9me32016
- Author(s)
  Galazka JM, Klocko AD, Uesaka M, Honda S, Selker EU, Freitag M
- Journal Title
  
  Genome Research
  
  Volume: 26 Issue: 8 Pages: 1069-1080
- DOI
  10.1101/gr.203182.115
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26712029, KAKENHI-PROJECT-15K14916
[Journal Article] The Cullin-4 complex DCDC does not require key E3 ubiquitin ligase elements2015
- Author(s)
  Adhvaryu KK, Gessaman JD, Honda S, Lewis ZA, Grisafi PL, and Selker EU
- Journal Title
  
  Eukaryotic Cell
  
  Volume: 14 Issue: 1 Pages: 25-28
- DOI
  10.1128/ec.00212-14
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-25125710, KAKENHI-PROJECT-25640111, KAKENHI-PROJECT-26712029
[Presentation] RNA Editing of Genomic Neighbors Controls Antiviral Response in Neurospora crassa2024
- Author(s)
  Shinji Honda, Ayumi Yokoyama, and Nobuhiro Suzuki
- Organizer
  32nd Fungal Genetics Conference
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-22H05593
[Presentation] RNA Editing of Genomic Neighbors Controls Antiviral Response in Neurospora crassa2024
- Author(s)
  Shinji Honda, Ayumi Yokoyama, and Nobuhiro Suzuki
- Organizer
  32nd Fungal Genetics Conference
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K19144
[Presentation] モデル生物アカパンカビを用いた植物病原糸状菌とウイルスの相互作用の包括的解析2024
- Author(s)
  本田　信治
- Organizer
  令和5年度岡山大学資源植物科学研究所拠点共同研究成果発表会
- Data Source
  KAKENHI-PROJECT-22K19144
[Presentation] 非ドメイン型バイオポリマーを介した菌類ウイルス・宿主間の特殊な共生関係2023
- Author(s)
  本田　信治
- Organizer
  学術変革領域研究(A) 非ドメイン型バイオポリマーの生物学・第3回領域会議
- Data Source
  KAKENHI-PROJECT-22K19144
[Presentation] モデル生物アカパンカビを用いた植物病原糸状菌とウイルスの相互作用の包括的解析2023
- Author(s)
  本田　信治
- Organizer
  令和４年度岡山大学資源植物科学研究所拠点共同研究成果発表会
- Data Source
  KAKENHI-PROJECT-22K19144
[Presentation] モデル生物アカパンカビを用いた植物病原糸状菌とウイルスの相互作用の包括的解析2023
- Author(s)
  本田信治
- Organizer
  令和４年度岡山大学資源植物科学研究所拠点共同研究成果発表会
- Data Source
  KAKENHI-PUBLICLY-22H05593
[Presentation] モデル生物アカパンカビを用いた植物病原糸状菌とウイルスの相互作用の包括的解析2023
- Author(s)
  本田信治
- Organizer
  令和４年度岡山大学資源植物科学研究所拠点共同研究成果発表会
- Data Source
  KAKENHI-PROJECT-21H02153
[Presentation] モデル生物アカパンカビを利用した植物病原糸状菌・ウイルス相互作用研究のフロンティア2022
- Author(s)
  本田信治
- Organizer
  令和3年度岡山大学資源植物科学研究所拠点共同研究成果発表会
- Data Source
  KAKENHI-PROJECT-21H02153
[Presentation] 非ドメイン型バイオポリマーを介した菌類ウイルス・宿主間の特殊な共生関係2022
- Author(s)
  本田信治
- Organizer
  学術変革領域研究(A) 非ドメイン型バイオポリマーの生物学・第2回領域会議
- Data Source
  KAKENHI-PUBLICLY-22H05593
[Presentation] 非ドメイン型バイオポリマーを介した菌類ウイルス・宿主間の特殊な共生関係2022
- Author(s)
  本田信治
- Organizer
  学術変革領域研究(A) 非ドメイン型バイオポリマーの生物学・第2回領域会議
- Data Source
  KAKENHI-PROJECT-21H02153
[Presentation] 非ドメイン型バイオポリマーを介した菌類ウイルス・宿主間の特殊な共生関係2022
- Author(s)
  本田　信治
- Organizer
  学術変革領域研究(A) 非ドメイン型バイオポリマーの生物学・第2回領域会議
- Data Source
  KAKENHI-PROJECT-22K19144
[Presentation] モデル生物アカパンカビを利用したウイルス・宿主の相利共生とそのエピジェネティクス制御2019
- Author(s)
  本田信治
- Organizer
  第6回北陸エピジェネティクス研究会
- Data Source
  KAKENHI-PUBLICLY-19H04828
[Presentation] Ascospore sleepless-1 and -2 are required for ascospore dormancy in Neurospora crassa2018
- Author(s)
  Uesaka M, Yokoyama A and Honda S
- Organizer
  Neurospore meeting 2018
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26712029
[Presentation] Ascospore sleepless-1 and -2 are required for ascospore dormancy in Neurospora crassa2018
- Author(s)
  Uesaka M, Yokoyama A and Honda S
- Organizer
  Neurospore meeting
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-17H05998
[Presentation] Shelterin is required for telomeric integrity in Neurospora crassa2016
- Author(s)
  Uesaka M, Yokoyama A, Lewis ZA and Honda S
- Organizer
  EMBO conference
- Place of Presentation
  Liege, Belgium
- Year and Date
  2016-04-26
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K14916
[Presentation] Shelterin is required for telomeric integrity in Neurospora crassa2016
- Author(s)
  Uesaka M, Yokoyama A, Lewis ZA and Honda S
- Organizer
  Neurospora meeting 2016
- Place of Presentation
  California, USA
- Year and Date
  2016-03-10
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26712029
[Presentation] Shelterin is required for telomeric integrity in Neurospora crassa2016
- Author(s)
  Uesaka M, Yokoyama A, Lewis ZA and Honda S
- Organizer
  EMBO conference
- Place of Presentation
  Liege, Belgium
- Year and Date
  2016-04-26
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26712029
[Presentation] Shelterin is required for telomeric integrity in Neurospora crassa2016
- Author(s)
  Uesaka M, Yokoyama A, Lewis ZA and Honda S
- Organizer
  Neurospora meeting 2016
- Place of Presentation
  California, USA
- Year and Date
  2016-03-10
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K14916
[Presentation] Heat break of ascospore dormancy in Neurospora crassa2014
- Author(s)
  Miki Uesaka and Shinji Honda
- Organizer
  Neurospore meeting 2014 at Asilomar
- Place of Presentation
  California, USA
- Data Source
  KAKENHI-PUBLICLY-25125710
[Presentation] アカパンカビの重複配列に対するエピジェネティクス制御2013
- Author(s)
  本田信治
- Organizer
  日本エピジェネティクス研究会
- Place of Presentation
  奈良
- Invited
- Data Source
  KAKENHI-PROJECT-24870012
[Presentation] アカパンカビの重複配列に対するエピジェネティクス制御2013
- Author(s)
  本田信治
- Organizer
  第７回日本エピジェネティクス研究会年会
- Place of Presentation
  奈良県（奈良県新公会堂）
- Invited
- Data Source
  KAKENHI-PROJECT-25640111
[Presentation] Four color imagining by fluorescent protein tagging system in Neurospora crassa
- Author(s)
  Yokoyama A, Uesaka M and Honda S
- Organizer
  The 28th Fungal Genetics Conference at Asilomar
- Place of Presentation
  Monterey, USA
- Year and Date
  2015-03-17 – 2015-03-22
- Data Source
  KAKENHI-PUBLICLY-25125710
[Presentation] Four color imagining by fluorescent protein tagging system in Neurospora crassa
- Author(s)
  Yokoyama A, Uesaka M and Honda S
- Organizer
  The 28th Fungal Genetics Conference at Asilomar
- Place of Presentation
  Monterey, USA
- Year and Date
  2015-03-17 – 2015-03-22
- Data Source
  KAKENHI-PROJECT-26712029
[Presentation] Identification and characterization of Neurospora Shelterin
- Author(s)
  Uesaka M, Yokoyama A, Lewis ZA and Honda S
- Organizer
  The 9th Cold Spring Harbor meeting on Telomeres & Telomerase
- Place of Presentation
  Cold Spring Harbor, USA
- Year and Date
  2015-04-28 – 2015-05-02
- Data Source
  KAKENHI-PROJECT-25640111
[Presentation] Identification and of Neurospora Shelterin
- Author(s)
  Uesaka M, Yokoyama A and Honda S
- Organizer
  The 28th Fungal Genetics Conference at Asilomar
- Place of Presentation
  Monterey, USA
- Year and Date
  2015-03-17 – 2015-03-22
- Data Source
  KAKENHI-PUBLICLY-25125710
[Presentation] Identification and of Neurospora Shelterin
- Author(s)
  Uesaka M, Yokoyama A and Honda S
- Organizer
  The 28th Fungal Genetics Conference at Asilomar
- Place of Presentation
  Monterey, USA
- Year and Date
  2015-03-17 – 2015-03-22
- Data Source
  KAKENHI-PROJECT-26712029
[Presentation] Identification and of Neurospora Shelterin
- Author(s)
  Uesaka M, Yokoyama A and Honda S
- Organizer
  The 28th Fungal Genetics Conference at Asilomar
- Place of Presentation
  Monterey, USA
- Year and Date
  2015-03-17 – 2015-03-22
- Data Source
  KAKENHI-PROJECT-25640111
[Presentation] Four color imagining by fluorescent protein tagging system in Neurospora crassa
- Author(s)
  Yokoyama A, Uesaka M and Honda S
- Organizer
  The 28th Fungal Genetics Conference at Asilomar
- Place of Presentation
  Monterey, USA
- Year and Date
  2015-03-17 – 2015-03-22
- Data Source
  KAKENHI-PROJECT-25640111
[Presentation] Identification and characterization of Neurospora Shelterin
- Author(s)
  Uesaka M, Yokoyama A, Lewis ZA and Honda S
- Organizer
  The 9th Cold Spring Harbor meeting on Telomeres & Telomerase
- Place of Presentation
  Cold Spring Harbor, USA
- Year and Date
  2015-04-28 – 2015-05-02
- Data Source
  KAKENHI-PUBLICLY-25125710

1. 鈴木信弘 (70206514)

# of Collaborated Projects: 2 results

# of Collaborated Products: 2 results
2. Kondo Hideki (40263628)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Honda Shinji 本田 信治

HONDA Shinji 本田 信治

Research Projects

Research Products

Co-Researchers

子嚢菌門の糸状菌に保存された生殖期特異的ウイルス除去機構を担う因子群の同定Principal Investigator

Principal Investigator

Project Period (FY)

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Research Institution

非ドメイン型バイオポリマーを介した菌類ウイルス・宿主間の特殊な共生関係Principal Investigator

Principal Investigator

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Research Institution

宿主アカパンカビの抗ウイルス免疫暴走化機序の解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Frontiers in virus research using a model fungus Neurospora crassa

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

モデル生物アカパンカビを利用したウイルス・宿主の相利共生と環境適応の関係解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

山火事の熱と煙で目覚めるアカパンカビ子嚢胞子のシグナル伝達経路網Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Visualization of the RIP machinery in living NeurosporaPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Heat break of ascospore dormancy by fire forest in Neurospora crassaPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

アカパンカビの特殊能力を利用した染色体適応機構の研究Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

High-throughput screening for protein complexes recognizing codes of epigenetic modificationsPrincipal Investigator

Principal Investigator

Project Period (FY)

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Research Field

Research Institution

ヘテロクロマチンの境界を制御する新規蛋白質の解析Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

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[Journal Article] RNA Editing of Genomic Neighbors Controls Antiviral Response in Fungi2023

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[Journal Article] LSD1 prevents aberrant heterochromatin formation in Neurospora crassa2020

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Honda Shinji 本田信治

HONDA Shinji 本田信治