Hirase Shotaro 平瀬祥太朗

Researcher Number	90635559
Other IDs
Affiliation (Current)	2025: 東京大学, 大学院農学生命科学研究科(農学部), 准教授
Affiliation (based on the past Project Information) *help	2016 – 2024: 東京大学, 大学院農学生命科学研究科(農学部), 助教 2017: 東京大学, 大学院農学生命科学研究科, 助教 2015: 東京大学, 農学生命科学研究科, 助教 2014: 東京大学, 大気海洋研究所, 研究員
Review Section/Research Field	Principal Investigator Basic Section 39060:Conservation of biological resources-related / Basic Section 45030:Biodiversity and systematics-related / Forestry and Forest Products Science, Applied aquatic science, and related fields / Aquatic life science Except Principal Investigator Basic Section 45030:Biodiversity and systematics-related / Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields / Aquatic bioproduction science
Keywords	Principal Investigator 交雑 / 集団ゲノミクス / 交雑帯 / SNP / 日本列島 / 生殖隔離 / アワビ / 次世代シーケンサー / 絶滅危惧種 / 大型アワビ … More / 貝殻 / 種分化逆転 / 表現型 / Mito-nuclear discordance / de novo genome assembly / シロウオ / アゴハゼ / mito-nuclear discordance / 核ゲノム / 系統地理 / 東シナ海 / 日本海 / ミトコンドリアゲノム / 全ゲノム / 雑種種分化 / ゲノム不和合 / 二次的接触帯 / 近縁種群 / 集団ゲノミクス解析 / 全ゲノム解析 / GRAD-Di / コピー数多型 / 集団遺伝 / 集団動態モデリング / 大型アワビ類 / 保全 / GRAS-Di / ゲノムシーケンス / 種分化 / ミトコンドリアDNA / ボトルネック / RADシーケンス / クラスタリング分析 / 集団構造 / 侵入種 / RAD-seq / 遺伝的撹乱 / 分子系統地理 / マハゼ … More Except Principal Investigator 縄張り行動 / 行動ゲノミクス / 行動内分泌学 / 進化機構 / 生態ゲノミクス / 魚類 / 本能行動 / 行動遺伝 / 行動生態 / 行動遺伝学 / 行動生態学 / 適応進化 / 繁殖戦略 / 魚 / 貝 / 性決定遺伝子 / 性染色体 / 性決定 / 地域適応遺伝子 / ゲノム解析 / 遺伝資源 / 遺伝的多様性 / 水産学 Less

幻の「マダカアワビ」における種分化逆転仮説の検証Principal Investigator
- Principal Investigator
  
  平瀬祥太朗
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 39060:Conservation of biological resources-related
- Research Institution
  The University of Tokyo
急速な進化を逆利用して水産生物の性決定遺伝子をとらえる
- Principal Investigator
  
  菊池潔
- Project Period (FY)
  2022 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields
- Research Institution
  The University of Tokyo
Genomic basis underlying adaptive differentiation in reproductive-related behavior of the stickleback fish
- Principal Investigator
  
  Tomoyuki Kokita
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 45030:Biodiversity and systematics-related
- Research Institution
  Kyushu University
Genome evolution in novel hybrid populationsPrincipal Investigator
- Principal Investigator
  
  Hirase Shotaro
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 45030:Biodiversity and systematics-related
- Research Institution
  The University of Tokyo
Population genomics of western Pacific abalonesPrincipal Investigator
- Principal Investigator
  
  Hirase Shotaro
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Research Field
  
  Forestry and Forest Products Science, Applied aquatic science, and related fields
- Research Institution
  The University of Tokyo
Large-scale genotyping technologies for fish genetic resource management
- Principal Investigator
  
  Kikuchi Kiyoshi
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Aquatic bioproduction science
- Research Institution
  The University of Tokyo
Whether is genetic disturbance caused in coastal mraine species?: Genome-wide population genetics of the yellowfin gobyPrincipal Investigator
- Principal Investigator
  
  Hirase Shotaro
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Aquatic life science
- Research Institution
  The University of Tokyo

All 2024 2023 2021 2020 2019 2018 2017 2016 2015

All Journal Article Presentation

[Journal Article] 1. 集団ゲノミクス:SNP 検出と解析2024
- Author(s)
  平瀬祥太朗
- Journal Title
  
  日本水産学会誌
  
  Volume: 90 Pages: 141-141
- Open Access
- Data Source
  KAKENHI-PROJECT-23K05267
[Journal Article] 6. 日本産大型アワビ類における種分化と適応進化の遺伝基盤2024
- Author(s)
  平瀬祥太朗
- Journal Title
  
  日本水産学会誌
  
  Volume: 90 Pages: 146-146
- Open Access
- Data Source
  KAKENHI-PROJECT-23K05267
[Journal Article] 集団ゲノミクス:SNP 検出と解析2024
- Author(s)
  平瀬祥太朗
- Journal Title
  
  水産育種
  
  Volume: 53 Pages: 25-34
- Data Source
  KAKENHI-PROJECT-23K05267
[Journal Article] 日本産大型アワビ類における種分化と適応進化の遺伝基盤2024
- Author(s)
  平瀬祥太朗
- Journal Title
  
  水産育種
  
  Volume: 53 Pages: 55-62
- Data Source
  KAKENHI-PROJECT-23K05267
[Journal Article] Genomic and phenotypic consequences of two independent secondary contact zones between allopatric lineages of the anadromous ice goby Leucopsarion petersii2020
- Author(s)
  Hirase S, Kokita T, Nagano JA, Kikuchi K
- Journal Title
  
  Heredity
  
  Volume: 124 Issue: 1 Pages: 223-235
- DOI
  10.1038/s41437-019-0239-6
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H02493
[Journal Article] Integrative genomic phylogeography reveals signs of mitonuclear incompatibility in a natural hybrid goby population2020
- Author(s)
  Shotaro Hirase, Ayumi Tezuka, Atsushi J. Nagano, Mana Sato, Sho Hosoya, Kiyoshi Kikuchi, Wataru Iwasaki
- Journal Title
  
  Evolution
  
  Volume: 75 Issue: 1 Pages: 176-194
- DOI
  10.1111/evo.14120
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H02493, KAKENHI-PROJECT-16H06279
[Journal Article] Genetic isolation by distance in the yellowfin goby populations revealed by RAD sequencing2020
- Author(s)
  Hirase S, Tezuka A, Nagano JA, Kikuchi K, Iwasaki W
- Journal Title
  
  Ichthyological Research
  
  Volume: 67 Issue: 1 Pages: 98-104
- DOI
  10.1007/s10228-019-00709-6
- NAID
  40022132569
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H02493, KAKENHI-PROJECT-16H06279
[Journal Article] Complex phylogeographic patterns in the intertidal goby Chaenogobius annularis around Kyushu Island as a boundary zone of three different seas2020
- Author(s)
  Shuya Kato, Seiji Arakaki, Kiyoshi Kikuchi, Shotaro Hirase
- Journal Title
  
  Ichthyological Research
  
  Volume: 68 Issue: 1 Pages: 86-100
- DOI
  10.1007/s10228-020-00772-4
- NAID
  40022462082
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H02493
[Journal Article] Phylogeography of the yellowfin goby Acanthogobius flavimanus in native and non-native distributions2017
- Author(s)
  Hirase S, Chambers S, Hassell K, Carew M, Pettigrove V, Soyano K, Nagae M, Iwasaki W.
- Journal Title
  
  Marine Biology
  
  Volume: -
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26850131
[Journal Article] Mitogenome Sequencing Alleviates Random Rooting Effect in Phylogeography.2016
- Author(s)
  Shotaro Hirase, Hirohiko Takeshima, Mutsumi Nishida, Wataru Iwasaki
- Journal Title
  
  Genome Biology and Evolution
  
  Volume: - Issue: 4 Pages: 1267-1278
- DOI
  10.1093/gbe/evw063
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K07538, KAKENHI-PROJECT-15J06937, KAKENHI-PROJECT-25340063, KAKENHI-PROJECT-26850131, KAKENHI-PROJECT-16H06279
[Journal Article] Stability of genetic diversity in an intertidal goby against tsunami disturbances2016
- Author(s)
  Hirase S, Ikeda M, Hayasaka S, Iwasaki W, Kijima A.
- Journal Title
  
  Marine Ecology
  
  Volume: 37 Issue: 5 Pages: 1161-1167
- DOI
  10.1111/maec.12377
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26850131
[Presentation] 日本産大型アワビ類における種分化と適応進化の遺伝基盤2023
- Author(s)
  平瀬祥太朗
- Organizer
  令和5年度日本水産学会秋季大会：ミニシンポジウム
- Data Source
  KAKENHI-PROJECT-23K05267
[Presentation] 集団パラロガスゲノミクスで迫る日本産アワビ類の種分化と適応進化2023
- Author(s)
  平瀬祥太朗
- Organizer
  日本進化学会第 25 回沖縄大会
- Data Source
  KAKENHI-PROJECT-23K05267
[Presentation] 集団ゲノミクス:SNP 検出と解析2023
- Author(s)
  平瀬祥太朗
- Organizer
  令和5年度日本水産学会秋季大会：ミニシンポジウム
- Data Source
  KAKENHI-PROJECT-23K05267
[Presentation] Mito-nuclear discordanceを示すアゴハゼ東シナ海系統の形成史2021
- Author(s)
  加藤柊也、新垣誠司、永野惇、菊池潔、平瀬祥太朗
- Organizer
  令和3年度日本水産学会春季大会
- Data Source
  KAKENHI-PROJECT-18H02493
[Presentation] シロウオ日本海系統における緯度適応と集団ゲノミクス解析2021
- Author(s)
  平瀬祥太朗、菊池潔、永野惇、小北智之
- Organizer
  令和3年度日本水産学会春季大会（ウェブ大会）
- Data Source
  KAKENHI-PROJECT-18H02493
[Presentation] 日本産大型アワビ類3種の種分化プロセスの推定と遺伝子コピー数多型の検出2020
- Author(s)
  平瀬祥太朗, 山崎曜, 關野正志, 池田実, 原素之, 菊池　潔
- Organizer
  令和2年度日本水産学会春季大会
- Data Source
  KAKENHI-PROJECT-17K19280
[Presentation] シロウオ日本海系統における遺伝子流動下での局所適応2020
- Author(s)
  平瀬祥太朗、菊池潔、永野惇、小北智之
- Organizer
  第53回日本魚類学会年会（ウェブ大会）
- Data Source
  KAKENHI-PROJECT-18H02493
[Presentation] 九州沿岸に着目したドロメとアゴハゼの比較集団ゲノミクス解析2020
- Author(s)
  加藤柊也、新垣誠司、永野惇、菊池潔、平瀬祥太朗
- Organizer
  第53回日本魚類学会年会（ウェブ大会）
- Data Source
  KAKENHI-PROJECT-18H02493
[Presentation] ゲノムワイドSNP解析による日本産大型アワビ類3種の遺伝的類縁関係2019
- Author(s)
  平瀬祥太朗・關野正志・池田実・原素之・菊池　潔
- Organizer
  平成31年度日本水産学会春季大会
- Data Source
  KAKENHI-PROJECT-17K19280
[Presentation] Population genomics of Pacific abalone species complex in early phase of marine speciation2019
- Author(s)
  Shotaro Hirase, Masashi Sekino, Minoru Ikeda, Motoyuki Hara, Kiyoshi Kikuchi
- Organizer
  Evolution2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K19280
[Presentation] アゴハゼ2グループの交雑集団の全ゲノム解析2019
- Author(s)
  平瀬祥太朗
- Organizer
  第66回　日本生態学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-18H02493
[Presentation] シロウオの五島集団の高い遺伝的固有性2019
- Author(s)
  佐藤耕平・小北智之・永野惇・菊池潔・平瀬祥太朗
- Organizer
  平成31年度日本水産学会春季大会
- Data Source
  KAKENHI-PROJECT-18H02493
[Presentation] 九州周辺におけるアゴハゼの分子系統地理2019
- Author(s)
  加藤柊也, 新垣誠司, 菊池　潔, 平瀬祥太朗
- Organizer
  第52回魚類学会年会
- Data Source
  KAKENHI-PROJECT-18H02493
[Presentation] 主成分分析による地域適応遺伝子の探索2018
- Author(s)
  平瀬祥太朗・手塚あゆみ・永野惇・菊池潔・岩崎渉
- Organizer
  平成30年度日本水産学会春季大会
- Data Source
  KAKENHI-PROJECT-16K14966
[Presentation] Mitonuclear incompatibilities promoted mitogenome evolution2018
- Author(s)
  Shotaro Hirase, Ayumi Tezuka, Atsushi J. Nagano, Mana Sato, Sho Hosoya, Kiyoshi Kikuchi, Wataru Iwasaki
- Organizer
  Stickleback2018
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H02493
[Presentation] 主成分分析による地域適応遺伝子の探索2018
- Author(s)
  平瀬祥太朗, 手塚あゆみ, 永野惇, 菊池潔, 岩崎渉
- Organizer
  平成30年日本水産学会春季大会
- Data Source
  KAKENHI-PROJECT-17K19280
[Presentation] Mitonuclear incompatibilities promoted mitogenome evolution in a hybrid population2018
- Author(s)
  Shotaro Hirase, Ayumi Tezuka, Atsushi J. Nagano, Mana Sato, Sho Hosoya, Kiyoshi Kikuchi, Wataru Iwasaki
- Organizer
  Evolution2018
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H02493
[Presentation] “進化の実験場”としての日本列島：魚類の交雑集団のゲノミクス2018
- Author(s)
  平瀬祥太朗
- Organizer
  第51回魚類学会年会　創立50周年記念シンポジウム
- Invited
- Data Source
  KAKENHI-PROJECT-18H02493
[Presentation] Mitonuclear incompatibilities promoted mitogenome evolution in a hybrid population2018
- Author(s)
  Shotaro Hirase, Ayumi Tezuka, Atsushi J. Nagano, Mana Sato, Sho Hosoya, Kiyoshi Kikuchi, Wataru Iwasaki
- Organizer
  The 46th Naito Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H02493
[Presentation] Footprints of selection around the sex determining gene in fugu2017
- Author(s)
  Kabir Ahammad, Risa Ieda, Shotaro Hirase, Takashi Koyama, Satoshi Tasumi, Sho Hosoya, Kiyoshi Kikuchi
- Organizer
  International symposium, Fisheries Science for Future Generations
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K14966
[Presentation] RAD-seqによるシロウオ太平洋型と日本海型の交雑集団の遺伝解析2017
- Author(s)
  平瀬祥太朗，小北智之，永野惇，菊池潔
- Organizer
  平成29年度日本水産学会春季大会
- Place of Presentation
  東京海洋大学品川キャンパス（東京都港区）
- Year and Date
  2017-03-26
- Data Source
  KAKENHI-PROJECT-26850131
[Presentation] RAD-seqによるシロウオ太平洋型と日本海型の交雑集団の遺伝解析2017
- Author(s)
  平瀬祥太朗・小北智之・永野惇・菊池潔
- Organizer
  平成29年度日本水産学会春季大会
- Place of Presentation
  東京海洋大学（東京・品川）
- Year and Date
  2017-03-27
- Data Source
  KAKENHI-PROJECT-16K14966
[Presentation] マハゼの在来地域および侵入地域の分子系統地理2016
- Author(s)
  平瀬祥太朗・Sherrie Chambers・Kathryn Hassell・Melissa Carew・Vincent Pettigrove・征矢野清・長江真樹・岩崎渉
- Organizer
  平成28年度日本水産学会春季大会
- Place of Presentation
  東京海洋大学　品川キャンパス
- Year and Date
  2016-03-26
- Data Source
  KAKENHI-PROJECT-26850131
[Presentation] RAD-Seq analysis of an intertidal goby Chaenogobius annularis uncovered stable hybrid population with novel genomic composition2016
- Author(s)
  Hirase S, Tezuka A, Nagano A, Iwasaki W.
- Organizer
  The 2016 annual meeting of the Society for the Study of Evolution, the Society of Systematic Biologists, and the American Society of Naturalists
- Place of Presentation
  Austin（United States of America）
- Year and Date
  2016-06-17
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26850131
[Presentation] 新たなゲノム構成を有する交雑集団の形成：アコハゼのRAD-seq解析2016
- Author(s)
  平瀬祥太朗，手塚あゆみ，永野惇，岩崎渉
- Organizer
  日本進化学会第18回大会
- Place of Presentation
  東京工業大学大岡山キャンパス（東京都目黒区）
- Year and Date
  2016-08-25
- Data Source
  KAKENHI-PROJECT-26850131
[Presentation] How is a novel genetic group generated through hybridization? A RAD-seq analysis of an intertidal goby Chaenogobius annularis (Agohaze)2016
- Author(s)
  平瀬祥太朗，手塚あゆみ，永野惇，岩崎渉
- Organizer
  第16回東京大学生命科学シンポジウム
- Place of Presentation
  東京大学駒場キャンパス（東京都目黒区）
- Data Source
  KAKENHI-PROJECT-26850131
[Presentation] 日本列島におけるマハゼの分子系統地理および侵入集団の起源の検討2015
- Author(s)
  平瀬祥太朗・岩崎渉
- Organizer
  2015年度日本魚類学会年会
- Place of Presentation
  近畿大学　奈良キャンパス
- Year and Date
  2015-09-04
- Data Source
  KAKENHI-PROJECT-26850131

1. Kikuchi Kiyoshi (20292790)

# of Collaborated Projects: 2 results

# of Collaborated Products: 3 results
2. HOSOYA Sho (60526466)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
3. Tomoyuki Kokita (60372835)

# of Collaborated Projects: 2 results

# of Collaborated Products: 4 results
4. 關野正志 (90371799)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
5. 片町太輔 (60443371)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. 鈴木重則 (60463105)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. 岩崎渉 (50545019)

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
8. 小山喬 (40749701)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 竹内裕 (70418680)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 佐々木猛智 (70313195)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. TAKESHIMA Hirohiko

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Hirase Shotaro 平瀬 祥太朗

Research Projects

Research Products

Co-Researchers

幻の「マダカアワビ」における種分化逆転仮説の検証Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

急速な進化を逆利用して水産生物の性決定遺伝子をとらえる

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Genomic basis underlying adaptive differentiation in reproductive-related behavior of the stickleback fish

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Genome evolution in novel hybrid populationsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Population genomics of western Pacific abalonesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Large-scale genotyping technologies for fish genetic resource management

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Whether is genetic disturbance caused in coastal mraine species?: Genome-wide population genetics of the yellowfin gobyPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] 1. 集団ゲノミクス:SNP 検出と解析2024

Author(s)

Journal Title

Data Source

[Journal Article] 6. 日本産大型アワビ類における種分化と 適応進化の遺伝基盤2024

Author(s)

Journal Title

Data Source

[Journal Article] 集団ゲノミクス:SNP 検出と解析2024

Author(s)

Journal Title

Data Source

[Journal Article] 日本産大型アワビ類における種分化と 適応進化の遺伝基盤2024

Author(s)

Journal Title

Data Source

[Journal Article] Genomic and phenotypic consequences of two independent secondary contact zones between allopatric lineages of the anadromous ice goby Leucopsarion petersii2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Integrative genomic phylogeography reveals signs of mitonuclear incompatibility in a natural hybrid goby population2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Genetic isolation by distance in the yellowfin goby populations revealed by RAD sequencing2020

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] Complex phylogeographic patterns in the intertidal goby Chaenogobius annularis around Kyushu Island as a boundary zone of three different seas2020

Author(s)

Hirase Shotaro 平瀬祥太朗

[Journal Article] 6. 日本産大型アワビ類における種分化と適応進化の遺伝基盤2024

[Journal Article] 日本産大型アワビ類における種分化と適応進化の遺伝基盤2024

[Presentation] 日本産大型アワビ類における種分化と適応進化の遺伝基盤2023