Yamada Daichi 山田大智

Researcher Number	90793191
Other IDs
Affiliation (based on the past Project Information) *help	2019: 兵庫県立大学, 生命理学研究科, 助教 2018: 名古屋工業大学, 工学(系)研究科(研究院), 特任助教 2017: 名古屋工業大学, 工学(系)研究科(研究院), 研究員
Review Section/Research Field	Principal Investigator Biophysics
Keywords	Principal Investigator 蛋白質 / 生体分子 / 進化 / 生体生命情報学 / 古環境 / ロドプシン様タンパク質 / 生物物理 / クリプトクロム / 光回復酵素 / 構造機能相関 / 祖先配列 / 赤外分光法 / バイオインフォマティクス

Functional analysis of the photolyase/cryptochrome family using databases and experimental methodsPrincipal Investigator
- Principal Investigator
  
  Yamada Daichi
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Biophysics
- Research Institution
  University of Hyogo
  Nagoya Institute of Technology

All 2019 2018 2017

All Journal Article Presentation

[Journal Article] Spectroscopic study of the transmembrane domain of a rhodopsin-phosphodiesterase fusion protein from a unicellular eukaryote2019
- Author(s)
  M. Watari, T. Ikuta, D. Yamada, W. Shihoya, K. Yoshida, S. P. Tsunoda, O. Nureki, and H. Kandori
- Journal Title
  
  J. Biol. Chem
  
  Volume: 294 Issue: 10 Pages: 3432-3443
- DOI
  10.1074/jbc.ra118.006277
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06109, KAKENHI-PROJECT-18H03986, KAKENHI-PROJECT-16H06294, KAKENHI-PROJECT-17K15103
[Journal Article] Engineered Functional Recovery of Microbial Rhodopsin without Retinal-Binding Lysine.2019
- Author(s)
  Yumeka Yamauchi, Masae Konno, Daichi Yamada, Kei Yura, Keiichi Inoue, Oded Beja, Hideki Kandori
- Journal Title
  
  Photochem. Photobiol.
  
  Volume: 印刷中 Issue: 5 Pages: 1116-1121
- DOI
  10.1111/php.13114
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15103, KAKENHI-PUBLICLY-19H04959, KAKENHI-PROJECT-18H03986, KAKENHI-PROJECT-17H03007, KAKENHI-PROJECT-19J10272, KAKENHI-PROJECT-17K19230
[Journal Article] Electron Fate and Mutational Robustness in the Mechanism of (6-4)Photolyase-Mediated DNA Repair2017
- Author(s)
  Dokainish Hisham M.、Yamada Daichi、Iwata Tatsuya、Kandori Hideki、Kitao Akio
- Journal Title
  
  ACS Catalysis
  
  Volume: 7 Issue: 7 Pages: 4835-4845
- DOI
  10.1021/acscatal.7b00751
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15103, KAKENHI-PLANNED-25104002, KAKENHI-PLANNED-25104009, KAKENHI-PROJECT-15H02391, KAKENHI-PROJECT-15H04357
[Presentation] FTIR study of photoactivated cyclase2019
- Author(s)
  Daichi Yamada
- Organizer
  International Symposium on “Optobiotechnology”、名古屋工業大学（愛知県名古屋市）
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15103
[Presentation] Time-resolved spectroscopic study on photoreaction of (6-4) photolyase2019
- Author(s)
  Daichi Yamada, Takashi Nomura, Yuna Nakajima, Minoru Kubo
- Organizer
  The 57th Annual Meeting of the Biophysical Society of Japan、Segaia Convention Center（宮崎県宮崎市）
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15103
[Presentation] 分光法による光受容タンパク質の分子メカニズム研究2019
- Author(s)
  山田大智
- Organizer
  第35回XFEL構造生物ミーティング、SACLA 2階試料準備室（兵庫県佐用郡佐用町）
- Invited
- Data Source
  KAKENHI-PROJECT-17K15103
[Presentation] 分光法によるDNA光修復酵素の分子メカニズム研究2019
- Author(s)
  山田大智
- Organizer
  兵庫県立大学・城研セミナー、研究Ⅱ期棟１階セミナー室（兵庫県赤穂郡上郡町）
- Invited
- Data Source
  KAKENHI-PROJECT-17K15103
[Presentation] FTIR study of photoactivated cyclase2019
- Author(s)
  Daichi Yamada
- Organizer
  International Symposium on “Optobiotechnology”
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15103
[Presentation] The (6-4) Photolyase Reaction ~Role of the Important Residues in Active Center~2018
- Author(s)
  Daichi Yamada, Hisham M. Dokainish, Junpei Yamamoto, Tatsuya Iwata, Elizabeth D. Getzoff, Akio Kitao, and Hideki Kandori
- Organizer
  Asian Biophysics Association Symposium and Annual Meeting of the Australian Society for Biophysics (ABA/ASB2018)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15103
[Presentation] Functional conversion study of photolyase/cryptochrome family proteins2018
- Author(s)
  Daichi Yamada
- Organizer
  9th INTERNATIONAL CONFERENCE ON BIOSCIENCE AND BIOTECHNOLOGY
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15103
[Presentation] (6-4)光回復酵素のDNA修復におけるLys残基の役割2018
- Author(s)
  山田大智、Hisham M. Dokainish、山元淳平、北尾彰朗、神取秀樹
- Organizer
  2017年度中部支部講演会
- Data Source
  KAKENHI-PROJECT-17K15103
[Presentation] Functional conversion of photolyases/cryptochrome superfamily (PCSf): Toward finding the ancestor of PCSf.2018
- Author(s)
  Daichi Yamada
- Organizer
  The 56th Annual Meeting of the Biophysical Society of Japan
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15103
[Presentation] (6-4)光回復酵素のDNA修復機構におけるLys残基の役割2018
- Author(s)
  山田大智、Hisham M. Dokainish、山元淳平、北尾彰朗、神取秀樹
- Organizer
  日本光生物学会協会第20回年会
- Data Source
  KAKENHI-PROJECT-17K15103
[Presentation] Functional conversion of CPD and (6-4) photolyases2017
- Author(s)
  D. Yamada, H. M. Dokainish, T. Iwata, J. Yamamoto, T. Ishikawa, T. Todo, S. Iwai, E. D. Getzoff, K. Yura, A. Kitao, H. Kandori
- Organizer
  KAKENHI International Symposium on "Studying the Function of Soft Molecular Systems"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15103
[Presentation] Elucidation of molecular mechanism of photolyase in DNA repair process2017
- Author(s)
  Hisham M. Dokainish、山田大智
- Organizer
  新学術領域研究「柔らかな分子系」第六回全体合宿会議
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15103
[Presentation] Function conversion between CPD and (6-4) photolyases2017
- Author(s)
  D. Yamada, H. M. Dokainish, T. Iwata, J. Yamamoto, T. Ishikawa, T. Todo, S. Iwai, E. D. Getzoff, K. Yura, A. Kitao, H. Kandori
- Organizer
  19th International Union for Pure and Applied Biophysics Congress 11th European Biophysics Congress
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15103
[Presentation] Low-temperature FTIR study of the repair processes by Xenopus (6-4) photolyase2017
- Author(s)
  D. Yamada, J. Yamamoto, T. Iwata, H. Kandori
- Organizer
  The 55th Annual Meeting of the Biophysical Society of Japan
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15103

1. 角田聡

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Yamada Daichi 山田 大智

Research Projects

Research Products

Co-Researchers

Functional analysis of the photolyase/cryptochrome family using databases and experimental methodsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Spectroscopic study of the transmembrane domain of a rhodopsin-phosphodiesterase fusion protein from a unicellular eukaryote2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Engineered Functional Recovery of Microbial Rhodopsin without Retinal-Binding Lysine.2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Electron Fate and Mutational Robustness in the Mechanism of (6-4)Photolyase-Mediated DNA Repair2017

Author(s)

Journal Title

DOI

Data Source

[Presentation] FTIR study of photoactivated cyclase2019

Author(s)

Organizer

Data Source

[Presentation] Time-resolved spectroscopic study on photoreaction of (6-4) photolyase2019

Author(s)

Organizer

Data Source

[Presentation] 分光法による光受容タンパク質の分子メカニズム研究2019

Author(s)

Organizer

Data Source

[Presentation] 分光法によるDNA光修復酵素の分子メカニズム研究2019

Author(s)

Organizer

Data Source

[Presentation] FTIR study of photoactivated cyclase2019

Author(s)

Organizer

Data Source

[Presentation] The (6-4) Photolyase Reaction ~Role of the Important Residues in Active Center~2018

Author(s)

Organizer

Data Source

[Presentation] Functional conversion study of photolyase/cryptochrome family proteins2018

Author(s)

Organizer

Data Source

[Presentation] (6-4)光回復酵素のDNA修復におけるLys残基の役割2018

Author(s)

Organizer

Data Source

[Presentation] Functional conversion of photolyases/cryptochrome superfamily (PCSf): Toward finding the ancestor of PCSf.2018

Author(s)

Organizer

Data Source

[Presentation] (6-4)光回復酵素のDNA修復機構におけるLys残基の役割2018

Author(s)

Organizer

Data Source

[Presentation] Functional conversion of CPD and (6-4) photolyases2017

Author(s)

Organizer

Data Source

[Presentation] Elucidation of molecular mechanism of photolyase in DNA repair process2017

Author(s)

Organizer

Data Source

[Presentation] Function conversion between CPD and (6-4) photolyases2017

Author(s)

Organizer

Data Source

[Presentation] Low-temperature FTIR study of the repair processes by Xenopus (6-4) photolyase2017

Author(s)

Organizer

Yamada Daichi 山田大智