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Hayashi Hideyuki  林 秀行

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HAYASHI Hideyuki  林 秀行

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Researcher Number 00183913
Other IDs
Affiliation (Current) 2025: 千里金蘭大学, 看護学部, 教授
2025: 大阪医科薬科大学, 医学部, 名誉教授
Affiliation (based on the past Project Information) *help 2022 – 2023: 大阪医科薬科大学, 医学部, 名誉教授
2021 – 2022: 大阪医科薬科大学, 医学部, 教授
2009 – 2020: Osaka Medical College, 医学部, 教授
2004 – 2005: 大阪医科大学, 医学部, 教授
1998 – 2003: 大阪医科大学, 医学部, 助教授 … More
1999: Osaka Medical College, Dept. of Biochemistry, Associate Professor
1994 – 1996: 大阪医科大学, 医学部, 助教授
1993: 大阪医科大学, 医学部, 講師
1990 – 1992: 大阪医科大学, 講師 Less
Review Section/Research Field
Principal Investigator
Functional biochemistry / Structural biochemistry / Structural biochemistry / Bio-related chemistry / Functional biochemistry / Science and Engineering
Except Principal Investigator
Structural biochemistry / Medium-sized Section 43:Biology at molecular to cellular levels, and related fields / Basic Section 43020:Structural biochemistry-related / Physical chemistry / Science and Engineering / Neuroscience in general / Functional biochemistry
Keywords
Principal Investigator
ピリドキサールリン酸 / プロトン移動 / 触媒反応機構 / pKa / 遷移相速度論 / アミノ基転移酵素 / 歪み / X線結晶解析 / 酵素反応機構 / aminotransferase … More / エネルギー障壁 / catalytic-mechanism / proton-transfer / 自由エネルギー / strain / コンフォメーション / 解離基 / pK_a / pyridoxal 5'-phosphate / アスパラギン酸アミノ基転移酵素 / 反応中間体 / 反応速度論 / 立体化学 / 芳香族アミノ酸アミノトランスフェラーゼ / シッフ塩基 / 芳香族アミノ酸デカルボキシラーゼ / ハロゲン化物イオン / 銅イオン / pH依存性 / トーパキノン / キノタンパク質 / 補欠分子族 / 反応駆動力 / エネルギー準位図 / 電子移動 / catalytic mechanism / energy barrier / amine oxidase / tunneling / driving force / proton transfer / 触媒反応 / 理論計算 / コンフォメーション変化 / 蛋白質 / アミン酸化酵素 / トンネル効果 / 駆動力 / energy-barrier / free-energy-profile / pyridoxal-phosphate / 自由エネルギー図 / composite-biocatalyst / transferase / stereochemistry / induced-fit / free-energy / スフィンゴ脂質 / コンポジット触媒 / 転移酵素 / 誘導適合 / pyridoxal phosphate / activation energy / transition state / conformation / proton / dissociation group / 酸塩基化学 / 基質結合過程 / 活性化エネルギー / 遷移状態 / プロトン / X-ray crystallography / guanidinium group / hydrogen bond / reaction intermediate / substrate analog / substrate specificity / aromatic amino acid aminotransferase / ピリドキサミンリン酸 / アスパラギン酸アミノトランスフェラーゼ / リシン / アルギニン / 芳香環 / 酵素反応速度論 / 基質認識機構 / Paracoccus denitrificans / 大腸菌 / X-線結晶解析 / グアニジノ基 / 水素結合 / 基質アナログ / 基質特異性 / 芳香族アミノ酸アミノ基転移酵素 / X線結晶解析 / 量子化学計算 / 補酵素 / 副反応 / プロトン化状態 / ピリドキサール5'-リン酸 / 生成物支援触媒 / 基質支援触媒 / 反応特異性 / エネルギー進位 / 計算化学 / タンパク質のゆらぎ / 銅アミン酸化酵素 / トレオニン合成酵素 / セリンパルミトイル転移酵素 / エネルギー準位 / 反応機構 / キノン酵素 / ピリドキサール酵素 / アスパラギン酸残基 / ヒスチジン残基 / 脱プロトン化 / 互変異構造 … More
Except Principal Investigator
トパキノン / レーザーホトリシス / 光反応ダイナミックス / ピリドキサールリン酸 / アミン酸化酵素 / HAG法 / 補酵素 / 酵素 / X線結晶構造解析 / 酵素反応 / 反応機構 / アミノ基転移酵素 / 量子計算 / 結晶構造 / 結晶構造解析 / 反応中間体 / 結晶 / 蛋白質 / 銅含有アミン酸化酵素 / 量子古典混合計算 / スーパーコンピュータ / molecular dynamics (MD) / 副反応経路 / 反応制御機構 / 反応制御 / スパコン / 自由エネルギー / molecular dynamics / QM/MM / 生成物支援機構 / トレオニン合成酵素 / built-in cofactor / heme / flavin / cobalamin / pyridoxal phosphate / structure activity relationship / coenzyme / composite biocatalyst / キノヘムプロテイン / ビルトイン補酵素 / ヘム / フラビン / コバラミン / ピリドキサルリン酸 / 構造活性相関 / コンポジット生体触媒 / Cerebellar Efferent Pathway / Visual Pathway / Olfactory Pathway / Adenovirus / Transgenic Mouse / Neural Network / Transsynaptic Tracer / Wheat Germ Agglutinin / 小脳遠心性神経回路 / 嗅覚系神経回路 / 視覚回路 / 嗅覚経路 / 小脳遠心性経路 / アデノウイルス / トランスジェニックマウス / 神経回路網 / 経シナプス性トレーサー / WGA / 小麦胚芽レクチン / X-ray crystallography / Structure and function relationship / Substrate specificity / Catalytic activity / Amino acid substitution / Genetic engineering / Pyridoxal / Aminotransferse / ビタミンB6 / 酵素構造 / ピリドキサ-ル / アスパラギン酸 / X線結晶解析 / 機能構造相関 / 基質特異性 / 触媒機能 / アミノ酸残基置換 / 遺伝子工学 / ピリドキサール / X線 / 中性子 / X線結晶構造回析 / 中性子結晶構造回析 / 中性子結晶構造解析 / スフィンゴシン1-リン酸 / 微生物 / 生体分子 / スフィンゴシン1-リン酸リアーゼ / セリンパルミトイル転移酵素 / スフィンゴ脂質 / タンパク質 / 酵素の触媒機構 / コンホメーション変化 / 時間分割構造変化 / 変異型酵素 / ラウエ法 Less
  • Research Projects

    (22 results)
  • Research Products

    (69 results)
  • Co-Researchers

    (36 People)
  •  Visualization of protonated states of dissociative substituents by cooperation of quantum calculations and crystal structures

    • Principal Investigator
      藤橋 雅宏
    • Project Period (FY)
      2022 – 2024
    • Research Category
      Grant-in-Aid for Challenging Research (Exploratory)
    • Review Section
      Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
    • Research Institution
      Osaka Medical and Pharmaceutical University
  •  非凍結結晶を用いた“in crystallo”酵素反応解析

    • Principal Investigator
      村川 武志
    • Project Period (FY)
      2020 – 2024
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 43020:Structural biochemistry-related
    • Research Institution
      Osaka Medical and Pharmaceutical University
  •  In crystallo thermodynamic analysis of the cofactor conformational change of copper amine oxidase

    • Principal Investigator
      Murakawa Takeshi
    • Project Period (FY)
      2017 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Structural biochemistry
    • Research Institution
      Osaka Medical College
  •  Concerted proton/electron transfer mechanism in cofactor-dependent enzymePrincipal Investigator

    • Principal Investigator
      HAYASHI Hideyuki
    • Project Period (FY)
      2015 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Bio-related chemistry
    • Research Institution
      Osaka Medical College
  •  X-ray and neutron crystallographic structure of copper amine oxidase

    • Principal Investigator
      Murakawa Takeshi
    • Project Period (FY)
      2014 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Structural biochemistry
    • Research Institution
      Osaka Medical College
  •  Theoretical elucidation on the full reaction mechanisms of threonine synthase

    • Principal Investigator
      SHOJI MITSUO
    • Project Period (FY)
      2014 – 2016
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Physical chemistry
    • Research Institution
      University of Tsukuba
  •  Reaction specificity of pyridoxal enzymesPrincipal Investigator

    • Principal Investigator
      Hayashi Hideyuki
    • Project Period (FY)
      2012 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Structural biochemistry
    • Research Institution
      Osaka Medical College
  •  Multidimensional energy analysis of pyridoxal-enzyme and quinoenzyme reactionsPrincipal Investigator

    • Principal Investigator
      HAYASHI Hideyuki
    • Project Period (FY)
      2009 – 2011
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Structural biochemistry
    • Research Institution
      Osaka Medical College
  •  Studies on the molecular mechanism of sphingolipid metabolism based on the crystal structure of the enzymes

    • Principal Investigator
      IKUSHIRO Hiroko
    • Project Period (FY)
      2009 – 2011
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Functional biochemistry
    • Research Institution
      Osaka Medical College
  •  Studies on the proton transfer processes in pyridoxal enzymesPrincipal Investigator

    • Principal Investigator
      HAYASHI Hideyuki
    • Project Period (FY)
      2004 – 2005
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Functional biochemistry
    • Research Institution
      Osaka Medical College
  •  Molecular Design and Evolution Engineering for Compositc Biochatalysts

    • Principal Investigator
      TORAYA Tetsuo
    • Project Period (FY)
      2001 – 2003
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      KYOTO UNIVERSITY
  •  Designing composite biocatalysts by analysis of the proton-transfer process in pyridoxal enzymesPrincipal Investigator

    • Principal Investigator
      HAYASHI Hideyuki
    • Project Period (FY)
      2001 – 2003
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      Osaka Medical College
  •  Proton-transfer mechanism of pyridoxal enzymes studied by 3D-free energy profilePrincipal Investigator

    • Principal Investigator
      HAYASHI Hideyoshi
    • Project Period (FY)
      2001 – 2002
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Structural biochemistry
    • Research Institution
      Osaka Medical College
  •  The proton-transfer mechanism of the catalytic reactions of pyridoxal enzymesPrincipal Investigator

    • Principal Investigator
      HAYASHI Hideyuki
    • Project Period (FY)
      1999 – 2000
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Functional biochemistry
    • Research Institution
      Osaka Medical College
  •  Development and application of a novel genetic strategy for visualization of functional neural pathways

    • Principal Investigator
      YOSHIHARA Yoshihiro
    • Project Period (FY)
      1998 – 1999
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Neuroscience in general
    • Research Institution
      RIKEN
  •  タンパク質内部高秩序環境場におけるピリドキサールリン酸の光反応ダイナミックス

    • Principal Investigator
      原 三郎
    • Project Period (FY)
      1996
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Kyoto Institute of Technology
  •  タンパク質内部高秩序環境場におけるピリドキサールリン酸の光反応ダイナミックス

    • Principal Investigator
      原 三郎
    • Project Period (FY)
      1995
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Kyoto Institute of Technology
  •  高品質結晶によるアミノ基転移酵素の反応中間体の高分解能構造解析

    • Principal Investigator
      HIROTSU Ken
    • Project Period (FY)
      1994 – 1995
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Osaka City University
  •  タンパク質内部高秩序環境場におけるピリドキサールリン酸の光反応ダイナミックス

    • Principal Investigator
      原 三郎
    • Project Period (FY)
      1994
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Kyoto Institute of Technology
  •  Substrate-Recognition Mechanism of Aromatic Amino Acid AminotransferasePrincipal Investigator

    • Principal Investigator
      HAYASHI Hideyuki
    • Project Period (FY)
      1994 – 1996
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Functional biochemistry
    • Research Institution
      Osaka Medical College
  •  芳香族L-アミノ酸デカルボキシラーゼの構造と機能の解析Principal Investigator

    • Principal Investigator
      林 秀行
    • Project Period (FY)
      1993
    • Research Category
      Grant-in-Aid for Encouragement of Young Scientists (A)
    • Research Field
      Structural biochemistry
    • Research Institution
      Osaka Medical College
  •  Structure and Function of Aspartate Aminotransferase

    • Principal Investigator
      MORINO Yoshimasa
    • Project Period (FY)
      1990 – 1992
    • Research Category
      Grant-in-Aid for international Scientific Research
    • Research Institution
      KUMAMOTO UNIVERSITY

All 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2006 2005 2004 Other

All Journal Article Presentation Book

  • [Book] ビタミン総合事典2011

    • Author(s)
      生城浩子, 林秀行
    • Publisher
      朝倉書店
    • Data Source
      KAKENHI-PROJECT-21570149
  • [Book] ビタミン総合事典2011

    • Author(s)
      林秀行, 生城浩子
    • Publisher
      朝倉書店
    • Data Source
      KAKENHI-PROJECT-21570149
  • [Book] タンパク質科学 第9章 触媒機能(後藤祐児・桑島邦博・谷澤克行編)2005

    • Author(s)
      林秀行
    • Total Pages
      579
    • Publisher
      化学同人
    • Data Source
      KAKENHI-PROJECT-16570125
  • [Journal Article] Molecular mechanism of a large conformational change of the quinone cofactor in the semiquinone intermediate of bacterial copper amine oxidase2022

    • Author(s)
      Shoji Mitsuo、Murakawa Takeshi、Nakanishi Shota、Boero Mauro、Shigeta Yasuteru、Hayashi Hideyuki、Okajima Toshihide
    • Journal Title

      Chemical Science

      Volume: 13 Issue: 36 Pages: 10923-10938

    • DOI

      10.1039/d2sc01356h

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K06530, KAKENHI-PROJECT-22H04916, KAKENHI-PLANNED-20H05453, KAKENHI-PUBLICLY-22H04757, KAKENHI-PUBLICLY-22H04800
  • [Journal Article] Microcrystal preparation for serial femtosecond X-ray crystallography of bacterial copper amine oxidase2021

    • Author(s)
      Murakawa Takeshi、Suzuki Mamoru、Arima Toshi、Sugahara Michihiro、Tanaka Tomoyuki、Tanaka Rie、Iwata So、Nango Eriko、Tono Kensuke、Hayashi Hideyuki、Fukui Kenji、Yano Takato、Tanizawa Katsuyuki、Okajima Toshihide
    • Journal Title

      Acta Crystallographica Section F Structural Biology Communications

      Volume: 77 Issue: 10 Pages: 356-363

    • DOI

      10.1107/s2053230x21008967

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19K05694, KAKENHI-PLANNED-19H05781, KAKENHI-PUBLICLY-20H05448, KAKENHI-PROJECT-19H00923, KAKENHI-PROJECT-20K06238, KAKENHI-PROJECT-20K06530, KAKENHI-PLANNED-19H05777
  • [Journal Article] Unique protonation states of aspartate and topaquinone in the active site of copper amine oxidase2020

    • Author(s)
      Shoji Mitsuo、Murakawa Takeshi、Boero Mauro、Shigeta Yasuteru、Hayashi Hideyuki、Okajima Toshihide
    • Journal Title

      RSC Advances

      Volume: 10 Issue: 63 Pages: 38631-38639

    • DOI

      10.1039/d0ra06365g

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K05694, KAKENHI-PROJECT-20K06530, KAKENHI-PUBLICLY-20H05088, KAKENHI-PUBLICLY-20H05448, KAKENHI-PLANNED-20H05453, KAKENHI-PUBLICLY-20H05497, KAKENHI-PROJECT-17K07317
  • [Journal Article] In crystallo thermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase2018

    • Author(s)
      Murakawa Takeshi、Baba Seiki、Kawano Yoshiaki、Hayashi Hideyuki、Yano Takato、Kumasaka Takashi、Yamamoto Masaki、Tanizawa Katsuyuki、Okajima Toshihide
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 116 Issue: 1 Pages: 135-140

    • DOI

      10.1073/pnas.1811837116

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-16KT0055, KAKENHI-PROJECT-17K07317, KAKENHI-PROJECT-15K05573
  • [Journal Article] Molecular Mechanism of the Reaction Specificity in Threonine Synthase: Importance of the Substrate Conformations2017

    • Author(s)
      Ujiie Yuzuru,Tanaka Wataru,Hanaoka Kyohei,Harada Ryuhei,Kayanuma Megumi,Shoji Mitsuo,Murakawa Takeshi,Ishida Toyokazu,Shigeta Yasuteru,Hayashi Hideyuki
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 121 Issue: 22 Pages: 5536-5543

    • DOI

      10.1021/acs.jpcb.7b02932

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15K05573, KAKENHI-PROJECT-16H06164, KAKENHI-PROJECT-15J03797
  • [Journal Article] Role of the Tyr270 residue in 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase from Mesorhizobium loti.2017

    • Author(s)
      Kobayashi J., Yoshida H., Yagi T., Kamitori S., Hayashi H., Mizutani K., Takahashi N., Mikami B.
    • Journal Title

      J. Biosci. Bioeng.

      Volume: 123 Issue: 2 Pages: 154-162

    • DOI

      10.1016/j.jbiosc.2016.07.022

    • NAID

      40021112404

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-16H04909, KAKENHI-PROJECT-15K05573
  • [Journal Article] Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions.2015

    • Author(s)
      Murakawa, T., Hamaguchi, A., Nakanishi, S., Kataoka, M., Nakai, T., Kawano, Y., Yamaguchi, H., Hayashi, H., Tanizawa, K., and Okajima, T.
    • Journal Title

      J. Biol. Chem.

      Volume: 290 Issue: 38 Pages: 23094-23109

    • DOI

      10.1074/jbc.m115.662726

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15K05573, KAKENHI-PROJECT-15K07391, KAKENHI-PROJECT-26440037
  • [Journal Article] A QM/MM Study of the l-Threonine Formation Reaction of Threonine Synthase: Implications into the Mechanism of the Reaction Specificity.2014

    • Author(s)
      Shoji, M., Hanaoka, K., Ujiie, Y., Tanaka, W., Kondo, D., Umeda, H., Kamoshida, Y., Kayanuma, M., Kamiya, K., Shiraishi, K., Machida, Y., Murakawa, T., and Hayashi, H.
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 136 Issue: 12 Pages: 4525-4533

    • DOI

      10.1021/ja408780c

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24570140, KAKENHI-PROJECT-24750007
  • [Journal Article] A QM/MM Study of the l-Threonine Formation Reaction of Threonine Synthase: Implications into the Mechanism of the Reaction Specificity2014

    • Author(s)
      M.Shoji, K.Hanaoka, Y.Ujiie, W.Tanaka, D.Kondo, H.Umeda, Y.Kamoshida, M.Kayanuma, K.Kamiya, K.Shiraishi,Y.Machida, T.Murakawa, H.Hayashi
    • Journal Title

      Journal of the American Chemical Society

      Volume: 136

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-26410002
  • [Journal Article] Structural insights into the substrate specificity of bacterial copper amine oxidase obtained by using irreversible inhibitors2012

    • Author(s)
      Murakawa T, Hayashi H, Taki M, Yamamoto Y, Kawano Y, Tanizawa K, Okajima T.
    • Journal Title

      J Biochem

      Volume: 151 Pages: 167-178

    • NAID

      10031166055

    • Data Source
      KAKENHI-PROJECT-21570120
  • [Journal Article] Structural insights into the substrate specificity of bacterial copper amine oxidase obtained by using irreversible inhibitors2012

    • Author(s)
      Hideyuki Hayashi, Takeshi Murakawa
    • Journal Title

      J.Biochem.

      Volume: 151 Issue: 2 Pages: 167-178

    • DOI

      10.1093/jb/mvr125

    • NAID

      10031166055

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21570120, KAKENHI-PROJECT-23685039
  • [Journal Article] Mechanistic enzymology of serine palmitoyltransferase2011

    • Author(s)
      Ikushiro, H., Hayashi, H.
    • Journal Title

      Biochim Biophys Acta.

      Volume: Vol.1814, No.11 Pages: 1474-1480

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21570149
  • [Journal Article] Analysis of mammalian histidine decarboxylase dimerization interface reveals an electrostatic hotspot important for catalytic site topology and function2011

    • Author(s)
      Moya-Garcia, A. A., Rodriguez-Agudo, D., Hayashi, H., Medina, M. A., Urdiales, J. L., Sanchez-Jimenez, F.
    • Journal Title

      J. Chem. Theory. Comput

      Volume: 7 Pages: 1935-1942

    • Data Source
      KAKENHI-PROJECT-21570120
  • [Journal Article] Role of a conserved arginine residue during catalysis in serine palmitoyltransferase2011

    • Author(s)
      Lowther, J., Charmier, G., Raman, M. C., Ikushiro, H., Hayashi, H., Campopiano, D. J.
    • Journal Title

      FEBS Lett

      Volume: 585 Pages: 1729-1734

    • Data Source
      KAKENHI-PROJECT-21570120
  • [Journal Article] セリンパルミトイル転移酵素の触媒反応におけるHis159の多機能的役割2011

    • Author(s)
      生城浩子, 白岩有桂, 林秀行
    • Journal Title

      ビタミン

      Volume: 84巻, 9号 Pages: 423-431

    • NAID

      110007730458

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21570149
  • [Journal Article] 細菌セリンパルミトイル転移酵素の構造と触媒機構解析2011

    • Author(s)
      生城浩子, 林秀行
    • Journal Title

      生化学

      Volume: 83巻, 2号 Pages: 105-110

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21570149
  • [Journal Article] Role of a conserved arginine residue during catalysis in serine palmitoyltransferase2011

    • Author(s)
      Hideyuki Hayashi
    • Journal Title

      FEBS Lett.

      Volume: 585 Issue: 12 Pages: 1729-1734

    • DOI

      10.1016/j.febslet.2011.04.013

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21570120, KAKENHI-PROJECT-21570149
  • [Journal Article] Product-assisted catalysis as the basis of the reaction specificity of threonine synthase2011

    • Author(s)
      Murakawa, T., Machida, Y., Hideyuki Hayashi
    • Journal Title

      J. Biol. Chem

      Volume: 286 Pages: 2774-2784

    • Data Source
      KAKENHI-PROJECT-21570120
  • [Journal Article] Analysis of mammalian histidine decarboxylase dimerization interface reveals an electrostatic hotspot important for catalytic site topology and function2011

    • Author(s)
      Hideyuki Hayashi
    • Journal Title

      J.Chem.Theory Comput.

      Volume: 7 Issue: 6 Pages: 1935-1942

    • DOI

      10.1021/ct100690p

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21570120
  • [Journal Article] Role of a conserved arginine residue during catalysis in serine palmitoyltransferase.2011

    • Author(s)
      Lowther, J, Charmier, G., Raman, M. C., Ikushiro, H., Hayashi, H., Campopiano, D. J.
    • Journal Title

      FEBS Lett.

      Volume: Vol.585, No.12 Pages: 1729-1734

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21570149
  • [Journal Article] Multifunctional role of His159in the catalytic reaction of serine palmitoyltransferase.2009

    • Author(s)
      Shiraiwa, Y., Ikushiro, H., Hayashi, H.
    • Journal Title

      J. Biol. Chem.

      Volume: Vol.284, No.23 Pages: 15487-15495

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21570149
  • [Journal Article] Structural insights into the enzymatic mechanism of serine palmitoyltransferase from Sphingobacterium multivorum.2009

    • Author(s)
      Ikushiro, H., Islam, M. M., Okamoto, A., Hoseki, J., Murakawa, T., Fujii, S., Miyahara, I., Hayashi, H.
    • Journal Title

      J. Biochem.

      Volume: Vol.146, No.4 Pages: 549-562

    • NAID

      10026304060

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21570149
  • [Journal Article] Multifunctional role of His159 in the catalytic reaction of serine palmitoyltransferase2009

    • Author(s)
      Shiraiwa, Y., Ikushiro, H., Hayashi, H.
    • Journal Title

      J. Biol. Chem

      Volume: Vol.284 Pages: 15487-15495

    • NAID

      110007730458

    • Data Source
      KAKENHI-PROJECT-21570120
  • [Journal Article] Structural insights into the enzymatic mechanism of serine palmitoyltransferase from Sphingobacterium multivorum2009

    • Author(s)
      Ikushiro, H., Islam, M. M., Okamoto, A., Hoseki, J., Murakawa, T., Fujii, S., Miyahara, I., Hayashi, H.
    • Journal Title

      J Biochem

      Volume: 146 Pages: 549-562

    • NAID

      10026304060

    • Data Source
      KAKENHI-PROJECT-21570120
  • [Journal Article] Quantum mechanical hydrogen tunneling in bacterial copper amine oxidase reaction.2006

    • Author(s)
      Murakawa, T., Okajima, T., Kuroda, S., Nakamoto, T., Taki, M., Yamamoto, Y., Hayashi, H., Tanizawa, K.
    • Journal Title

      Biochem Biophys Res Commun 342

      Pages: 414-423

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16570125
  • [Journal Article] Molecular cloning, expression, and characterization of pyridoxamine-pyruvate aminotransferase.2006

    • Author(s)
      Yoshikane, Y., Yokochi, N., Ohnishi, K., Hayashi, H., Yagi, T.
    • Journal Title

      Biochem.J. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16570125
  • [Journal Article] Kinetic and Structural Studies on the Catalytic Role of the Aspartic Acid Residue Conserved in Copper Amine Oxidase.2006

    • Author(s)
      Chiu, Y.C., Okajima, T., Murakawa, T., Uchida, M., Taki, M., Hirota, S., Kim, M., Yamaguchi, H., Kawano, Y., Kamiya, N., Kuroda, S., Hayashi, H., Yamamoto, Y., Tanizawa, K.
    • Journal Title

      Biochemistry 45

      Pages: 41055-4120

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16570125
  • [Journal Article] Binding of C5-dicarboxylic substrate to aspartate aminotransferase : implications for the conformational change at the transaldimination step.2005

    • Author(s)
      Islam, M.M., Goto, M., Miyahara, I., Ikushiro, H., Hirotsu, K., Hayashi, H.
    • Journal Title

      Biochemistry 44

      Pages: 8218-8229

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16570125
  • [Journal Article] Crystal structure of a putative aspartate aminotransferase belonging to subgroup IV.2004

    • Author(s)
      Katsura, Y, Shirouzu, M., Yamaguchi, H., Ishitani, R., Nureki, O., Kuramitsu, S., Hayashi, H., Yokoyama, S.
    • Journal Title

      Proteins 55

      Pages: 487-492

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16570125
  • [Presentation] 銅含有アミン酸化酵素触媒機構の“in crystallo”熱力学的解析2019

    • Author(s)
      村川武志,馬場清喜,河野能顕,林秀行,矢野貴人,熊坂崇,山本雅貴,谷澤克行,岡島俊英
    • Organizer
      日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-17K07317
  • [Presentation] ヒスチジノールリン酸アミノトランスフェラーゼの基質認識機構2018

    • Author(s)
      林秀行,村川武志
    • Organizer
      日本化学会第98春季年会
    • Data Source
      KAKENHI-PROJECT-15K05573
  • [Presentation] In crystallo thermodynamic analysisによる銅アミン酸化酵素の反応機構解析2018

    • Author(s)
      村川武志,馬場清喜,河野能顕,林秀行,矢野貴人,熊坂崇,山本雅貴,谷澤克行,岡島俊英,
    • Organizer
      酵素補酵素研究会
    • Data Source
      KAKENHI-PROJECT-17K07317
  • [Presentation] トレオニン合成酵素の反応機構2018

    • Author(s)
      町田康博,村川武志,境晶子,林秀行
    • Organizer
      日本ビタミン学会第70回大会
    • Data Source
      KAKENHI-PROJECT-15K05573
  • [Presentation] レオニン合成酵素における生成物支援機構の理論的解明2016

    • Author(s)
      氏家謙、○庄司光男、原田隆平、村川武志、重田育照、林秀行
    • Organizer
      第54回生物物理会年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-11-25
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26410002
  • [Presentation] 2.Analysis of the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter Globiformis.2016

    • Author(s)
      Hiroshi Yamaguchi, Takeshi Murakawa, Misumi Kataoka, Yoshiaki Kawano, Hideyuki Hayashi, Katsuyuki Tanizawa, and Toshihide Okajima.
    • Organizer
      ISDSB2016
    • Place of Presentation
      Tennessee, USA.
    • Year and Date
      2016-08-07
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26440037
  • [Presentation] X-ray crystallographic structure of semiquinone radical intermediate formed in bacterial copper amine oxidase.2016

    • Author(s)
      Toshihide Okajima, Tadashi Nakai1 , Katsuyuki Tanizawa , Takeshi Murakawa , and Hideyuki Hayashi.
    • Organizer
      ICC05-AEM2016
    • Place of Presentation
      Unazuki, Japan.
    • Year and Date
      2016-09-04
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26440037
  • [Presentation] Strain as the driving force for catalysis in aspartate aminotransferase2016

    • Author(s)
      Hideyuki Hayashi and Takeshi Murakawa
    • Organizer
      V Russian Congress on Biochemistry
    • Place of Presentation
      Sochi, Russian Federation
    • Year and Date
      2016-10-04
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K05573
  • [Presentation] Molecular dynamics study on the molecular mechanism of product-assisted catalysis in threonine synthase2015

    • Author(s)
      氏家謙,田中弥,庄司光男,原田隆平,栢沼愛,重田育照,村川武志,林秀行
    • Organizer
      第43回構造活性相関シンポジウム・第10回薬物の分子設計と開発に関する日中シンポジウム
    • Place of Presentation
      新潟
    • Year and Date
      2015-09-27
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-24570140
  • [Presentation] トレオニン合成酵素における生成物支援触媒機構についての理論的解明2015

    • Author(s)
      庄司光男,氏家謙,栢沼愛,重田育照,村川武志,林秀行
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢
    • Year and Date
      2015-09-13
    • Data Source
      KAKENHI-PROJECT-24570140
  • [Presentation] Energetics of the proton-transfer mechanism in aspartate aminotransferase2015

    • Author(s)
      Hideyuki Hayashi, Takeshi Murakawa, Mitsuo Shoji, Yasuteru Shigeta
    • Organizer
      Pacifichem 2015
    • Place of Presentation
      Honolulu, USA
    • Year and Date
      2015-12-15
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K05573
  • [Presentation] Theoretical elucidation on the molecular mechanism of product assited catalysis of threonine synthase2015

    • Author(s)
      Mitsuo Shoji, Tuzuru Ujiie, Megumi Kayanuma, Yasuteru Shigeta, Takeshi Murakawa, Hideyuki Hayashi
    • Organizer
      The 53rd Annual Meeting of the BSJ
    • Place of Presentation
      金沢大学、石川県金沢市
    • Year and Date
      2015-09-14
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26410002
  • [Presentation] Molecular dynamics study on the key catalytic intermediates of threonine synthase2015

    • Author(s)
      Mitsuo Shoji, Yuzuru Ujiie, Ryuhei Harada, Megumi Kayanuma, Yasuteru Shigeta, Takeshi Murakawa, Hideyuki Hayashi
    • Organizer
      The 29th Annual Symposium of the Protein Society
    • Place of Presentation
      Barcelona, Spain
    • Year and Date
      2015-07-22
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-24570140
  • [Presentation] Molecular dynamics study on the key catalytic intermediates of threonine synthase2015

    • Author(s)
      Mitsuo Shoji, Yuzuru Ujiie, Ryuhei Harada, Megumi Kayanuma, Yasuteru Shigeta, Takeshi Murakawa, Hideyuki Hayashi
    • Organizer
      29th Annual Symposium of the Protein Society
    • Place of Presentation
      Fira de Barcelona Balcelona, Balcelona , Spain
    • Year and Date
      2015-07-22
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26410002
  • [Presentation] "Super-closed” structure of aspartate aminotransferase unveils the mechanism for the substate-induced transaldimination process2015

    • Author(s)
      Hideyuki Hayashi, Takeshi Murakawa, Ikuko Miyahara
    • Organizer
      Biocatalysis-2015
    • Place of Presentation
      Moscow, Russia
    • Year and Date
      2015-06-21
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K05573
  • [Presentation] トレオニン合成酵素の反応機構についての理論的研究:反応特異性決定過程の解明2014

    • Author(s)
      庄司光男,氏家謙,田中弥,栢沼愛,梅田宏明,町田康博,村川武志,林秀行
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋
    • Data Source
      KAKENHI-PROJECT-24570140
  • [Presentation] QM/MM study of the L-threonine formation reaction of threonine synthase: mechanism of the product-assisted catalysis2014

    • Author(s)
      Mitsuo Shoji, Y.Ujiie, W.Tanaka, M.Kayanuma, R.Harada, H.Umeda, Y.Shigeta, T.Murakawa, H.Hayashi
    • Organizer
      computational science workshop 2014 (oral)
    • Place of Presentation
      筑波国際会議場、茨城県
    • Year and Date
      2014-08-22
    • Invited
    • Data Source
      KAKENHI-PROJECT-26410002
  • [Presentation] QM/MM 法によるトレオニン合成酵素の反応制御機構の理論解明2014

    • Author(s)
      庄司光男,氏家謙,田中弥,栢沼愛,梅田宏明,村川武,林秀行,重田育照
    • Organizer
      理論化学討論会
    • Place of Presentation
      名古屋大学、愛知県
    • Year and Date
      2014-05-22
    • Data Source
      KAKENHI-PROJECT-26410002
  • [Presentation] トレオニン合成酵素における反応特異性についての理論的解明2013

    • Author(s)
      庄司光男,氏家謙,田中弥,花岡恭平,梅田宏明,栢沼愛,神谷克政,白石賢二,町田康博,村川武志,林秀行
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      横浜
    • Data Source
      KAKENHI-PROJECT-24570140
  • [Presentation] 分子動力学法によるトレオニン合成酵素の反応特異性についての理論的解明2013

    • Author(s)
      氏家謙,田中弥,花岡恭平,庄司光男,栢沼愛,神谷克政,白石賢二,町田康博,村川武志,林秀行
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      横浜
    • Data Source
      KAKENHI-PROJECT-24570140
  • [Presentation] トレオニン合成酵素における反応特異性決定過程の理論解明2013

    • Author(s)
      庄司光男,花岡恭平,氏家謙,田中弥,梅田宏明,栢沼愛,神谷克政,白石賢二,町田康博,村川武志,林秀行
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      鳥取
    • Data Source
      KAKENHI-PROJECT-24570140
  • [Presentation] トレオニン合成酵素におけるリン酸脱離以降の反応機構についての理論的解明2012

    • Author(s)
      庄司 光男,花岡 恭平,近藤 大生,田口 真彦,栢沼 愛,梅田 宏明,鴨志田 良和,神谷 克政,白石 賢二,村川 武志,林 秀行
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      マリンメッセ福岡
    • Data Source
      KAKENHI-PROJECT-24570140
  • [Presentation] トレオニン合成酵素の触媒性リン酸イオン結合残基の役割2012

    • Author(s)
      町田 康博,村川 武志,庄司 光男,林 秀行
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      マリンメッセ福岡
    • Data Source
      KAKENHI-PROJECT-24570140
  • [Presentation] Product-assisted catalysis is the basis of the reaction specificity of threonine synthase2011

    • Author(s)
      Hideyuki Hayashi
    • Organizer
      The Third International Conference on Cofactors
    • Place of Presentation
      University of Turku, Turku, Finland
    • Year and Date
      2011-07-11
    • Data Source
      KAKENHI-PROJECT-21570120
  • [Presentation] 生成物支援触媒によってもたらされる酵素の反応特異性2011

    • Author(s)
      村川武志, 林秀行
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      吹田
    • Year and Date
      2011-06-08
    • Data Source
      KAKENHI-PROJECT-21570120
  • [Presentation] Acid-base chemistry of the catalytic reaction of the bacterial copper amine oxidase2011

    • Author(s)
      村川武志, 岡島俊英, 濱口章央, 谷澤克行, 林秀行
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      京都
    • Year and Date
      2011-09-22
    • Data Source
      KAKENHI-PROJECT-21570120
  • [Presentation] 銅含有アミン酸化酵素の触媒機構:酸化的半反応中間体の立体構造解析2010

    • Author(s)
      喜久川政吾, 岡島俊英, 濱口章央, 村川武志, 林秀行, 谷澤克行
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-07
    • Data Source
      KAKENHI-PROJECT-21570120
  • [Presentation] トレオニン合成酵素の分光学的および速度論的解析2010

    • Author(s)
      村川武志, 林秀行
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-07
    • Data Source
      KAKENHI-PROJECT-21570120
  • [Presentation] 銅アミン酸化酵素反応はトパセミキノンラジカル中間体を経由して進行する2009

    • Author(s)
      濱口章央, 岡島俊英, 谷澤克行, 村川武志, 林秀行
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-22
    • Data Source
      KAKENHI-PROJECT-21570120
  • [Presentation] 速度論および構造解析に基づく酵素触媒反応におけるプロトントンネリング機構の解析2009

    • Author(s)
      村川武志, 岡島俊英, 谷澤克行, 林秀行
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-22
    • Data Source
      KAKENHI-PROJECT-21570120
  • [Presentation] QM/MM study on the L-threonine formation reaction of threonine synthase

    • Author(s)
      Mitsuo Shoji, Yuzuru Ujiie, Wataru Tanaka, Megumi Kayanuma, Ryuhei Harada, Hiroaki Umeda, Yasuteru Shigeta, Takeshi Murakawa, Hideyuki Hayashi
    • Organizer
      QSCP XIX
    • Place of Presentation
      Tamkang University, Taipei, Taiwan
    • Year and Date
      2014-11-11 – 2014-11-17
    • Data Source
      KAKENHI-PROJECT-26410002
  • [Presentation] 銅アミン酸化酵素のTPQ生成反応と触媒反応における保存性Asn残基の役割

    • Author(s)
      村川武志,中西将太,元山暁仁,林秀行,谷澤克行,岡島俊英
    • Organizer
      日本蛋白質科学会
    • Place of Presentation
      横浜
    • Year and Date
      2014-06-25 – 2014-06-27
    • Data Source
      KAKENHI-PROJECT-26440037
  • [Presentation] トレオニン合成酵素における生成物支援触媒機構解明のための精密自由エネルギー計算

    • Author(s)
      庄司光男, 氏家謙, 田中弥, 栢沼愛, 梅田宏明, 重田育照, 村川武志, 林秀行
    • Organizer
      日本生化学会大会(ポスター)
    • Place of Presentation
      京都国際会議場、京都府
    • Year and Date
      2014-10-15 – 2014-10-18
    • Data Source
      KAKENHI-PROJECT-26410002
  • [Presentation] トレオニン合成酵素の触媒反応 前半部分の反応機構解析

    • Author(s)
      町田康博,村川武志,庄司光男,林秀行
    • Organizer
      第61回日本生化学会近畿支部例会
    • Place of Presentation
      京都
    • Year and Date
      2014-05-17 – 2015-05-17
    • Data Source
      KAKENHI-PROJECT-24570140
  • [Presentation] 銅アミン酸化酵素のTPQ補酵素とその前駆体Tyr残基のコンフォメーション制御の分子機構

    • Author(s)
      村川武志,中西将太,元山暁仁,林秀行,谷澤克行,岡島俊英
    • Organizer
      日本生化学会
    • Place of Presentation
      京都
    • Year and Date
      2014-10-15 – 2014-10-18
    • Data Source
      KAKENHI-PROJECT-26440037
  • [Presentation] Conformational flexibility of the topa quinone cofactor in copper amine oxidase revealed by site-specific mutagenesis of the neighboring conserved asparagine residue

    • Author(s)
      Takeshi Murakawa, Hideyuki Hayashi, Katsuyuki Tanizawa, Toshihide Okajima
    • Organizer
      ICC-04
    • Place of Presentation
      イタリア,パルマ
    • Year and Date
      2014-08-24 – 2014-08-30
    • Data Source
      KAKENHI-PROJECT-26440037
  • [Presentation] トレオニン合成酵素の触媒過程前半部分の解析

    • Author(s)
      林秀行,村川武志,庄司光男
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      船橋
    • Year and Date
      2015-03-26 – 2015-03-29
    • Data Source
      KAKENHI-PROJECT-24570140
  • 1.  TAKESHI Murakawa (90445990)
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  • 2.  HIROTSU Ken (10047269)
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  • 3.  Shoji Mitsuo (00593550)
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  • 4.  原 三郎 (00028193)
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  • 5.  林 加恵子 (00214544)
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  • 6.  KAGAMIYAMA Hiroyuki (80028555)
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  • 7.  YANO Takato (40239827)
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  • 8.  KURAMITSU Seiki (60153368)
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  • 9.  馬場 清喜 (00437344)
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  • 10.  KIRSCH J.F.
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  • 11.  IKUSHIRO Hiroko (10280702)
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  • 12.  MORINO Yoshimasa (30028352)
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  • 13.  TANASE Sumio (20112401)
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  • 14.  YOSHIHARA Yoshihiro (20220717)
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  • 15.  MORI Kensaku (60008563)
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  • 16.  NODA Tetsuo (10183550)
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  • 17.  TORAYA Tetsuo (50135597)
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  • 18.  HAYASHI Katsuyuki (20133134)
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  • 19.  TORAYA Tetsuo (70026318)
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  • 20.  SHIMADA Hideo (80095611)
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  • 21.  MIZUGUCHI Hiroyuki (40247838)
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  • 22.  YAMAMOTO Daisuke (50240106)
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  • 23.  樋口 泰一 (40046868)
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  • 24.  堀池 喜八郎 (80089870)
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  • 25.  三浦 洌 (70093466)
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  • 26.  石井 誠志 (10247851)
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  • 27.  藤橋 雅宏 (10397581)
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  • 28.  ARNONE A.
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  • 29.  METZLER D.E.
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  • 30.  FUJITA Hiroko
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  • 31.  JISHAGE Kouichi
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  • 32.  UJIIE YUZURU
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  • 33.  TANAKA WATARU
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  • 34.  川崎 美和
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  • 35.  岡島 俊英
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  • 36.  三上 文三
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