KUROKOCHI HIROYUKI 黒河内寛之

… Alternative Names

KUROKOCHI Hiroyuki 黒河内寛之

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Researcher Number	00609000
Other IDs
Affiliation (Current)	2025: 独立行政法人国立科学博物館, 植物研究部, 協力研究員
Affiliation (based on the past Project Information) *help	2023 – 2024: 独立行政法人国立科学博物館, 植物研究部, 協力研究員 2017 – 2023: 東京大学, 大学院農学生命科学研究科(農学部), 助教 2016: 東京大学, アジア生物資源環境研究センター, 特任研究員 2013 – 2015: 東京大学, アジア生物資源環境研究センター, 助教 2012: 東京大学, 大学院・農学生命科学研究科, 特任助教
Review Section/Research Field	Principal Investigator Environmental and ecological symbiosis Except Principal Investigator Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields / Forest science / Basic Section 40010:Forest science-related / Forest science
Keywords	Principal Investigator マイクロサテライトマーカー / 次世代アンプリコンシーケンシング / 土壌微生物 / まつたけ山施業 / マイクロバイオーム / リター除去 / 灌木処理 / 次世代シーケンサー / SSRマーカー / マツタケ … More / アカマツ林の皆伐と更新 / マツタケ山施業と土壌含水率 / マツタケ山施業と土壌温度 / マツタケのSSR解析 / マツタケの遺伝構造 / マツタケ検出 / 土壌呼吸 / 菌糸同定 / 土壌DNA / 遺伝構造 / 全国スケール / 土壌真菌 / 土壌細菌 / 土壌真菌相 / 土壌細菌相 / メタゲノム解析 / 個体識別 / マツタケシロ … More Except Principal Investigator 葉緑体DNA / マツタケ / チョウザメ / アユ / 希少樹木 / 次世代シーケンサー / 核SSR / 核SSRマーカー / スマ・クロマグロ / ラディエーションハイブリッド法 / デジタルマッピング / ハイブリッド連鎖解析 / ハプロイド連鎖解析 / 整列化 / ラディエーションハイブリッド / DGM / デジタルゲノムマッピング / マッピング / ゲノム / ゲノムアセンブル / SELDLA / 超高精度連鎖地図 / 雌性発生・単為発生 / 食用性キノコ / ブリ×ヒラマサ / ニホンウナギ×オオウナギ / ニホンウナギ×マアナゴ / クロマグロ×スマ / ハイブリッドシーケンシング / ハプロイドシーケンシング / ダブルハプロイド / エクソソーム / 半数体 / 雑種個体 / ハイブリッド個体 / SNPタイピング / 連鎖地図 / 非モデル生物 / ゲノム解析 / 連鎖解析 / ハイブリッド / ハプロイド / 全ゲノムSNPタイピング / シイタケゲノム / マツタケゲノム解読 / ナマズ・ギギ / チョウザメ・ヘラチョウザメ / アユ半数体 / ハプロイドゲノムシーケンシング / ハイブリッドゲノムシーケンシング / クロマグロ / トゲウオ / ニホンウナギ / ハイブリッド連鎖解析法 / ハプロイド連鎖解析法 / 環境ＤＮＡ / 種特異マーカー / 生育適地 / アンプリコンシーケンス / デジタルPCR / GIS / 環境DNA / 立地環境 / 現地外保全 / 核DNA / DNA分析 / 遺伝的多様性 / 希少樹種 / ドングリピット / どんぐりピット / 遺伝構造 / 人為影響 / 導入履歴 / 景観 / マイクロサテライトマーカー / 甲府盆地 / 全国 / 林分レベル / 全国レベル / 葉緑体ハプロタイプ / 地域スケール / 全国スケール / 外来樹木 / シーケンス / 分布特性 / ニワウルシ / クローン繁殖 / 侵略的外来種 / ハプロタイプ / 葉緑体DNAシーケンス Less

Establishment of digital genome mapping method and its application to de novo genome analysis
- Principal Investigator
  
  浅川修一
- Project Period (FY)
  2023 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields
- Research Institution
  The University of Tokyo
Development of a method for the finding of small populations of trees
- Principal Investigator
  
  Saito Yoko
- Project Period (FY)
  2020 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 40010:Forest science-related
- Research Institution
  The University of Tokyo
Generation of a high-resolution genome map using haploid and hybrid organisms and its application to genetic analysis
- Principal Investigator
  
  Asakawa Shuichi
- Project Period (FY)
  2020 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields
- Research Institution
  The University of Tokyo
Matsutake "Shiro" revealed through amplicon sequencing analysisPrincipal Investigator
- Principal Investigator
  
  Kurokochi Hiroyuki
- Project Period (FY)
  2016 – 2019
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Environmental and ecological symbiosis
- Research Institution
  The University of Tokyo
Genetic structures of Quercus acutissima and Q. gilva, useful tree species in prehistoric times
- Principal Investigator
  
  SAITO Yoko
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Forest science
- Research Institution
  The University of Tokyo
Phylogeography and genetic conservation of Ulin ( Eusideroxylon zwageri), a tropical useful tree species.
- Principal Investigator
  
  IDE Yuji
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Forest science
- Research Institution
  The University of Tokyo
Study on the distribution and the population expansion of Ailanthus altissima, an alien tree species, in Japan.
- Principal Investigator
  
  SAITO Yoko
- Project Period (FY)
  2010 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Forest science
- Research Institution
  The University of Tokyo

All 2023 2022 2020 2018 2017 2015 2014 2013 2012 Other

All Journal Article Presentation

[Journal Article] Telomere-to-telomere genome assembly of matsutake (<i>Tricholoma matsutake</i>)2023
- Author(s)
  Kurokochi Hiroyuki、Tajima Naoyuki、Sato Mitsuhiko P、Yoshitake Kazutoshi、Asakawa Shuichi、Isobe Sachiko、Shirasawa Kenta
- Journal Title
  
  DNA Research
  
  Volume: 30 Issue: 3 Pages: 1-6
- DOI
  10.1093/dnares/dsad006
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-22H05181, KAKENHI-PROJECT-23H00342
[Journal Article] Telomere-to-telomere genome assembly of matsutake (<i>Tricholoma matsutake</i>)2022
- Author(s)
  Kurokochi Hiroyuki、Tajima Naoyuki、Sato Mitsuhiko P.、Yoshitake Kazutoshi、Asakawa Shuichi、Isobe Sachiko、Shirasawa Kenta
- Journal Title
  
  biorxiv
  
  Volume: 2022.07.25
- DOI
  10.1101/2022.07.25.501483
- Data Source
  KAKENHI-PROJECT-20H00429
[Journal Article] Bioactive properties of streptomyces may affect the dominance of Tricholoma matsutake in shiro2020
- Author(s)
  Vaario Lu-Min、Asamizu Shumpei、Sarjala Tytti、Matsushita Norihisa、Onaka Hiroyasu、Xia Yan、Kurokochi Hiroyuki、Morinaga Shin-Ichi、Huang Jian、Zhang Shijie、Lian Chunlan
- Journal Title
  
  Symbiosis
  
  Volume: 80 Issue: 1 Pages: 1-1
- DOI
  10.1007/s13199-020-00678-9
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H03824, KAKENHI-PROJECT-16K20964, KAKENHI-PROJECT-19K06150, KAKENHI-PROJECT-18K05385
[Journal Article] Change in Soil Temperature and Moisture Content After Removal of the A0 Layer in Pinus densiflora Forest: A Case Study of a Mountain Where Matsutake Mushrooms (Tricholoma matsutake) Grow2018
- Author(s)
  Hiroyuki Kurokochi1, Chunlan Lian
- Journal Title
  
  Current trends in Forest Research
  
  Volume: 2 Issue: 2 Pages: 1-8
- DOI
  10.29011/ctfr-111.100011
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K20964
[Journal Article] Local-Level Genetic Diversity and Structure of Matsutake Mushroom (Tricholoma matsutake) Populations in Nagano Prefecture, Japan, Revealed by 15 Microsatellite Markers2017
- Author(s)
  Kurokochi Hiroyuki、Zhang Shijie、Takeuchi Yoshie、Tan Engkong、Asakawa Shuichi、Lian Chunlan
- Journal Title
  
  Journal of Fungi
  
  Volume: 3 Issue: 2 Pages: 23-23
- DOI
  10.3390/jof3020023
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K20964
[Journal Article] Development of polymorphic chloroplast DNA markers for the endangered tree Eusideroxylon zwageri through chloroplast isolation and next-generation sequencing2015
- Author(s)
  Hiroyuki Kurokochi, I. L. G. Nurtjahjaningsih, Sukartiningsih, Engkong Tan, Shuichi Asakawa, Yoko Saito, Yuji Ide
- Journal Title
  
  Conservation Genet Resour
  
  Volume: 7 Issue: 4 Pages: 845-850
- DOI
  10.1007/s12686-015-0485-8
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25304025
[Journal Article] Genetic structure of Quercus gilva Blume in Japan as revealed by chloroplast DNA sequences2015
- Author(s)
  Nami Sugiura, Dingqin Tang, Hiroyuki Kurokochi, Yoko Saito, Yuji Ide
- Journal Title
  
  Botany
  
  Volume: 93 Issue: 12 Pages: 873-880
- DOI
  10.1139/cjb-2015-0025
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25450206
[Journal Article] Development of 16 microsatellite markers in Eusideroxylon　zwageri by next-generation sequencing2014
- Author(s)
  H Kurokochi, E Tan, S Asakawa ,Sukartiningsih, Y Saito and Y Ide
- Journal Title
  
  Conservation Genet Resour
  
  Volume: online Issue: 3 Pages: 593-595
- DOI
  10.1007/s12686-014-0148-1
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25304025
[Journal Article] Development of 13 polymorphic chloroplast DNA markers in Quercus gilva, a regionally endemic species in Japan2014
- Author(s)
  Nami Sugiura, Hiroyuki Kurokochi, Engkong Tan, Shuichi Asakawa, Naoki Sato, Yoko Saito, Yuji Ide
- Journal Title
  
  Conservation Genet Resour
  
  Volume: 6 Issue: 4 Pages: 961-965
- DOI
  10.1007/s12686-014-0256-y
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-25450206
[Journal Article] Low chloroplast diversity despite of phylogenetically divergent haplotypes in Japanese populations of Ailanthus altissima(Simaroubaceae)2013
- Author(s)
  Kurokochi, H., Saito, Y., Chuman, M., Ide, Y.
- Journal Title
  
  Botany
  
  Volume: 91 Pages: 148-154
- Data Source
  KAKENHI-PROJECT-22580157
[Journal Article] Low chloroplast diversity despite phylogenetically divergent haplotypes in Japanese populations of Ailanthus altissima (Simaroubaceae)2012
- Author(s)
  Hiroyuki Kurokochi, Yoko Saito, Yuji Ide
- Journal Title
  
  Botany
  
  Volume: 91 Issue: 3 Pages: 148-154
- DOI
  10.1139/cjb-2012-0159
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22580157
[Presentation] 水サンプルからの樹木DNAの検出ーイチイガシ、アサダ、イロハモミジー2022
- Author(s)
  黒河内寛之・萬代哲也・齊藤陽子
- Organizer
  第133回日本森林学会大会
- Data Source
  KAKENHI-PROJECT-20K06122
[Presentation] 国産マツタケの遺伝構造2020
- Author(s)
  黒河内寛之
- Organizer
  日本森林学会
- Data Source
  KAKENHI-PROJECT-16K20964
[Presentation] 長野県伊那市上牧里山シュンラン自生地における樹木と土壌微生物の種多様性2018
- Author(s)
  黒河内寛之1、伊那北小学校6年1組(2017年度)、伊那北小学校6年2組(2017年度)、大野田文吉、唐木隆夫、唐木敬吉、張仕傑、練春蘭
- Organizer
  第129回日本森林学会大会
- Data Source
  KAKENHI-PROJECT-16K20964
[Presentation] May Matsutake mycorrhiza-associated Streptomycetes distinguish friend and foe in shiro, the evidences from in vitro studies2018
- Author(s)
  Lu Min Vaario, Shumpei Asamizu, Norihisa Matsushita, Hiroyuki Kurokochi, Tytti Sarjala, Hiroyasu Onaka, Chunlan Lian
- Organizer
  3rd Conference on Ecology of Soil Microorganisms
- Data Source
  KAKENHI-PROJECT-16K20964
[Presentation] 長野県伊那市上牧里山シュンラン自生地における樹木と土壌微生物の種多様性2018
- Author(s)
  黒河内寛之ら
- Organizer
  日本森林学会
- Data Source
  KAKENHI-PROJECT-16K20964
[Presentation] Genotyping of Tricholoma matsutake from soil in Japanese red pine forest2017
- Author(s)
  Hiroyuki Kurokochi, Shijie Zhang, Pawara Pachit, Ruiyang Xu, Chunlan Lian
- Organizer
  第128回日本森林学会大会
- Place of Presentation
  鹿児島大学（鹿児島県鹿児島市）
- Data Source
  KAKENHI-PROJECT-16K20964
[Presentation] Marker deveropment using next generation sequencer2015
- Author(s)
  Hiroyuki Kurokochi
- Organizer
  International workshop on "Consevation of Borneo Ironwood（Eusideroxylon zwageri Teijsm. and Binn.）": Threat, Genetics and Challenges
- Place of Presentation
  Indonesia
- Year and Date
  2015-12-21
- Data Source
  KAKENHI-PROJECT-25304025
[Presentation] 日本における外来樹木ニワウルシの遺伝構造と分布拡大過程2013
- Author(s)
  黒河内寛之・齊藤陽子・中馬美咲・湯定欽・井出雄二
- Organizer
  第124回日本森林学会大会
- Place of Presentation
  岩手大学
- Data Source
  KAKENHI-PROJECT-22580157
[Presentation] 甲府盆地における外来樹木ニワウルシの遺伝構造2013
- Author(s)
  中馬美咲・黒河内寛之・齊藤陽子・井出雄二
- Organizer
  第124回日本森林学会大会
- Place of Presentation
  岩手大学
- Data Source
  KAKENHI-PROJECT-22580157
[Presentation] 「日本における外来樹木ニワウルシの遺伝構造と分布拡大過程」2013
- Author(s)
  黒河内寛之・齊藤陽子・中馬美咲・湯定欽・井出雄二
- Organizer
  第124回日本森林学会大会
- Place of Presentation
  岩手大学
- Data Source
  KAKENHI-PROJECT-22580157
[Presentation] Artificial-admixed chloroplast haplotypes of Ailanthus altissima, an introduced tree, in Japan.2012
- Author(s)
  Kurokochi H, Saito Y, Chuman M, Tang DQ, Ide Y
- Organizer
  59th Annual Meeting of Ecological Society of Japan
- Place of Presentation
  Otsu, Japan
- Data Source
  KAKENHI-PROJECT-22580157
[Presentation] Artificial-admixed chloroplast haplotypes of Ailanthus altissima, an introduced tree, in Japan2012
- Author(s)
  Kurokochi H, Saito Y, Chuman M, Tang DQ, Ide Y
- Organizer
  第5回東アジア生態学会連合大会(EAFES5)
- Place of Presentation
  滋賀
- Year and Date
  2012-03-19
- Data Source
  KAKENHI-PROJECT-22580157
[Presentation] 日本各地におけるニワウルシ植栽個体群および野生化個体群の遺伝的多様性2012
- Author(s)
  黒河内寛之・齊藤陽子・中馬美咲・井出雄二
- Organizer
  日本森林学会
- Place of Presentation
  宇都宮
- Year and Date
  2012-03-26
- Data Source
  KAKENHI-PROJECT-22580157
[Presentation] 個体間の血縁関係から推定した外来樹木ニワウルシの局所スケールにおける分布拡大過程2012
- Author(s)
  黒河内寛之・齊藤陽子・井出雄二
- Organizer
  第1回森林遺伝育種学会大会
- Place of Presentation
  東京大学
- Data Source
  KAKENHI-PROJECT-22580157
[Presentation] 日本各地におけるニワウルシ植栽個体群および野生化個体群の遺伝的多様性2012
- Author(s)
  黒河内寛之・齊藤陽子・中馬美咲・井出雄二
- Organizer
  第123回日本森林学会大会
- Place of Presentation
  宇都宮大学
- Data Source
  KAKENHI-PROJECT-22580157
[Presentation] Genetic diversity of Eusideroxylon zwageri (Teijsm. & Binn.) in Indonesia revealed by nuclear microsatellite markers
- Author(s)
  Ida Luh Gede Nurtjajah Ninsih・Sukartiningsih・黒河内寛之・齊藤陽子・井出雄二
- Organizer
  第126回日本森林学会
- Place of Presentation
  札幌
- Year and Date
  2015-03-26 – 2015-03-28
- Data Source
  KAKENHI-PROJECT-25304025

1. SAITO Yoko (00302597)

# of Collaborated Projects: 4 results

# of Collaborated Products: 0 results
2. IDE Yuji (90213024)

# of Collaborated Projects: 3 results

# of Collaborated Products: 15 results
3. Asakawa Shuichi (30231872)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
4. 稲野俊直 (50604609)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
5. 川村猛 (70306835)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. CHUMAN Misaki

# of Collaborated Projects: 1 results

# of Collaborated Products: 8 results
7. SHIRASAWA Kenta

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
8. LIAN Chunlan

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
9. 齊籐陽子

# of Collaborated Projects: 0 results

# of Collaborated Products: 16 results
10. 佐藤光彦

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
11. 松下範久

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
12. 森長真一

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

KUROKOCHI HIROYUKI 黒河内 寛之

KUROKOCHI Hiroyuki 黒河内 寛之

Research Projects

Research Products

Co-Researchers

Establishment of digital genome mapping method and its application to de novo genome analysis

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of a method for the finding of small populations of trees

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Generation of a high-resolution genome map using haploid and hybrid organisms and its application to genetic analysis

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Matsutake "Shiro" revealed through amplicon sequencing analysisPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Genetic structures of Quercus acutissima and Q. gilva, useful tree species in prehistoric times

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Phylogeography and genetic conservation of Ulin ( Eusideroxylon zwageri), a tropical useful tree species.

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Study on the distribution and the population expansion of Ailanthus altissima, an alien tree species, in Japan.

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Telomere-to-telomere genome assembly of matsutake (<i>Tricholoma matsutake</i>)2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Telomere-to-telomere genome assembly of matsutake (<i>Tricholoma matsutake</i>)2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Bioactive properties of streptomyces may affect the dominance of Tricholoma matsutake in shiro2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Change in Soil Temperature and Moisture Content After Removal of the A0 Layer in Pinus densiflora Forest: A Case Study of a Mountain Where Matsutake Mushrooms (Tricholoma matsutake) Grow2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Local-Level Genetic Diversity and Structure of Matsutake Mushroom (Tricholoma matsutake) Populations in Nagano Prefecture, Japan, Revealed by 15 Microsatellite Markers2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Development of polymorphic chloroplast DNA markers for the endangered tree Eusideroxylon zwageri through chloroplast isolation and next-generation sequencing2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Genetic structure of Quercus gilva Blume in Japan as revealed by chloroplast DNA sequences2015

Author(s)

Journal Title

KUROKOCHI HIROYUKI 黒河内寛之

KUROKOCHI Hiroyuki 黒河内寛之

[Journal Article] Development of 16 microsatellite markers in Eusideroxylon　zwageri by next-generation sequencing2014

[Presentation] 長野県伊那市上牧里山シュンラン自生地における樹木と土壌微生物の種多様性2018