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Kuroda Yutaka  黒田 裕

… Alternative Names

KURODA Yutaka  黒田 裕

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Researcher Number 10312240
Other IDs
  • ORCIDhttps://orcid.org/0000-0002-3221-4295
Affiliation (Current) 2025: 東京農工大学, 工学(系)研究科(研究院), 教授
Affiliation (based on the past Project Information) *help 2016 – 2022: 東京農工大学, 工学(系)研究科(研究院), 教授
2014 – 2016: 東京農工大学, 工学(系)研究科(研究院), 准教授
2011 – 2012: 東京農工大学, 工学(系)研究科(研究院), 准教授
2010 – 2012: 東京農工大学, 大学院・工学研究院, 准教授
2009: Tokyo University of Agriculture and Technology, 大学院・共生科学技術研究院, 准教授 … More
2007: Tokyo University of Agriculture and Technology, Institute of Symbiotic Science and Technology, Associate professor
2006: 東京農工大学, 大学院共生科学技術研究院, 助教授
2005: National University Corporation Tokyo University of Agriculture and Technology, Graduate School, Institute of Symbiotic Science and Technology, Associate Professor, 大学院・共生科学技術研究部, 助教授
2004: 国立大学法人東京農工大学, 大学院・共生科学技術研究部, 助教授 Less
Review Section/Research Field
Principal Investigator
Bioinformatics/Life informatics / Biophysics / Genome biology / Basic Section 43020:Structural biochemistry-related / Biophysics / Biomolecular chemistry / Living organism molecular science / Science and Engineering / Science and Engineering
Except Principal Investigator
Basic Section 27040:Biofunction and bioprocess engineering-related
Keywords
Principal Investigator
生物物理 / 溶解性制御タグ / デング / バイオテクノロジー / タンパク質 / タンパク質断片 / 免疫原性 / 組換えタンパク質 / 機械学習 / Strutural domain … More / 構造予測 / 構造ドメイン / 生物発光 / SEPタグ / 溶解度向上タグ / 蛋白質 / 構造安定性 / 凝集形成の分光計測 / アモルファス凝集 / 可溶性ペプチドタグ / 細胞毒性 / サポートベクターマシン / タンパク質ドメイン / 高速専用計算機 / 分子動力学シミュレーション / β構造 / 全原子 / 膵島アミロイドペプチド / バイオインフォマティクス / 会合性の制御 / 免疫増強 / コロナ / ウイルスタンパク質 / 免疫応答解析 / 生体分子 / 免疫学 / 抗原性 / computer aided / Large scale / Machine learning / Domain linkers / Support Vector Machine(SVM) / Domain boundary prediction / 機会学習 / コンピュータを用いた / 網羅的 / ドメインリンカー / SVM / ドメイン境界予測 / Ensemble learning / Support Vector Machine (SVM) / Neural Network / Protein structure prediction / Domain boundary / 集団学習 / サポートベクターマシン(SVM) / ニューラルネットワーク / 蛋白質構造予測 / ドメイン境界 / 溶菌 / VanX / ランダム変異 / 探索法 / SS結合 / 生物活性物質の探索 / 蛋白質工学 / 溶解度向上ペプチド系タグ / 天然状態 / 逆相HPLC / 可溶化タグ / 折り畳み / SS結合ミスマッチ / 回帰解析 / 蛋白質凝集 / ホスト・ゲスト法 / 単純化タンパク質 / 熱力学 / 溶解度測定 / 会合自由エネルギー / タンパク質凝集 / 変異体解析 / 熱力学解析 / シミュレーション / 蛋白質と水 / 溶解度 / 熱測定 / 蛋白質の折り畳み … More
Except Principal Investigator
メカノバイオロジー / ネスチン / 転写因子 / 転写制御 / ナノニードル / AFM / 中間径フィラメント Less
  • Research Projects

    (12 results)
  • Research Products

    (402 results)
  • Co-Researchers

    (12 People)
  •  Mechanical modulation of transcription with intermediate filament

    • Principal Investigator
      Nakamura Chikashi
    • Project Period (FY)
      2020 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 27040:Biofunction and bioprocess engineering-related
    • Research Institution
      Tokyo University of Agriculture and Technology
  •  Systematic mutational analysis of a relationship between a protein's immunogenicity and aggregation tendency using Solubility Conttroling Peptide (SCP) tagsPrincipal Investigator

    • Principal Investigator
      Kuroda Yutaka
    • Project Period (FY)
      2018 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 43020:Structural biochemistry-related
    • Research Institution
      Tokyo University of Agriculture and Technology
  •  ペプチドタグを用いたタンパク質のアモルファス凝集体の制御及びその細胞毒性の解析Principal Investigator

    • Principal Investigator
      黒田 裕
    • Project Period (FY)
      2017 – 2019
    • Research Category
      Grant-in-Aid for JSPS Fellows
    • Research Field
      Biophysics
    • Research Institution
      Tokyo University of Agriculture and Technology
  •  Analysis and modulation of protein immunogenicity using short Solubility Controlling Peptide tags (SCP tag)Principal Investigator

    • Principal Investigator
      Kuroda Yutaka
    • Project Period (FY)
      2015 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Biophysics
    • Research Institution
      Tokyo University of Agriculture and Technology
  •  神経ペプチドの体系的なデータベースの構築と機械学習法を用いたその構造傾向性の予測Principal Investigator

    • Principal Investigator
      黒田 裕
    • Project Period (FY)
      2015 – 2016
    • Research Category
      Grant-in-Aid for JSPS Fellows
    • Research Field
      Genome biology
    • Research Institution
      Tokyo University of Agriculture and Technology
  •  Screening of a minimal reporter protein with correct SS-bonds using a novel VanX mediated E-coli autolysis protocolPrincipal Investigator

    • Principal Investigator
      Kuroda Yutaka
    • Project Period (FY)
      2014 – 2015
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Biomolecular chemistry
    • Research Institution
      Tokyo University of Agriculture and Technology
  •  Novel screening protocol for multi-SS bond proteins using SEP tags and its application to the development of a minimal LuciferasePrincipal Investigator

    • Principal Investigator
      KURODA Yutaka
    • Project Period (FY)
      2011 – 2012
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Living organism molecular science
    • Research Institution
      Tokyo University of Agriculture and Technology
  •  少数のアミノ酸置換による蛋白質の主鎖構造の揺らぎの設計法の開発及びその効果の解析Principal Investigator

    • Principal Investigator
      黒田 裕
    • Project Period (FY)
      2009 – 2010
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Science and Engineering
    • Research Institution
      Tokyo University of Agriculture and Technology
  •  Development of a novel amino acid solubility propensity scale for the calculation of polypeptide solubilityPrincipal Investigator

    • Principal Investigator
      KURODA Yutaka
    • Project Period (FY)
      2009 – 2011
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Tokyo University of Agriculture and Technology
  •  Construction of a support vector machine (SVM) for accurately detecting domain boundariesPrincipal Investigator

    • Principal Investigator
      KURODA Yutaka
    • Project Period (FY)
      2006 – 2007
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Tokyo University of Agriculture and Technology
  •  アミノ酸配列単純化法を用いた蛋白質のフォールディング・溶解度を定量的に調べる研究Principal Investigator

    • Principal Investigator
      黒田 裕
    • Project Period (FY)
      2004 – 2005
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      Tokyo University of Agriculture and Technology
  •  Construction of a neural network for detecting novel domains from amino acid sequence information onlyPrincipal Investigator

    • Principal Investigator
      KURODA Yutaka
    • Project Period (FY)
      2004 – 2005
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      National University Corporation Tokyo University of Agriculture and Technology

All 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 2004 Other

All Journal Article Presentation Book Patent

  • [Book] 「溶解性制御ペプチドタグを用いた蛋白質のアモルファス凝集の物理化学的解析とその免疫原性増強効果」月刊「細胞」8月号2021

    • Author(s)
      黒田 裕
    • Total Pages
      4
    • Publisher
      ニューサイエンス社
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Book] タンパク質のアモルファス凝集と溶解性―基礎研究からバイオ産業・創薬研究への応用まで―2019

    • Author(s)
      黒田 裕、有坂 文雄(監修)
    • Total Pages
      283
    • Publisher
      シーエムシー出版
    • ISBN
      9784781313979
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Book] 化学工業「タンパク質表面電荷が溶解性に及ぼす影響の格子モデル解析」2019

    • Author(s)
      小原 真、黒田 裕
    • Publisher
      化学工業社
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Book] 物理化学で用いられる量・単位・記号要約版2011

    • Author(s)
      朽津耕三、黒田裕、志田忠正
    • Total Pages
      11
    • Publisher
      グリーンブック要約版・訳書作成委員会
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Book] 邦訳:「物理化学で用いられる量・単位・記号要約版2010

    • Author(s)
      朽津耕三、黒田裕、志田忠正
    • Total Pages
      11
    • Publisher
      日本化学会 グリーンブック要約版・訳書作成委員会
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Book] 邦訳:「物理化学で用いられる量・単位・記号要約版2010

    • Author(s)
      朽津耕三、黒田裕、志田忠正
    • Total Pages
      11
    • Publisher
      日本化学会グリーンブック要約版・訳書作成委員会
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Book] 生物物理48(3)「タンパク質溶解性向上技術〜SEP-tagについて〜」2008

    • Author(s)
      加藤淳、泉川直重、黒田裕
    • Publisher
      生物物理
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Book] タンパク質溶解性向上技術〜SEP-tagについて〜2008

    • Author(s)
      加藤淳、泉川直重、黒田裕
    • Total Pages
      48
    • Publisher
      生物物理
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Book] タンパク質の人工設計:「生物物理ハンドブック」石渡信一、桂勲、桐野豊、美宅成樹 編集2007

    • Author(s)
      黒田裕
    • Publisher
      朝倉書店
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Book] タンパク質の人工設計 : 「生物物理ハンドブック」(石渡信一, 桂勲, 桐野豊, 美宅成樹 編集)2007

    • Author(s)
      黒田裕
    • Total Pages
      680
    • Publisher
      朝倉書店
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Book] バイオインフォマティクス事典、(日本バイオインフォマティクス学会<JSBi学会>編集)2006

    • Author(s)
      黒田裕
    • Total Pages
      805
    • Publisher
      共立出版
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Book] 生物物理ハンドブック(石渡信一、桂勲、桐野豊、美宅成樹 編)2006

    • Author(s)
      黒田裕
    • Publisher
      朝倉書店(出版予定)
    • Data Source
      KAKENHI-PROJECT-16041247
  • [Book] 生物物理ハンドブック(石渡信一, 桂勲, 桐野豊, 美宅成樹 編)2006

    • Author(s)
      黒田裕
    • Publisher
      朝倉書店
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Book] バイオインフォマティクス事典、日本バイオインフォマティクス学2006

    • Author(s)
      黒田裕
    • Total Pages
      834
    • Publisher
      共立出版
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Book] 生物物理ハンドブック(石渡信一、桂勲、桐野豊、美宅成樹編)2006

    • Author(s)
      黒田裕
    • Publisher
      朝倉書店(出版予定)
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Book] 計算手法を用いて見るタンパク質立体構造概論東京大学 バイオインフォマティクス集中講義(高木 利久(監修))2004

    • Author(s)
      黒田裕, 横山茂之
    • Total Pages
      140
    • Publisher
      洋土社
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Book] 計算手法を用いて見るタンパク質立体構造概論「東京大学バイオインフォマティクス集中講義」(高木利久(監修))2004

    • Author(s)
      黒田裕, 横山茂之
    • Publisher
      羊土社
    • Data Source
      KAKENHI-PROJECT-16041247
  • [Book] 計算手法を用いて見るタンパク質立体構造概論東京大学「バイオインフォマティクス集中講義」(高木利久(監修))2004

    • Author(s)
      黒田裕, 横山茂之
    • Total Pages
      68
    • Publisher
      羊土社
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Book] Bioinformatics Handbook (Edited by Japanese Bioinformatics Society) (Editor Miyuano S. et al.)

    • Author(s)
      Y.Kuroda
    • Publisher
      Kyoritsu Shuppan (contribution to)
    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Journal Article] Blocking PSD95‐PDZ3's amyloidogenesis through point mutations that inhibit high‐temperature reversible oligomerization (RO)2022

    • Author(s)
      Saotome Tomonori、Onchaiya Sawaros、Brindha Subbaian、Mezaki Taichi、Unzai Satoru、Noguchi Keiichi、Martinez Jose C.、Kidokoro Shun‐ichi、Kuroda Yutaka
    • Journal Title

      The FEBS Journal

      Volume: 2021 Issue: 11 Pages: 1-12

    • DOI

      10.1111/febs.16339

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-21K05288, KAKENHI-PROJECT-21K15049, KAKENHI-PROJECT-18H02385
  • [Journal Article] A Multi-Disulfide Receptor-Binding Domain (RBD) of the SARS-CoV-2 Spike Protein Expressed in E. coli Using a SEP-Tag Produces Antisera Interacting with the Mammalian Cell Expressed Spike (S1) Protein2022

    • Author(s)
      Brindha Subbaian、Kuroda Yutaka
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 23 Issue: 3 Pages: 1703-1703

    • DOI

      10.3390/ijms23031703

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] Solubility Controlling Peptide Tags of Opposite Charges Generate a Bivalent Immune Response Against Dengue ED3 Serotypes 3 and 42021

    • Author(s)
      Rahman Nafsoon、Miura Shiho、Okawa Mami、Kibria Md. Golam、Islam Mohammad Monirul、Kuroda Yutaka
    • Journal Title

      Frontiers in Immunology

      Volume: 12 Pages: 671590-671590

    • DOI

      10.3389/fimmu.2021.671590

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] Stochastic modelling of the effects of human-mobility restriction and viral infection characteristics on the spread of COVID-192021

    • Author(s)
      Ando Shiho、Matsuzawa Yuki、Tsurui Hiromichi、Mizutani Tetsuya、Hall Damien、Kuroda Yutaka
    • Journal Title

      Scientific Reports

      Volume: 11(1) Issue: 1 Pages: 6856-6856

    • DOI

      10.1038/s41598-021-86027-2

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] EGFR extracellular domain III expressed in Escherichia coli with SEP tag shows improved biophysical and functional properties and generate anti-sera inhibiting cancer cell growth2021

    • Author(s)
      Brindha Subbaian、Kibria Md. Golam、Saotome Tomonori、Unzai Satoru、Kuroda Yutaka
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 555 Pages: 121-127

    • DOI

      10.1016/j.bbrc.2021.03.102

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] Assessment of prediction methods for protein structures determined by NMR in CASP14: Impact of AlphaFold22021

    • Author(s)
      Huang Yuanpeng Janet、Zhang Ning、Bersch Beate、Fidelis Krzysztof、Inouye Masayori、Ishida Yojiro、Kryshtafovych Andriy、Kobayashi Naohiro、Kuroda Yutaka、Liu Gaohua、LiWang Andy、Swapna G.V.T、Wu Nan、Yamazaki Toshio、Montelione Gaetano T.
    • Journal Title

      Proteins: Structure, Function, and Bioinformatics

      Volume: 89(12) Issue: 12 Pages: 1959-1976

    • DOI

      10.1002/prot.26246

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] Anti-EGFR VHH Antibody under Thermal Stress Is Better Solubilized with a Lysine than with an Arginine SEP Tag2021

    • Author(s)
      Kibria Md. Golam、Fukutani Akari、Akazawa-Ogawa Yoko、Hagihara Yoshihisa、Kuroda Yutaka
    • Journal Title

      Biomolecules

      Volume: 11(6) Issue: 6 Pages: 810-810

    • DOI

      10.3390/biom11060810

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] Immune response with long-term memory triggered by amorphous aggregates of misfolded anti-EGFR VHH-7D12 is directed against the native VHH-7D12 as well as the framework of the analogous VHH-9G82021

    • Author(s)
      Golam Kibria Md.、Akazawa-Ogawa Yoko、Hagihara Yoshihisa、Kuroda Yutaka
    • Journal Title

      European Journal of Pharmaceutics and Biopharmaceutics

      Volume: 165 Pages: 13-21

    • DOI

      10.1016/j.ejpb.2021.05.004

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] Nanometer-Sized Aggregates Generated Using Short Solubility Controlling Peptide Tags Do Increase the In Vivo Immunogenicity of a Nonimmunogenic Protein2020

    • Author(s)
      Rahman Nafsoon、Islam Mohammad Monirul、Unzai Satoru、Miura Shiho、Kuroda Yutaka
    • Journal Title

      Molecular Pharmaceutics

      Volume: 17(5) Issue: 5 Pages: 1629-1637

    • DOI

      10.1021/acs.molpharmaceut.0c00071

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] Thermodynamic Analysis of Point Mutations Inhibiting High-Temperature Reversible Oligomerization of PDZ32020

    • Author(s)
      Saotome Tomonori、Mezaki Taichi、Brindha Subbaian、Unzai Satoru、Martinez Jose C.、Kidokoro Shun-ichi、Kuroda Yutaka
    • Journal Title

      Biophysical Journal

      Volume: 119(7) Issue: 7 Pages: 1391-1401

    • DOI

      10.1016/j.bpj.2020.08.023

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] How A Novel Scientific Concept Was Coined the “Molten Globule State”2020

    • Author(s)
      Kuroda Yutaka、Endo Shigeru、Nakamura Haruki
    • Journal Title

      Biomolecules

      Volume: 10 Issue: 2 Pages: 269-269

    • DOI

      10.3390/biom10020269

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] Anti-Dengue ED3 Long-Term Immune Response With T-Cell Memory Generated Using Solubility Controlling Peptide Tags2020

    • Author(s)
      Islam Mohammad M.、Miura Shiho、Hasan Mohammad N.、Rahman Nafsoon、Kuroda Yutaka
    • Journal Title

      Frontiers in Immunology

      Volume: 11 Pages: 333-333

    • DOI

      10.3389/fimmu.2020.00333

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] Reversible oligomerization and reverse hydrophobic effect induced by isoleucine tags attached at the C-terminus of a simplified BPTI variant2020

    • Author(s)
      Shigeyoshi Nakamura, MD. Golam Kibria, Satoru Unzai, Yutaka Kuroda, Shun-ichi Kidokoro
    • Journal Title

      Biochemistry

      Volume: 59 Issue: 39 Pages: 3660-3668

    • DOI

      10.1021/acs.biochem.0c00436

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K02950, KAKENHI-PROJECT-18H02385
  • [Journal Article] The immunogenicity of an anti-EGFR single domain antibody (VHH) is enhanced by misfolded amorphous aggregation but not by heat-induced aggregation2020

    • Author(s)
      Kibria Md. Golam、Akazawa-Ogawa Yoko、Rahman Nafsoon、Hagihara Yoshihisa、Kuroda Yutaka
    • Journal Title

      European Journal of Pharmaceutics and Biopharmaceutics

      Volume: 152 Pages: 164-174

    • DOI

      10.1016/j.ejpb.2020.05.006

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] A systematic mutational analysis identifies a 5‐residue proline tag that enhances the in vivo immunogenicity of a non‐immunogenic model protein2020

    • Author(s)
      Rahman Nafsoon、Islam Mohammad Monirul、Kibria Md. Golam、Unzai Satoru、Kuroda Yutaka
    • Journal Title

      FEBS Open Bio

      Volume: 10(10) Issue: 10 Pages: 1947-1956

    • DOI

      10.1002/2211-5463.12941

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] Solution structure of Gaussia Luciferase with five disulfide bonds and identification of a putative coelenterazine binding cavity by heteronuclear NMR.2020

    • Author(s)
      N. Wu, N. Kobayashi, K. Tsuda, S. Unzai, T. Saotome, Y. Kuroda and T. Yamazaki.
    • Journal Title

      Sci. Rep.

      Volume: 10 Issue: 1 Pages: 20069-20069

    • DOI

      10.1038/s41598-020-76486-4

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K06152, KAKENHI-PROJECT-18H02385
  • [Journal Article] Design and assessment of an active anti-epidermal growth factor receptor (EGFR) single chain variable fragment (ScFv) with improved solubility2019

    • Author(s)
      Nautiyal Kalpana、Kibria Md Golam、Akazawa-Ogawa Yoko、Hagihara Yoshihisa、Kuroda Yutaka
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 508(4) Issue: 4 Pages: 1043-1049

    • DOI

      10.1016/j.bbrc.2018.11.170

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] A novel caged Cookson‐type reagent toward a practical vitamin D derivatization method for mass spectrometric analyses2019

    • Author(s)
      Seki Masahiko、Sato Makoto、Takiwaki Masaki、Takahashi Koji、Kikutani Yoshikuni、Satoh Mamoru、Nomura Fumio、Kuroda Yutaka、Fukuzawa Seketsu
    • Journal Title

      Rapid Communications in Mass Spectrometry

      Volume: 34 Issue: 7

    • DOI

      10.1002/rcm.8648

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H02385, KAKENHI-PROJECT-17KT0124, KAKENHI-PROJECT-18K07462
  • [Journal Article] Hydrophobic surface residues can stabilize a protein through improved water?protein interactions2019

    • Author(s)
      Islam Mohammad M.、Kobayashi Kei、Kidokoro Shun‐Ichi、Kuroda Yutaka
    • Journal Title

      The FEBS Journal

      Volume: 286(20) Issue: 20 Pages: 4122-4134

    • DOI

      10.1111/febs.14941

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02385, KAKENHI-PROJECT-17K05926
  • [Journal Article] Large-scale all-atom molecular dynamics alanine-scanning of IAPP octapeptides provides insights into the molecular determinants of amyloidogenicity2019

    • Author(s)
      Tambi Richa、Morimoto Gentaro、Kosuda Satoshi、Taiji Makoto、Kuroda Yutaka
    • Journal Title

      Scientific Reports

      Volume: 9(1) Issue: 1 Pages: 2530-2530

    • DOI

      10.1038/s41598-018-38401-w

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] Folding of the Ig-like domain of the envelope protein from dengue virus analyzed by high hydrostatic pressure NMR at a residue-level resolution2019

    • Author(s)
      Saotome Tomonori, Doret Maxime, Kulkarni R Manjiri, Yang Yin-Shan, Barthe Philippe, Kuroda Yutaka, Roumestand Christian
    • Journal Title

      Biomolecules

      Volume: 9(8) Issue: 8 Pages: 309-309

    • DOI

      10.3390/biom9080309

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Journal Article] Misfolding of a Single Disulfide Bonded Globular Protein into a Low-Solubility Species Conformationally and Biophysically Distinct from the Native One2019

    • Author(s)
      Saotome Tomonori、Yamazaki Toshio、Kuroda Yutaka
    • Journal Title

      Biomolecules

      Volume: 9(6) Issue: 6 Pages: 250-250

    • DOI

      10.3390/biom9060250

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H02385, KAKENHI-PROJECT-17F17392
  • [Journal Article] Reversible association of proteins into sub-visible amorphous aggregates using short solubility controlling peptide tags2018

    • Author(s)
      Kabir Md. Golam、Islam Mohammad Monirul、Kuroda Yutaka
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

      Volume: 1866(2) Issue: 2 Pages: 366-372

    • DOI

      10.1016/j.bbapap.2017.09.012

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Journal Article] A SEP tag enhances the expression, solubility and yield of recombinant TEV protease without altering its activity2018

    • Author(s)
      Nautiyal Kalpana、Kuroda Yutaka
    • Journal Title

      New Biotechnology

      Volume: 42 Pages: 77-84

    • DOI

      10.1016/j.nbt.2018.02.006

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Journal Article] Biophysical studies of protein solubility and amorphous aggregation by systematic mutational analysis and a helical polymerization model2018

    • Author(s)
      Kuroda Yutaka
    • Journal Title

      Biophysical Reviews

      Volume: 10(2) Issue: 2 Pages: 473-480

    • DOI

      10.1007/s12551-017-0342-y

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Journal Article] A hetero-micro-seeding strategy for readily crystallizing closely related protein variants2017

    • Author(s)
      Islam Mohammad M.、Kuroda Yutaka
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 493(1) Issue: 1 Pages: 504-508

    • DOI

      10.1016/j.bbrc.2017.08.161

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Journal Article] Fast H-DROP: A thirty times accelerated version of H-DROP for interactive SVM-based prediction of helical domain linkers2017

    • Author(s)
      Richa Tambi, Shoichi Ide, Teppei Ebina, Yutaka Kuroda
    • Journal Title

      Journal of Computer-Aided Molecular Design

      Volume: 31(2) Issue: 2 Pages: 237-244

    • DOI

      10.1007/s10822-016-9999-8

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-15F15080, KAKENHI-PROJECT-15H04359
  • [Journal Article] Crystal structures of highly simplified BPTIs provide insights into hydration-driven increase of unfolding enthalpy2017

    • Author(s)
      M. M. Islam, M. Yohda, S. I. Kidokoro, Y. Kuroda
    • Journal Title

      Sci. Rep.

      Volume: 7 Issue: 1 Pages: 41205-41205

    • DOI

      10.1038/srep41205

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-16H00753, KAKENHI-PROJECT-16H04572, KAKENHI-PROJECT-15H04359
  • [Journal Article] Thermodynamics of the Thermal Denaturation of Acid Molten Globule State of Cytochrome c Indicate a Reversible High-Temperature Oligomerization Process2017

    • Author(s)
      Nakamura Shigeyoshi、Saotome Tomonori、Nakazawa Akiko、Fukuda Masao、Kuroda Yutaka、Kidokoro Shun-ichi
    • Journal Title

      Biochemistry

      Volume: 56(18) Issue: 18 Pages: 2372-2378

    • DOI

      10.1021/acs.biochem.6b01225

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Journal Article] All-atom molecular dynamics analysis of multi-peptide systems reproduces peptide solubility in line with experimental observations2016

    • Author(s)
      Yutaka Kuroda, Atsushi Suenaga, Yuji Sato, Satoshi Kosuda, Makoto Taiji
    • Journal Title

      Scientific Reports 6

      Volume: 6 Issue: 1 Pages: 19479-19479

    • DOI

      10.1038/srep19479

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-15F15080, KAKENHI-PROJECT-15H04359
  • [Journal Article] Modeling and experimental assessment of a buried Leu-Ile mutation in Dengue envelope protein domain III2016

    • Author(s)
      Kulkarni R Manjiri, Numoto Nobutaka, Ito Nobutoshi, Kuroda Yutaka
    • Journal Title

      Biochemical and Biophysical research Communications

      Volume: 471(1) Issue: 1 Pages: 163-168

    • DOI

      10.1016/j.bbrc.2016.01.159

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Journal Article] A novel screening system based on VanX mediated autolysis - application to Gaussia luciferase2016

    • Author(s)
      Wu Nan, Kamioka Tetsuya, Kuroda Yutaka
    • Journal Title

      Biotechnol Bioeng

      Volume: 印刷中 Issue: 7 Pages: 1413-1420

    • DOI

      10.1002/bit.25910

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-26560432, KAKENHI-PROJECT-15H04359
  • [Journal Article] Unusual Reversible Oligomerization of Unfolded Dengue Envelope Protein Domain 3 at High Temperatures and Its Abolition by a Point Mutation2016

    • Author(s)
      Saotome Tomonori、Nakamura Shigeyoshi、Islam Mohammad M.、Nakazawa Akiko、Dellarole Mariano、Arisaka Fumio、Kidokoro Shun-ichi、Kuroda Yutaka
    • Journal Title

      Biochemistry

      Volume: 55(32) Issue: 32 Pages: 4469-4475

    • DOI

      10.1021/acs.biochem.6b00431

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Journal Article] Amorphous protein aggregation monitored using fluorescence self-quenching2016

    • Author(s)
      Hiroki Jozawa, Golam M Kabir, Tamotsu Zako, Mizuo Maeda, Kazuhiro Chiba, Yutaka Kuroda
    • Journal Title

      FEBS Lett.

      Volume: 590(20) Issue: 20 Pages: 3501-3509

    • DOI

      10.1002/1873-3468.12439

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-15F15080, KAKENHI-PROJECT-15H04359
  • [Journal Article] Plant-PrAS: A database of physicochemical and structural properties, and novel functional regions in plant proteomes2015

    • Author(s)
      Atsushi Kurotani, Yutaka Yamada, Kazuo Shinozaki, Yutaka Kuroda, and Tetsuya Sakurai
    • Journal Title

      Plant and Cell Physiology

      Volume: 56(1) Issue: 1 Pages: e11-e11

    • DOI

      10.1093/pcp/pcu176

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Journal Article] Bacterial expression and re-engineering of Gaussia princeps luciferase and its use as a reporter protein2015

    • Author(s)
      Wu Nan, Rathnayaka Tharangani, Kuroda Yutaka
    • Journal Title

      Biochim Biophys Acta

      Volume: 1854 Issue: 10 Pages: 1392-9

    • DOI

      10.1016/j.bbapap.2015.05.008

    • Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26560432, KAKENHI-PROJECT-15H04359
  • [Journal Article] 光セルフクエンチを用いたアモルファス凝集形成機構の解析2015

    • Author(s)
      如澤浩樹, 座古保, 前田瑞夫, 千葉一裕, 黒田裕
    • Journal Title

      月刊「バイオインダストリー」

      Volume: 9月号 Pages: 36-41

    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Journal Article] 蛍光セルフクエンチを用いたアモルファス凝集形成機構の解析2015

    • Author(s)
      如澤浩樹, 座古保, 前田瑞夫, 千葉一裕, 黒田裕
    • Journal Title

      月刊バイオインダストリー(シーエムシー出版)

      Volume: 9月号 Pages: 36-41

    • Data Source
      KAKENHI-PROJECT-26560432
  • [Journal Article] Analysis and control of protein crystallization using short peptide tags that change solubility without structure, thermal stability and function2015

    • Author(s)
      Islam M, Nakamura S, Noguchi K, Yohda M, Kidokoro S, Kuroda Y
    • Journal Title

      Crystal Growth Design

      Volume: 15 Issue: 6 Pages: 2703-2711

    • DOI

      10.1021/acs.cgd.5b00010

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25400426, KAKENHI-PROJECT-26560432, KAKENHI-PROJECT-15H04359
  • [Journal Article] Structural and biophysical analysis of sero-specific immune responses using epitope grafted Dengue ED3 mutants2015

    • Author(s)
      Kulkarni R Manjiri, Islam M Mohammad, Numoto Nobutaka, Elahi Montasir, Mahib R Mamunur, Ito Nobutoshi, Kuroda Yutaka
    • Journal Title

      Biochim Biophys Acta

      Volume: 1854 Issue: 10 Pages: 1438-43

    • DOI

      10.1016/j.bbapap.2015.07.004

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26560432, KAKENHI-PROJECT-15H04359
  • [Journal Article] Biochemical and biophysical characterization of an unexpected bacteriolysis activity of VanX- a member of the vancomycin-resistance vanA gene cluster-2014

    • Author(s)
      Shihori Sohya, Tetsuya Kamioka, Chisako Fujita, Tei Maki, Yoshihiro Ohta, and Yutaka Kuroda
    • Journal Title

      J Biol, Chem

      Volume: 289(52) Issue: 52 Pages: 35686-35694

    • DOI

      10.1074/jbc.m114.590265

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Journal Article] H-DROP: an SVM based helical domain linker predictor trained with features optimized by combining random forest and stepwise selection2014

    • Author(s)
      Teppei Ebina, Suzuki Ryosuke, Ryotaro Tsuji, Yutaka Kuroda
    • Journal Title

      J Comput Aided Mol Des

      Volume: 28(8) Issue: 8 Pages: 831-839

    • DOI

      10.1007/s10822-014-9763-x

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Journal Article] Correlations between protein disorder and post-translational modifications in plants2014

    • Author(s)
      3. Kurotani A, Tokmakov AA, Kuroda Y, Fukami Y, Shinozaki K, Sakurai T.
    • Journal Title

      Bioinformatics

      Volume: v. 30 Issue: 8 Pages: 1095-1103

    • DOI

      10.1093/bioinformatics/btt762

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-25440023, KAKENHI-PROJECT-26560432
  • [Journal Article] Probing the physical determinants of thermal expansion of folded proteins2013

    • Author(s)
      Dellarole M, Kobayashi K, Rouget JB, Caro A, Roche J, Islam MM,Garcia-Moreno BE, Kuroda Y, Royer CA
    • Journal Title

      J Phys Chem B

      Volume: (in press)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Journal Article] High resolution crystal structure of dengue-3 envelope protein domain III suggests possible molecular mechanisms for serospecific antibody recognition2013

    • Author(s)
      Elahi M, Islam M M, Noguchi K, Yohda M, Kuroda Y
    • Journal Title

      Proteins

      Volume: 81(6) Issue: 6 Pages: 1090-1095

    • DOI

      10.1002/prot.24237

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Journal Article] Extraction of Recombinant Protein from E.coli by Using a Novel Cell Autolysis Activity of VanX2013

    • Author(s)
      Kamioka T, Sohya S, Wu N, Maki T, Matsuda T, Ikegami T, Nakamura H, Kuroda Y
    • Journal Title

      Analytical Biochemistry

      Volume: in press

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Journal Article] Extraction of recombinantprotein from E.coli by using a novel cell autolysis activity of VanX2013

    • Author(s)
      Kamioka T, Sohya S, Wu N, Maki T, Matsuda T, Ikegami T, Nakamura H, Kuroda Y
    • Journal Title

      Analytical Biochemistry

      Volume: (in press) Issue: 2 Pages: 212-217

    • DOI

      10.1016/j.ab.2013.04.007

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23651213, KAKENHI-PROJECT-25440069
  • [Journal Article] Experimental identification and theoretical analysis of a thermallystabilized green fluorescent protein variant2012

    • Author(s)
      Akiyama S, Suenaga A, Kobayashi T, Kamioka T, Taiji M, Kuroda Y
    • Journal Title

      Biochemistry

      Volume: 51(40) Issue: 40 Pages: 7974-7982

    • DOI

      10.1021/bi300580j

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Journal Article] Analysis of amino acid contributions to protein solubility using short peptide tags fused to a simplified BPTI variant2012

    • Author(s)
      Islam M M, Khan M M A, Kuroda Y
    • Journal Title

      BBA Proteins and Proteomics

      Volume: 1824(10) Issue: 10 Pages: 1144-1150

    • DOI

      10.1016/j.bbapap.2012.06.005

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Journal Article] VanXの溶菌活性の解明と菌体内生産物の精製工程の簡略化2011

    • Author(s)
      黒田裕、上岡哲矢、惣谷志保里
    • Journal Title

      未来材料

      Volume: 11(7) Pages: 32-36

    • Data Source
      KAKENHI-PROJECT-23651213
  • [Journal Article] DROP : an SVM domain linker predictor trained with optimal features selected by random forest2011

    • Author(s)
      Ebina Teppei, Toh Hiroyuki, Kuroda Yutaka
    • Journal Title

      Bioinformatics

      Volume: 27(4) Pages: 487-494

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Journal Article] Solubilization and folding of a fully active recombinant Gaussia luciferase with native disulfide bonds by using a SEP-tag2011

    • Author(s)
      Rathnayaka T, Tawa M, Nakamura T, SohyaS, Kuwajima K, Yohda M, Kuroda Y
    • Journal Title

      Biochim Biophys Acta. Proteins and Proteomics

      Volume: 1814(12) Issue: 12 Pages: 1775-1778

    • DOI

      10.1016/j.bbapap.2011.09.001

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110, KAKENHI-PROJECT-21370067, KAKENHI-PUBLICLY-22020011, KAKENHI-PROJECT-23651213
  • [Journal Article] VanXの溶菌活性の解明と菌体内生産物の精製工程の簡略化2011

    • Author(s)
      黒田裕、上岡哲也、惣谷志保里
    • Journal Title

      未来材料

      Volume: 11(7) Pages: 32-36

    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] DROP : an SVM domain linker predictor trained with optimal features selected by random forest2011

    • Author(s)
      Ebina T, Toh H, Kuroda Y
    • Journal Title

      Bioinformatics

      Volume: 27(4) Issue: 4 Pages: 487-494

    • DOI

      10.1093/bioinformatics/btq700

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] ジュネーブ・Swiss-Protグループの紹介2010

    • Author(s)
      黒田裕, Lieberherr Damien
    • Journal Title

      生物物理

      Volume: 50(5) Pages: 252-253

    • NAID

      10026670731

    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Journal Article] Mathematical Model for Empirically Optimizing Large Scale Production of Soluble Protein Domains2010

    • Author(s)
      Eisuke Chikayama, Atsushi Kurodani, Takanori Tanaka, Takashi Yabuki, Satoshi Miyazaki, Shigeyuki Yokoyama, Yutaka Kuroda
    • Journal Title

      BMC Bioinformatics

      Volume: 11 Pages: 113-113

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] ジュネーブ・Swiss-Protグループの紹介2010

    • Author(s)
      黒田裕, Lieberherr Damien
    • Journal Title

      生物物理

      Volume: 50(5) Pages: 252-253

    • NAID

      10026670731

    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] Mathematical Model for Empirically Optimizing Large Scale Production of Soluble Protein Domains2010

    • Author(s)
      Eisuke Chikayama, Atsushi Kurodani, Takanori Tanaka, Takashi Yabuki, Satoshi Miyazaki, Shigeyuki Yokoyama, Yutaka Kuroda
    • Journal Title

      BMC Bioinformatics

      Volume: 11 Pages: 113-113

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Journal Article] Prediction of protein motions from amino acid sequence and its application to protein-protein interaction2010

    • Author(s)
      Shuichi Hirose, Kiyonobu Yokota, Yutaka Kuroda, Hiroshi Wako, Shigeru Endo, Satoru Kanai, Tamotsu Noguchi
    • Journal Title

      BMC Structural Biology

      Volume: 10 Pages: 20-20

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] Mathematical Model for Empirically Optimizing Large Scale Production of Soluble Protein Domains2010

    • Author(s)
      Chikayama E, Kurotani A, Tanaka T, Yabuki T, Miyazaki S, Yokoyama S, Kuroda Y
    • Journal Title

      BMC Bioinformatics 11

      Pages: 113-113

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] Prediction of protein motions from amino acid sequence and its application to protein-protein interaction2010

    • Author(s)
      Shuichi Hirose, Kiyonobu Yokota, Yutaka Kuroda, Hiroshi Wako, Shigeru Endo, Satoru Kanai, Tamotsu Noguchi
    • Journal Title

      BMC Structural Biology

      Volume: 10 Pages: 20-20

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Journal Article] Biophysical characterization of highly active recombinant Gaussia luciferase expressed in Escherichia coli2010

    • Author(s)
      Rathnayaka Tharangani, Tawa Minako, Sohya Shihori, Yohda Masafumi, Kuroda Yutaka
    • Journal Title

      Biochim Biophys Acta

      Volume: 1804(9) Pages: 1902-1907

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] Biophysical characteriza-tion of highly active recombinant Gaussia luciferase expressed in Escherichia coli2010

    • Author(s)
      Rathnayaka T, Tawa M, Sohya S, Yohda M, Kuroda Y
    • Journal Title

      Biochim Biophys Acta

      Volume: 1804(9) Pages: 1902-1907

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] Mathematical Model for Empirically Optimizing Large Scale Production of Soluble Protein Domains2010

    • Author(s)
      Chikayama E, Kurotani A, Tanaka T, Yabuki T, Miyazaki S, Yokoyama S, Kuroda Y
    • Journal Title

      BMC Bioinformatics

      Volume: 11 Issue: 1 Pages: 113-113

    • DOI

      10.1186/1471-2105-11-113

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] Mathematical Model for Empirically Optimizing Large Scale Production of Soluble Protein Domains2010

    • Author(s)
      Chikayama Eisuke, Kurotani Atsushi, Tanaka Takanori, Yabuki Takashi, Miyazaki Satoshi, Yokoyama Shigeyuki, Kuroda Yutaka
    • Journal Title

      BMC Bioinformatics 11

      Pages: 113-113

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Journal Article] Prediction of protein motions from amino acid sequence and its application to protein-protein interaction2010

    • Author(s)
      Hirose S, Yokota K, Kuroda Y, Wako H, Endo S, Kanai S, Noguchi T
    • Journal Title

      BMC Structural Biology

      Volume: 10 Issue: 1 Pages: 20-20

    • DOI

      10.1186/1472-6807-10-20

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] Biophysical characterization of highly active recombinant Gaussia luciferase expressed in Escherichia coli2010

    • Author(s)
      Rathnayaka Tharangani, Tawa Minako, Sohya Shihori, Yohda Masafumi, Kuroda Yutaka
    • Journal Title

      Biochim Biophys Acta

      Volume: 1804(9) Pages: 1902-1907

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Journal Article] Loop-length dependent SVM prediction of domain linkers for high-throughput structural proteomics2009

    • Author(s)
      Ebina Teppei, Toh Hiroyuki, Kuroda Yutaka
    • Journal Title

      Biopolymers 92

      Pages: 1-8

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Journal Article] Improved protein splicing reaction for low solubility protein fragments without insertion of native extein residues(NERs)2009

    • Author(s)
      Kamioka T, Tawa M, Sohya S, Yamazaki T, Kuroda
    • Journal Title

      Biopolymers(Peptide Science)

      Volume: 92(5) Issue: 5 Pages: 465-470

    • DOI

      10.1002/bip.21261

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] Loop-length dependent SVM prediction of domain linkers for high-throughout structural proteomics2009

    • Author(s)
      Ebina T, Toh H, Kuroda Y
    • Journal Title

      Biopolymers 92

      Pages: 1-8

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] 蛋白質の構造形成に必要な最小情報とは-単純化ウシ膵臓トリプシン阻害蛋白質変異体構造と熱力学-2009

    • Author(s)
      加藤淳、モハマド M イスラム、黒田裕
    • Journal Title

      蛋白質核酸酵素 54(5)

      Pages: 643-648

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] Thermodynamic and structural analysis of highly stabilizing single and double mutations in BPTI variants2009

    • Author(s)
      Islam M Mohammad, Shihori Sohya, Keiichi Noguchi, Shun-Ichi Kidokoro, Masafumi Yohda, Yutaka Kuroda
    • Journal Title

      PROTEINS 77

      Pages: 962-970

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Journal Article] Loop-length dependent SVM prediction of domain linkers for high-throughput structural proteomics2009

    • Author(s)
      Ebina T, Toh H, Kuroda Y
    • Journal Title

      Biopolymers

      Volume: 92 Issue: 1 Pages: 1-8

    • DOI

      10.1002/bip.21105

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] Improved protein splicing reaction for low solubility protein fragments without insertion of native extein residues(NERs)2009

    • Author(s)
      Kamioka Tetsuya, Tawa Minako, Sohya Shihori, Yamazaki Toshio, Kuroda Yutaka
    • Journal Title

      Biopolymers(Peptide Science) 92(5)

      Pages: 465-470

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Journal Article] Improved protein splicing reaction for low solubility protein fragments without insertion of native extein residues(NERs)2009

    • Author(s)
      Kamioka T, Tawa M, Sohya S, Yamazaki T, Kuroda Y
    • Journal Title

      Biopolymers (Peptide Science) 92(5)

      Pages: 465-470

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] Thermodynamic and structural analysis of highly stabilizing single and double mutations in BPTI variants2009

    • Author(s)
      Islam M M, Sohya S, Noguchi K, S Kidokoro S, Yohda M, Kuroda Y
    • Journal Title

      PROTEINS 77

      Pages: 962-970

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] 蛋白質の構造形成に必要な最小情報とは―単純化ウシ膵臓トリプシン阻害蛋白質変異体構造と熱力学―2009

    • Author(s)
      加藤淳、イスラムMモハマド、黒田裕
    • Journal Title

      蛋白質 核酸 酵素 54(5)

      Pages: 643-648

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Journal Article] Thermodynamic and structural analysis of highly stabilizing single and double mutations in BPTI variants2009

    • Author(s)
      Islam M M, Sohya S, Noguchi K, KidokoroS, Yohda M, Kuroda Y
    • Journal Title

      PROTEINS

      Volume: 77 Issue: 4 Pages: 962-970

    • DOI

      10.1002/prot.22522

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Journal Article] Methods for Enhancing Protein Solubility and the Effect of SEP-Tags on Protein Solubility (in Japanese)2008

    • Author(s)
      A., IKato, N., zumikawa, Y., Kuroda
    • Journal Title

      SeibutsuButsuri 48 3)

      Pages: 185-189

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] Mutational analysis of protein solubility enhancement using short peptide tags2007

    • Author(s)
      A., Kato, K., Maki, T., Ebina, K., Kuwajima, K., Soda, Y., Kuroda
    • Journal Title

      Biopolymers 84(2)

      Pages: 12-18

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] Thermodynamic properties of BPTI variants with highly simplified amino acid sequences2007

    • Author(s)
      Kato, A., Yamada, M., Nakamura, S., Kidokoro. S-I., Kuroda, Y.
    • Journal Title

      J. Mol. Biol 372(3)

      Pages: 737-746

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] SEIBUTUBUTSURI-HANDBOOK (Artificial design of protein : Handbook of Biophysics, in Japanese)2007

    • Author(s)
      Y., Kuroda (contribution to)
    • Journal Title

      Published by Asakura Shoten, (Editor Ishiwatari, S., et. al.) 680

      Pages: 491-492

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] Thermodynamic properties of BPTI variants with highly simplified amino acid sequences2007

    • Author(s)
      A., Kato, M., Yamada, S., Nakamura, S-I., Kidokoro. Y., Kuroda
    • Journal Title

      J. Mol. Biol 372(3)

      Pages: 737-746

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] POODLE-L: A two-level SVM prediction system for reliably predicting long disordered regions2007

    • Author(s)
      Hirose, S., Shimizu, K., Kanai, S., Kuroda, Y., and Noguchi T.
    • Journal Title

      Bioinformatics 8

      Pages: 2046-2053

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] Mutational analysis of protein solubility enhancement using short peptide tags2007

    • Author(s)
      Kato A., Maki K., Ebina T., Kuwajima K., Soda K., Kuroda Y.
    • Journal Title

      Biopolymers 85

      Pages: 12-18

    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] Mutational analysis of protein solubility enhancement using short peptide tags2007

    • Author(s)
      Kato, A., Maki K., Ebina, T., Kuwajima, K., Soda, K., and Kuroda, Y.
    • Journal Title

      Biopolymers 84(2)

      Pages: 12-18

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] POODLE-L : A two-level SVM prediction system for reliably predicting long disordered regions2007

    • Author(s)
      S., Hirose, K., Shimizu, S., Kanai, Y., Kuroda, T., Noguchi
    • Journal Title

      Bioinformatics 8

      Pages: 2046-2053

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] Improvement of domain linker prediction by incorporating loop length-dependent characteristics2006

    • Author(s)
      T.Tanaka, S.Yokoyama, Y.Kuroda
    • Journal Title

      Biopolymers(Peptide Science) 82(4)

      Pages: 161-168

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Journal Article] Identification of putative domain linkers by a neural network-application to a large sequence database-2006

    • Author(s)
      S., Miyazaki, Y., Kuroda, S., Yokoyama
    • Journal Title

      BMC Bioinformatics 7

      Pages: 323-323

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] Sarbolouki M.N.,Structural and functional characterization of a mutant of Pseudocerastes persicus natriuretic peptide2006

    • Author(s)
      Maryam M.E., Amininasab M., Hondo T., Kikuchi J., Kuroda Y., Naderi-Manesh H.
    • Journal Title

      Protein and Reptide Letters 13(3)

      Pages: 295-300

    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] Identification of putative domain linkers by a neural network - application to a large sequence database -2006

    • Author(s)
      Miyazaki S., Kuroda Y., Yokoyama S.
    • Journal Title

      BMC Bioihformatics 7

      Pages: 323-323

    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] Computer-aided NMR assay for detecting natively folded structural domains2006

    • Author(s)
      T.Hondoh, A.Kato, S.Yokoyama, Y.Kuroda
    • Journal Title

      Protein Science (in press)

    • Data Source
      KAKENHI-PROJECT-16500189
  • [Journal Article] Improvement of domain linker prediction by incorporating loop length-dependent characteristics2006

    • Author(s)
      Tanaka T., Yokoyama S., Kuroda Y.
    • Journal Title

      Biopolyiners (Peptide Science) 84(2)

      Pages: 161-168

    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] Identification of putative domain linkers by a neural network-application to a large sequence database-2006

    • Author(s)
      Miyazaki S., Kuroda Y., Yokoyama S.
    • Journal Title

      BMC Bioinformatics 7

      Pages: 323-323

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] Improvement of domain linker prediction by incorporating loop length-dependent characteristics2006

    • Author(s)
      T.Tanaka, S.Yokoyama, Y.Kuroda
    • Journal Title

      Biopolymers (Peptide Science) 82(4)

      Pages: 161-168

    • Data Source
      KAKENHI-PROJECT-16041247
  • [Journal Article] Structural and functional characterization of a mutant of Pseudocerastes persicus natriuretic peptide2006

    • Author(s)
      M.M.Elmi, M.Amininasab, T.Hondoh, J.Kikuchi, Y.Kuroda, H.Naderi-Manesh, M.N.Sarbolouki
    • Journal Title

      Protein and Peptide Letters 13(3)

      Pages: 295-300

    • Data Source
      KAKENHI-PROJECT-16041247
  • [Journal Article] Improvement of domain linker prediction by incorporating loop length-dependent characteristics2006

    • Author(s)
      T.Tanaka, S.Yokoyama, Y.Kuroda
    • Journal Title

      Biopolymers (Peptide Science) 84(2)

      Pages: 161-168

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Journal Article] Computer-aided NMR assay for detecting natively folded structural domains2006

    • Author(s)
      T.Hondoh, A.Kato, S.Yokoyama, Y.Kuroda
    • Journal Title

      Protein Science 15(4)

      Pages: 871-883

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Journal Article] Structural and functional characterization of a mutant of Pseudocerastes persicus natriuretic peptide2006

    • Author(s)
      M.M.Elmi, M.Amininsab, T.Hondoh, J.Kikuchi, Y.Kuroda, H.Naderi-Manesh, M.N.Sarbolouki
    • Journal Title

      Protein and Peptide Letters 13(3)

      Pages: 295-300

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Journal Article] Computer-aided NMR assay for detecting natively folded structural domains2006

    • Author(s)
      Hondoh T., Kato A., Yokoyama S., Kuroda Y.
    • Journal Title

      Protein Science 15(4)

      Pages: 871-883

    • Data Source
      KAKENHI-PROJECT-18500225
  • [Journal Article] Structural and functional characterization of a mutant of Pseudocerastes persicus natriuretic peptide2006

    • Author(s)
      M.M.Elmi, M.Amininasab, T.Hondoh, J.Kikuchi, Y.Kuroda, H.Naderi-Manesh, M.N.Sarbolouki
    • Journal Title

      Protein and Peptide Letters 13(3)

      Pages: 295-300

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Journal Article] Improvement of domain linker prediction by incorporating loop length-dependent characteristics2006

    • Author(s)
      T.Tanaka, S.Yokoyama, Y.Kuroda
    • Journal Title

      Biopolymers (Peptide Science) 82(4)

      Pages: 161-168

    • Data Source
      KAKENHI-PROJECT-16500189
  • [Journal Article] Computer-aided NMR assay for detecting natively folded structural domains2006

    • Author(s)
      T.Hondoh, A.Kato, S.Yokoyama, Y.Kuroda
    • Journal Title

      Protein Science (in press)

    • Data Source
      KAKENHI-PROJECT-16041247
  • [Journal Article] Computer-aided NMR assay for detecting natively folded structural domains2006

    • Author(s)
      T.Hondoh, A.Kato, S.Yokoyama, Y.Kuroda
    • Journal Title

      Protein Science 15

      Pages: 871-883

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Journal Article] ProteoMix : an integrated and flexible system for interactively analyzing large numbers of protein sequences2004

    • Author(s)
      E.Chikayama, A.Kurotani, Y.Kuroda, S.Yokoyama
    • Journal Title

      Bioinformatics 20

      Pages: 2836-2838

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Journal Article] ProteoMix : an integrated and flexible system for interactively analyzing large numbers of protein sequences, Bioinformatic2004

    • Author(s)
      Chikayama E., Kurotani A., Kuroda Y., Yokoyama S.
    • Journal Title

      Bioinformatics 20

      Pages: 2836-2838

    • Data Source
      KAKENHI-PROJECT-16500189
  • [Journal Article] ProteoMix : an integrated and flexible system for interactively analyzing large numbers of protein sequences, Bioinformatic2004

    • Author(s)
      Chikayama E., Kurotani A., Kuroda Y., Yokoyama S.
    • Journal Title

      Bioinformatics 20

      Pages: 2836-2838

    • Data Source
      KAKENHI-PROJECT-16041247
  • [Journal Article] Analysis of amino acid contributions to protein solubility using short peptide tags fused to a simplified BPTI variant

    • Author(s)
      Islam M M, Khan M M A, Kuroda Y
    • Journal Title

      BBA(Proteins and Proteomics)

      Volume: (in press)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Patent] 抗原組成物2017

    • Inventor(s)
      黒田裕、M Islam、 三浦史帆、R Nafsoon、上岡哲矢
    • Industrial Property Rights Holder
      黒田裕、M Islam、 三浦史帆、R Nafsoon、上岡哲矢
    • Industrial Property Rights Type
      特許
    • Filing Date
      2017
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Patent] 組換ポリペプチドの発現量及び収量の向上方法2017

    • Inventor(s)
      黒田裕、NAUTIYAL Kalpana、上岡哲矢
    • Industrial Property Rights Holder
      黒田裕、NAUTIYAL Kalpana、上岡哲矢
    • Industrial Property Rights Type
      特許
    • Filing Date
      2017
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Patent] 可溶性予測装置および可溶性予測方法2009

    • Inventor(s)
      廣瀬修一、野口保、五島直樹、河村義史、黒田裕
    • Industrial Property Rights Holder
      産業技術総合研究所、バイオ産業情報化コンソーシアム、東京農工大学
    • Industrial Property Number
      2009-290519
    • Filing Date
      2009-12-22
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Patent] 発現予測装置および発現予測方法2009

    • Inventor(s)
      廣瀬修一、野口保、五島直樹、河村義史、黒田裕
    • Industrial Property Rights Holder
      産業技術総合研究所、バイオ産業情報化コンソーシアム、東京農工大学
    • Industrial Property Number
      2009-290490
    • Filing Date
      2009-12-22
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Patent] 国立大学法人東京農工大学2005

    • Inventor(s)
      加藤淳, 黒田裕
    • Industrial Property Rights Holder
      東京農工大学
    • Filing Date
      2005-12-12
    • Data Source
      KAKENHI-PROJECT-16041247
  • [Patent] 国立大学法人東京農工大学2005

    • Inventor(s)
      加藤 淳, 黒田 裕
    • Industrial Property Rights Holder
      東京農工大学
    • Filing Date
      2005-12-12
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Patent] 国立大学法人 東京農工大学2005

    • Inventor(s)
      加藤淳, 黒田裕
    • Industrial Property Rights Holder
      東京農工大学
    • Filing Date
      2005-12-12
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16500189
  • [Patent] 国立大学法人東京農工大学2004

    • Inventor(s)
      加藤 淳, 黒田 裕
    • Industrial Property Rights Holder
      東京農工大学
    • Filing Date
      2004-12-10
    • Data Source
      KAKENHI-PROJECT-16041247
  • [Presentation] Physical and Biophysical Chemistry (Division I)2021

    • Author(s)
      Yutaka Kuroda
    • Organizer
      51st IUPAC General Assembly
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Stochastic modeling of the effect of vaccination strategies on the spread of a COVID-19-type virus2021

    • Author(s)
      Yuki Matsuzawa、Shiho Ando、Mc Gahan Patricia、Hiromichi Tsurui、Hall Damien、Yutaka Kuroda
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 静電相互作用により凝集したデングウイルス由来エンベロープタンパク質の物性及び多価免疫に対する評価2021

    • Author(s)
      大川 真実、Nafsoon Rahman、三浦 史帆、Md. Kibria、Mohammad Islam、黒田 裕
    • Organizer
      第44回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 溶解性成業ペプチド(SCP)タグによって会合させた BPTI 蛋白質の物性と免疫原性の解析2021

    • Author(s)
      黒田 裕、Rahman Nafsoon、Kabir M. Golam、Islam M, Mohammad
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Reverse engineering of high-temperature reversible oligomers and amyloids in PDZ32021

    • Author(s)
      Sawaros Onchaiya、Tomonori Saotome、Shun-ichi Kidokoro、Jose C. Martinez、Yutaka Kuroda
    • Organizer
      第44回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Expression of two disulfide-bonded EGFR extracellular domain III in Escherichia coli using a SEP tag: Biophysical, functional characterization, and its immunogenic potential2021

    • Author(s)
      Subbaian Brindha、Md. Golam Kibria、Yutaka Kuroda
    • Organizer
      第44回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] In vivo immunogenicity of amorphous aggregates made of misfolded anti-EGFR single domain antibody (VHH)2021

    • Author(s)
      Md. Golam Kibria、Yoko Akazawa-Ogawa、Yoshihisa Hagihara、Yutaka kuroda
    • Organizer
      第44回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Analysis of amino acid sequence variation in the RBD of SARS-CoV-22021

    • Author(s)
      Cheng ZhiRui、Yutaka Kuroda、Atsushi Kurotani
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Flashing Luciferase: its new structure and various level of dynamics2021

    • Author(s)
      Tosho Yamazaki、Naohiro Kobayashi、Nan Wu、Tomonori Saotome、Kyoko Takatsu、 Satoru Unzai、Yutaka Kuroda
    • Organizer
      ISMAR (international NMR conference), 22nd International Society of Magnetic Resonance Conference 9th Asia-pacific NMR symposium(APNMR9)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] アルギニンまたはリジンで構成される溶解性向上ペプチドタグの蛋白質熱凝集抑制能評価2021

    • Author(s)
      福谷 星、Kibria Md.Golam、赤澤 陽子、萩原 義久、黒田 裕
    • Organizer
      第44回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] The conformational stability analysis of dengue virus envelope domain III (ED3) wild type and its mutants by accelerated Molecular Dynamics simulation2021

    • Author(s)
      Xian Jingwen、Hiromichi Tsurui、Yutaka Kuroda
    • Organizer
      第11回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] PSD95-PDZ3 の一残基置換による高温での可逆的なオリゴマー(RO)形成の阻害およびアミロイド線維の抑制2021

    • Author(s)
      早乙女 友規、Onchaiya Sawaros、目崎 太一、Martinez Jose、城所 俊一、黒田 裕
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Analysis of amino acid sequence variation in the RBD of SARS-CoV-22021

    • Author(s)
      Cheng Zhirui、Matsuzawa Yuki、Kurotani Atsushi、Kuroda Yutaka
    • Organizer
      第11回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Terminology, Nomenclature and Symbols (ICTNS)2021

    • Author(s)
      Yutaka Kuroda
    • Organizer
      51st IUPAC General Assembly
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] The conformational stability analysis of dengue virus envelope domain III(ED3) wild type and its mutants by molecular dynamics simulation2021

    • Author(s)
      Jingwen Xian、Hiromichi Tsurui、Atsushi Kurotani、Yutaka Kuroda
    • Organizer
      第59回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] セレンテラジン誘導体を用いたガウシアルシフェラーゼ基質相互作用の核磁気共鳴法による研究2021

    • Author(s)
      髙津 京子、小林 直宏、Yves JANIN、山崎 俊夫、黒田 裕
    • Organizer
      第44回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 格子モデルを用いたCOVID-19等伝染性ウイルスの感染拡大シミュレーション2020

    • Author(s)
      安東 紫帆、松沢 佑紀、黒田 裕
    • Organizer
      第10回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 溶解性制御タグ(SCPタグ)を用いたタンパク質凝集体の形成速度の解析及びその制御法の開発2020

    • Author(s)
      Onchaiya Sawaros、Velmurugan Punitha、黒田裕
    • Organizer
      第9回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 静電相互作用により会合したデングED3タンパク質凝集体の物性と免疫原性の評価2020

    • Author(s)
      大川 真実、Rahman Nafsoon、三浦 史帆、黒田 裕
    • Organizer
      第9回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] デング・エンベロープ蛋白質第3ドメインのミスフォールディングと凝集2020

    • Author(s)
      黒田 裕 、早乙女 友規
    • Organizer
      第58回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 溶解性制御タグ(SCPタグ)を用いたタンパク質凝集体の形成速度の解析及びその制御法の開発2020

    • Author(s)
      Onchaiya Sawaros、Velmurugan Punitha、黒田 裕
    • Organizer
      第9回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-17F17392
  • [Presentation] ラテックス凝集法を用いた抗デング3 型ウイルス由来エンベロープタンパク質第3 ドメイン抗体の検出2020

    • Author(s)
      井上 絢惠、福谷 星、黒田 裕
    • Organizer
      第10回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] PSD95-PDZ3 の熱変性過程で可逆的に形成された高温での可逆的なオリゴマーのリバースエンジニアリング2020

    • Author(s)
      Onchaiya Sawaros、早乙女 友規、城所 俊一、黒田 裕
    • Organizer
      第10回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Amorphous aggregates of dengue variants induce irreversible depolarization of mitochondria and the release of cytochrome c. online2020

    • Author(s)
      Aklima Jannatul, Velmurugan Punitha, Kuroda Yutaka, Ohta Yoshihiro
    • Organizer
      第93回日本生成化学大会
    • Data Source
      KAKENHI-PROJECT-17F17392
  • [Presentation] 新型コロナウイルスの変異体予測モデルの開発2020

    • Author(s)
      Cheng ZhiRui、黒谷篤之、黒田裕
    • Organizer
      第10回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] デング熱ウィルスED3における高頻出アミノ酸変異箇所の効率的な予測手法の開発2020

    • Author(s)
      Xian Jingwen、黒谷 篤之、黒田 裕
    • Organizer
      第10回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Pictet-Spengler 反応を用いた抗EGFR-VHHのN末端特異的蛍光標識2020

    • Author(s)
      福谷 星、福沢 世傑、黒田 裕
    • Organizer
      第9回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Nanometer scale sub-visible aggregates can enhance a protein's immunogenicity2019

    • Author(s)
      Rahman Nafsoon, Islam M Mohammad, Unzai Satoru, Kuroda Yutaka
    • Organizer
      第19回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 液液相分離の粗粒化モデル作成2019

    • Author(s)
      小原 真、河村 直樹、黒田 裕
    • Organizer
      第8回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Biophysical studies of protein misfolding, solubility,and aggregation2019

    • Author(s)
      Yutaka Kuroda, Tomonori Saotome
    • Organizer
      The 19th KIAS(Korea Institute for Advanced Study) Conference on Protein Structure and Function
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] SCPタグを付加したBPTIの溶解傾向性におけるアミノ酸の寄与の探究2019

    • Author(s)
      髙木 開生、黒田 裕
    • Organizer
      第8回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Investigation on the relationship between cytotoxicity and amorphous oligomers2019

    • Author(s)
      Velmurugan Punitha, Aklima Jannatul, Ohta Yoshihiro, Kuroda Yutaka
    • Organizer
      第5回国立精神神経医療センター・東京農工大学合同シンポジウム
    • Data Source
      KAKENHI-PROJECT-17F17392
  • [Presentation] DEN4ED3におけるプロ配列(pro region)付加によるジスルフィド結合の形成に関する解析2019

    • Author(s)
      山本 裕子、早乙女 友規、黒田 裕
    • Organizer
      第8回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 疎水性の短いペプチドタグを付加したデングウイルス由来エンベロープタンパク質第3ドメインの免疫原性及び物性の解析2019

    • Author(s)
      塩飽 祐佳里、三浦 史帆、黒田 裕
    • Organizer
      第8回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] BPTIをモデルタンパク質に用いた疎水性ペプチドタグの付加によるアモルファス会合体の細胞毒性2019

    • Author(s)
      前田 華子、Velmurugan Punitha, Aklima Jannatul, 太田 善浩、黒田 裕
    • Organizer
      第8回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Biophysical and immunological study of natively folded and low soluble precipitate species of anti-EGFR single domain antibody (VHH)2019

    • Author(s)
      Kibria Md Golam, Akazawa-Ogawab Yoko, Hagihara Yoshihisa, Kuroda Yutaka
    • Organizer
      第19回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Biophysical analysis of protein solubility and aggregation2019

    • Author(s)
      Kuroda Yutaka
    • Organizer
      International Powder and Nanotechnology Forum(IPNF) 2019
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Investigation on the relationship between cytotoxicity and amorphous oligomers2019

    • Author(s)
      Velmurugan Punitha, Aklima Jannatul, Ohta Yoshihiro, Kuroda Yutaka
    • Organizer
      第57回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Investigation on the relationship between cytotoxicity and amorphous oligomers2019

    • Author(s)
      Velmurugan Punitha, Aklima Jannatul, Ohta Yoshihiro, Kuroda Yutaka
    • Organizer
      第5回国立精神神経医療センター・東京農工大学合同シンポジウム
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Investigation on the relationship between cytotoxicity and amorphous oligomers2019

    • Author(s)
      Velmurugan Punitha, Aklima Jannatul, Ohta Yoshihiro, Kuroda Yutaka
    • Organizer
      第57回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-17F17392
  • [Presentation] Biophysical studies of a protein’s amorphous aggregation and its effect on immune response2019

    • Author(s)
      Kuroda Yutaka
    • Organizer
      BSBMB (Bangladesh Society for Biochemistry and Molecular Biology) Conference 2019 “Life Sciences in Achieving Sustainable Development Goals”
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 深層学習によるドメインリンカー予測の改良2019

    • Author(s)
      松沢 佑紀、黒田 裕
    • Organizer
      第19回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 蛋白質立体構造解析のフロンティア2018

    • Author(s)
      黒田 裕(オーガナイザー:城所 俊一)
    • Organizer
      第18回日本蛋白質科学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 深層学習を用いたドメインリンカー予測2018

    • Author(s)
      松沢 佑紀、河村 直樹、黒田 裕
    • Organizer
      第41回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Nanometer scale sub-visible aggregates can enhance a protein’s immunogenicity2018

    • Author(s)
      Rahman Nafsoon, Islam M Mohammad, Kuroda Yutaka
    • Organizer
      第41回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 機械学習(SVM)を用いたドメインリンカー予測2018

    • Author(s)
      松沢佑紀、河村直樹、黒田裕
    • Organizer
      第7回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 格子モデルを用いたタンパク質凝集のシミュレーション2018

    • Author(s)
      小原 真、河村 直樹、黒田 裕
    • Organizer
      第41回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Enhancing Solubility of Anti-EGFR Single chain Antibody Fragment (ScFV) via Solubility Enhancing Peptides (SEP) Tags2018

    • Author(s)
      Nautiyal Kalpana, Kibria Md.Golam, Akazawa-Ogawa Yoko, Hagihara Yoshihisa, Kuroda Yutaka
    • Organizer
      第18回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Biophysical characterization of an insoluble species formed by a chemically intact single disulfide bonded BPTI2018

    • Author(s)
      Velmurugan Punitha, Kuroda Yutaka
    • Organizer
      第18回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 蛋白質のアモルファス凝集の生物物理学的研究2018

    • Author(s)
      黒田 裕
    • Organizer
      第18回日本蛋白質科学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 生物情報科学的手法を用いた蛋白質の構造・物性解析とその実験的検証2018

    • Author(s)
      黒田 裕 (座長:渡辺元)
    • Organizer
      第161回日本獣医学会学術集会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Control and Characterization of Sub-Visible Amorphous Protein Aggregates Using Short Solubility Controlling Peptide Tags2018

    • Author(s)
      Md. Golam Kabir, Mohammad Monirul Islam, Yutaka Kuroda
    • Organizer
      Fourth National Conference of Bangladesh Crystallographic Association
    • Invited
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 格子モデルシミュレーションによるタンパク質凝集体形成の分析2018

    • Author(s)
      小原真、河村直樹、黒田裕
    • Organizer
      第7回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 蛋白質・ペプチドの凝集と膜のないオルガネラ2018

    • Author(s)
      黒田 裕(オーガナイザー:永井 義隆)
    • Organizer
      第18回日本蛋白質科学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 分子シミュレーション及び実験によるAnti-EGFR scfvの溶解性予測と評価2018

    • Author(s)
      廣瀬克彦、Kalpana Nautiyal、Md. Golam Kibria、黒田裕
    • Organizer
      第7回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 短いペプチドタグを付加したデングウイルス由来エンベロープ蛋白質ドメイン3における会合状態および免疫原性の評価2018

    • Author(s)
      三浦 史帆、Islam M Mohammad、黒田 裕
    • Organizer
      第18回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Biophysical characterization of an insoluble species formed by a chemically intact single disulfide bonded BPTI2018

    • Author(s)
      Punitha Velmurugan, Yutaka Kuroda
    • Organizer
      第18回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-17F17392
  • [Presentation] A hetero-micro-seeding strategy for readily crystallizing closely related protein variants2018

    • Author(s)
      Mohammad M. Islam, Yutaka Kuroda
    • Organizer
      Fourth National Conference of Bangladesh Crystallographic Association
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] Design and development of a soludle single-chain variable fragment (ScFc biological activity)2018

    • Author(s)
      Kibria Md Golam, Nautiyal Kalpana, Akazawa-Ogawa Yoko, Hagihara Yoshihisa, Kuroda Yutaka
    • Organizer
      第41回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] デングウイルス由来ED3におけるPro331のシストランス異性化がフォールディングとミスフォールディングに与える影響の探求2018

    • Author(s)
      山本裕子、早乙女友規、沼本修孝、伊倉貞吉、伊藤暢聡、黒田裕
    • Organizer
      第7回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] K4型デングウイルス由来エンベロープ第3ドメインの封入体の巻き戻しから生じる構造の異なる二種類のコンホマーに関する考察2018

    • Author(s)
      早乙女 友規、山崎 俊夫、黒田 裕
    • Organizer
      第18回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] 短いペプチドタグを付加したデングウイルス由来エンベロープタンパク質第3ドメインにおける会合状態および免疫原性の評価2018

    • Author(s)
      三浦 史帆、Islam M Mohammad、黒田 裕
    • Organizer
      第41回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-18H02385
  • [Presentation] Crystal structures of dengue virus protein revealed ED3 sero-specificity2017

    • Author(s)
      Manjiri R. Kulkarni, Mohammad M. Islam, Nobutaka Numoto, Montasir M. Elahi, Nobutoshi Ito, Yutaka Kuroda
    • Organizer
      24th Congress and General Assembly of the International Union of Crystallography (IUCr)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] ブラウン動力学シミュレーションを用いた蛋白質の溶解性の予測2017

    • Author(s)
      リムザン万凜、Kalpana Nautiyal, 黒田裕
    • Organizer
      第6回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 短いペプチドタグを付加したD3ED3の会合状態の評価2017

    • Author(s)
      三浦史帆、上岡哲矢、黒田裕
    • Organizer
      第6回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 計算機シミュレーションを用いた蛋白質・ペプチドの凝集性・溶解性の研究計算機シミュレーションを用いた蛋白質・ペプチドの凝集性・溶解性の研究2017

    • Author(s)
      黒田裕
    • Organizer
      蛋白研セミナー「産業応用を志向するタンパク質溶液研究」
    • Invited
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 複数変異導入デングウィルス由来ED3に対するモデリングと熱安定性評価2017

    • Author(s)
      萩原くるみ、沼本修孝、伊藤暢聡、黒田裕
    • Organizer
      第6回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] All-atoms molecular dynamics analysis of the basic amyloidogenic fragment of IAPP2017

    • Author(s)
      Richa Tambi, Gentaro Morimoto, Makoto Taiji, Yutaka Kuroda
    • Organizer
      第6回日本生物物理学会関東支部会
    • Place of Presentation
      早稲田大学先端生命医科学センター(東京都新宿区)
    • Year and Date
      2017-03-13
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] Crystal structures of highly simplified BPTIs provide insights into hydration driven increase of unfolding enthalpy2017

    • Author(s)
      Mohammad M. Islam、Masafumi Yohda、Shun-Ichi Kidokoro、Yutaka Kuroda
    • Organizer
      第17回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] SEP tags enhance the solubility and yield of recombinant TEV protease without altering its activity2017

    • Author(s)
      Nautiyal Kalpana, Nafsoon Rahman, Yutaka Kuroda
    • Organizer
      第6回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] Short peptide tags in academic research and biotechnological applications of proteins2017

    • Author(s)
      Mohammad M. Islam, Yutaka Kuroda
    • Organizer
      National Conference on Natural Science and Technology at Asian University for Women
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 高温条件下で変性したDEN4 ED3の可逆的なオリゴマー形成の残基置換による阻害2017

    • Author(s)
      早乙女友規、中村成芳、モハマド イスラム、 中澤晶子、マリアノ デラロール、有坂文雄、城所俊一、黒田裕
    • Organizer
      第6回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 溶解性制御ペプチドタグ(SCP)タグを用いた蛋白質の可溶で不定形な凝集体形成の制御2017

    • Author(s)
      Golam M. Kabir、Mohammad M. Islam, Yutaka Kuroda
    • Organizer
      第17回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] SEP tags enhance the solubility and yield of recombinant TEV protease without altering its activity2017

    • Author(s)
      Kalpana Nautiyal、Nafsoon Rahman、Yutaka Kuroda
    • Organizer
      第17回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] Crystallographic studies of sero-specific Dengue ED3 immune response2017

    • Author(s)
      Manjiri R. Kulkarni、Mohammad M. Islam、Nobutaka Numoto、Montasir M. Elahi、Nobutoshi Ito、Yutaka Kuroda
    • Organizer
      American Crystallographic Association annual meeting
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] Control and characterization of soluble amorphous protein oligomers using short solubility controlling peptide tags2017

    • Author(s)
      Md. Golam kabir, Mohammad M. Islam, Yutaka Kuroda
    • Organizer
      第6回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] ペプチド溶解性の分子動力学シミュレーション2016

    • Author(s)
      黒田 裕
    • Organizer
      第5回日本生物物理学会関東支部会
    • Place of Presentation
      (財)桐生地域地場産業振興センター(群馬県桐生市)
    • Year and Date
      2016-03-10
    • Invited
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] Modeling and experimental assessment of buried Leu-Ile mutation in DEN4 ED32016

    • Author(s)
      Kulkarni Manjiri Ravindra, Nobutaka Numoto, Nobutoshi Ito, Yutaka Kuroda
    • Organizer
      大阪大学蛋白室研究所セミナー「構造を基盤とする蛋白質科学における未解決問題」
    • Place of Presentation
      東京大学先端科学技術研究センター(東京都目黒区)
    • Year and Date
      2016-03-01
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] Molecular dynamics simulations of the basic amyloidogenic unit of IAPP2016

    • Author(s)
      Richa Tambi, Satoshi Kosuda, Gentaro Morimoto, Makoto Taiji, Yutaka Kuroda
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-11-25
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] 高温条件下で変性したDEN4 ED3 の可逆的なオリゴマー形成の一残基置換による阻害2016

    • Author(s)
      早乙女友規、中村成芳、イスラム モハマド、中澤明子、城所俊一、黒田裕
    • Organizer
      第16回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] Analysis and control of protein crystallization using short peptide tags without affecting structure, thermal stability and function2016

    • Author(s)
      Mohammad M. Islam, Shigeyoshi Nakamura, Keiichi Noguchi, Masafumi Yohda, Sun-Ichi Kidokoro, Yutaka Kuroda
    • Organizer
      第54回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 機械学習法SVMを用いたヘリカルリンカー予測機H-DROP2016

    • Author(s)
      井出 宗一郎, Tambi Richa, 鈴木 涼祐, 蝦名 鉄平, 黒田 裕
    • Organizer
      大阪大学蛋白室研究所セミナー「構造を基盤とする蛋白質科学における未解決問題」
    • Place of Presentation
      東京大学先端科学技術研究センター(東京都目黒区)
    • Year and Date
      2016-03-01
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] Plant-PrAS: a database of physicochemical and structural properties and the comparative analysis in plant proteomes2016

    • Author(s)
      Atsushi Kurotani, Alexander Tokmakov, Yutaka Kuroda, Kazuo Shinozaki, Tetsuya Sakurai
    • Organizer
      第57回植物生理学会年会
    • Place of Presentation
      岩手大学上田キャンパス(岩手県盛岡市)
    • Year and Date
      2016-03-18
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] 蛋白質工学を用いた会合と溶解性の最新の研究2016

    • Author(s)
      黒田 裕
    • Organizer
      第54回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] タンパク質の溶解性の物理化学的解析及びその制御2016

    • Author(s)
      黒田 裕
    • Organizer
      第16回日本蛋白質科学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] ペプチド溶解性の全原子分子動力学シミュレーション及びその実験的検証2016

    • Author(s)
      黒田 裕
    • Organizer
      第54回日本生物物理学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 分子動力学シミュレーションを用いたタンパク質・ペプチドの溶解性解析2016

    • Author(s)
      黒田 裕
    • Organizer
      大阪大学蛋白室研究所セミナー「構造を基盤とする蛋白質科学における未解決問題」
    • Place of Presentation
      東京大学先端科学技術研究センター(東京都目黒区)
    • Year and Date
      2016-03-01
    • Invited
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] Unusual reversible oligomerization of unfolded Dengue envelope protein domain 3 at high temperature and its abolition by a point mutation2016

    • Author(s)
      Tomonori Saotome, Shigeyoshi Nakamura, Mohammad M. Islam, Akiko Nakazawa, Mariano Dellarole, Fumio Arisaka, Shun-ichi Kidokoro, Yutaka Kuroda
    • Organizer
      第54回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] ペプチド溶解性の分子動力学シミュレーション2016

    • Author(s)
      黒田裕
    • Organizer
      第5回日本生物物理学会関東支部会
    • Place of Presentation
      (財)桐生地域地場産業振興センター(群馬県桐生市)
    • Year and Date
      2016-03-10
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] ペプチド溶解性の分子動力学シミュレーション2016

    • Author(s)
      黒田裕
    • Organizer
      第5回日本生物物理学会関東支部会
    • Place of Presentation
      (財)桐生地域地場産業振興センター(群馬県桐生市)
    • Year and Date
      2016-03-10
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] 格子モデルを用いたタンパク質凝集のシミュレーション2016

    • Author(s)
      河村直樹, 鈴木涼祐, 黒田裕
    • Organizer
      大阪大学 蛋白質研究所セミナー:構造を基盤とする蛋白質科学における未解決問題
    • Place of Presentation
      東京大学先端科学技術研究センター(東京都目黒区)
    • Year and Date
      2016-03-01
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] Plant-PrAS: a database of physicochemical and structural properties and the comparative analysis in plant proteomes2016

    • Author(s)
      Atsushi Kurotani, Alexander Tokmakov, Yutaka Kuroda, Kazuo Shinozaki, Tetsuya Sakurai
    • Organizer
      第57回植物生理学会年会
    • Place of Presentation
      岩手大学上田キャンパス(岩手県盛岡市)
    • Year and Date
      2016-03-18
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] Control and biophysical characterization of soluble protein oligomers using short peptide tags2016

    • Author(s)
      Md. Golam Kabir, Mohammad M. Islam, Tomonori Saotome, Yutaka Kuroda
    • Organizer
      第54回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 蛋白質工学を用いた会合と溶解性の最新の研究2016

    • Author(s)
      赤沼哲史、黒田裕
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-11-25
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] 格子モデルを用いたタンパク質凝集のシミュレーション2016

    • Author(s)
      河村 直樹, 鈴木 涼祐, 黒田 裕
    • Organizer
      大阪大学蛋白室研究所セミナー「構造を基盤とする蛋白質科学における未解決問題」
    • Place of Presentation
      東京大学先端科学技術研究センター(東京都目黒区)
    • Year and Date
      2016-03-01
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] 格子モデルを用いたタンパク質凝集のシミュレーション2016

    • Author(s)
      河村直樹, 鈴木涼祐, 黒田裕
    • Organizer
      大阪大学 蛋白質研究所セミナー:構造を基盤とする蛋白質科学における未解決問題
    • Place of Presentation
      東京大学先端科学技術研究センター(東京都目黒区)
    • Year and Date
      2016-03-01
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] 分子動力学シミュレーションを用いたタンパク質・ペプチドの溶解性解析2016

    • Author(s)
      黒田裕
    • Organizer
      大阪大学 蛋白質研究所セミナー:構造を基盤とする蛋白質科学における未解決問題
    • Place of Presentation
      東京大学先端科学技術研究センター(東京都目黒区)
    • Year and Date
      2016-03-01
    • Invited
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] ペプチド溶解性の全原子分子動力学シミュレーション及びその実験的検証2016

    • Author(s)
      黒田裕
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-11-25
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] Plant-PrAS: a database of physicochemical and structural properties and the comparative analysis in plant proteomes2016

    • Author(s)
      Atsushi Kurotani, Alexander Tokmakov, Yutaka Kuroda, Kazuo Shinozaki, Tetsuya Sakurai
    • Organizer
      第57回植物生理学会年会
    • Place of Presentation
      岩手大学上田キャンパス(岩手県盛岡市)
    • Year and Date
      2016-03-18
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] Large scale all-atom molecular dynamics analysis of multi-peptide systems reproduces peptide aggregation propensity in line with experimental observations2016

    • Author(s)
      Yutaka Kuroda
    • Organizer
      PEGS-Europe 2016
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] Enhancing Solubility of Antibody Fragments via Solubility Enhancing Peptides (SEP) Tags2016

    • Author(s)
      Kalpana Nautiyal、Hiromitsu Sakurai、Satoshi Kosuda、Soichiro Ide、Yoko Ogawa、Yoshihisa Hagihara、Yutaka Kuroda
    • Organizer
      第16回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 分子動力学シミュレーションを用いたタンパク質・ペプチドの溶解性解析2016

    • Author(s)
      黒田裕
    • Organizer
      大阪大学 蛋白質研究所セミナー:構造を基盤とする蛋白質科学における未解決問題
    • Place of Presentation
      東京大学先端科学技術研究センター(東京都目黒区)
    • Year and Date
      2016-03-01
    • Invited
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] Standalone definition of putatively independent structural domain: IS-Dom2016

    • Author(s)
      Soichiro Ide, Teppei Ebina, Richa Tambi, Yutaka Kuroda
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-11-25
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] 機械学習法SVMを用いたヘリカルリンカー予測機H-DROP2016

    • Author(s)
      井出宗一郎, Tambi Richa, 鈴木涼祐, 蝦名鉄平, 黒田裕
    • Organizer
      大阪大学 蛋白質研究所セミナー:構造を基盤とする蛋白質科学における未解決問題
    • Place of Presentation
      東京大学先端科学技術研究センター(東京都目黒区)
    • Year and Date
      2016-03-01
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 機械学習法SVMを用いたヘリカルリンカー予測機H-DROP2016

    • Author(s)
      井出宗一郎, Tambi Richa, 鈴木涼祐, 蝦名鉄平, 黒田裕
    • Organizer
      大阪大学 蛋白質研究所セミナー:構造を基盤とする蛋白質科学における未解決問題
    • Place of Presentation
      東京大学先端科学技術研究センター(東京都目黒区)
    • Year and Date
      2016-03-01
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] Modeling and experimental assessment of buried Leu-Ile mutation in DEN4 ED32016

    • Author(s)
      Kulkarni Ravindra Manjiri, Nobutaka Numoto, Nobutoshi Ito, Yutaka Kuroda
    • Organizer
      大阪大学 蛋白質研究所セミナー:構造を基盤とする蛋白質科学における未解決問題
    • Place of Presentation
      東京大学先端科学技術研究センター(東京都目黒区)
    • Year and Date
      2016-03-01
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] Peptides solubility estimated by all-atom molecular dynamics simulation of multipeptide systems concur with experimental values2015

    • Author(s)
      Yutaka Kuroda
    • Organizer
      IUPAC 45th World Chemistry Congress
    • Place of Presentation
      釜山(韓国)
    • Year and Date
      2015-08-07
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] Control of protein aggregation and oligomerization using short SEP (Solubility Enhancing Peptide) tags2015

    • Author(s)
      Kabir Md. Golam, Islam Mohammmad Monirul, 黒田 裕
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(石川県金沢市)
    • Year and Date
      2015-09-13
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 全原子 MD シミュレーションによるアラニンスキャニング変異を導入したアミロイド形成ペプチドの凝集解析2015

    • Author(s)
      小須田慧司, 末永敦, 森本元太郎, 泰地真弘人, 黒田裕
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(石川県金沢市)
    • Year and Date
      2015-09-13
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] Accelerated H-DROP: An SVM based Helical Domain linker pRedictor trained with OPtimized features2015

    • Author(s)
      Tambi Richa, Ide Soichiro, Suzuki Ryosuke, Ebina Teppei, Kuroda Yutaka
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(石川県金沢市)
    • Year and Date
      2015-09-13
    • Invited
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] Peptides solubility estimated by all-atom molecular dynamics simulation of multipeptide systems concur with experimental values2015

    • Author(s)
      Yutaka Kuroda
    • Organizer
      IUPAC 45th World Chemistry Congress
    • Place of Presentation
      釜山(韓国)
    • Year and Date
      2015-08-07
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] 多数ペプチドから成る系の全原子分子動力学シミュレーションによるペプチド溶解性2015

    • Author(s)
      黒田裕, 佐藤雄士, 末永敦, 泰地真弘人
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(石川県金沢市)
    • Year and Date
      2015-09-13
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] Accelerated H-DROP: An SVM based Helical Domain linker pRedictor trained with OPtimized features2015

    • Author(s)
      Tambi Richa, Ide Soichiro, Suzuki Ryosuke, Ebina Teppei, Kuroda Yutaka
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(石川県金沢市)
    • Year and Date
      2015-09-13
    • Invited
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] Peptides solubility estimated by all-atom molecular dynamics simulation of multipeptide systems concur with experimental values2015

    • Author(s)
      Yutaka Kuroda
    • Organizer
      IUPAC 45th World Chemistry Congress
    • Place of Presentation
      釜山(韓国)
    • Year and Date
      2015-08-07
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H04359
  • [Presentation] 全原子 MD シミュレーションによるアラニンスキャニング変異を導入したアミロイド形成ペプチドの凝集解析2015

    • Author(s)
      小須田慧司, 末永敦, 森本元太郎, 泰地真弘人, 黒田裕
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(石川県金沢市)
    • Year and Date
      2015-09-13
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] 全原子 MD シミュレーションによるアラニンスキャニング変異を導入したアミロイド形成ペプチドの凝集解析2015

    • Author(s)
      小須田 慧司, 末永 敦, 森本 元太郎, 泰地 真弘人, 黒田 裕
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(石川県金沢市)
    • Year and Date
      2015-09-13
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] Accelerated H-DROP: An SVM based Helical Domain linker pRedictor trained with OPtimized features2015

    • Author(s)
      Tambi Richa, Ide Soichiro, Suzuki Ryosuke, Ebina Teppei, Kuroda Yutaka
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(石川県金沢市)
    • Year and Date
      2015-09-13
    • Invited
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] 多数ペプチドから成る系の全原子分子動力学シミュレーションによるペプチド溶解性2015

    • Author(s)
      黒田裕, 佐藤雄士, 末永敦, 泰地真弘人
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(石川県金沢市)
    • Year and Date
      2015-09-13
    • Data Source
      KAKENHI-PROJECT-15F15080
  • [Presentation] Control of protein aggregation and oligomerization using short SEP (Solubility Enhancing Peptide) tags2015

    • Author(s)
      Kabir Md. Golam, Islam Mohammmad Monirul, 黒田 裕
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(石川県金沢市)
    • Year and Date
      2015-09-13
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] 多数ペプチドから成る系の全原子分子動力学シミュレーションによるペプチド溶解性2015

    • Author(s)
      黒田 裕, 佐藤 雄士, 末永 敦, 泰地 真弘人
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(石川県金沢市)
    • Year and Date
      2015-09-13
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] Epitope grafted mutants provide molecular insights into sero-speci_c interactions of Dengue's ED3 with it`s monoclonal antibody(Best Poster Award;ベストポスター賞受賞)2014

    • Author(s)
      Manjiri R. Kulkarni, Montasir Elahi, Monirul M. Islam, Yutaka Kuroda
    • Organizer
      2nd UTISA Symposium-2014
    • Place of Presentation
      在日本インド大使館(東京都・千代田区)
    • Year and Date
      2014-06-27
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] サポートベクターマシン(SVM)を用いたヘリカルリンカー領域の予測2013

    • Author(s)
      鈴木涼祐,蝦名鉄平,黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2013-03-04
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] システインを含むタグ配列と溶解性向上タグ配列の挿入によるGLucリフォールディングへの影響2013

    • Author(s)
      鈴木 郁也、今井 清博、黒田 裕
    • Organizer
      生物物理関東地区研究会(第2回生物物理関東支部研究会)
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] サポートベクターマシン(SVM) を用いたヘリカルリンカー領域の予測2013

    • Author(s)
      鈴木 涼祐、蝦名 鉄平、黒田 裕
    • Organizer
      生物物理関東地区研究会(第2回生物物理関東支部研究会)
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] システインを含むタグ配列と溶解性向上タグ配列の挿入によるGLucリフォールディングへの影響2013

    • Author(s)
      鈴木郁也,今井清博,黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2013-03-04
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] ガウシアルシフェラーゼのスクリーニングによる改変2013

    • Author(s)
      Wu Nan,上岡哲矢,黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2013-03-04
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] ガウシアルシフェラーゼのスクリーニングによる改変2013

    • Author(s)
      Wu Nan、上岡 哲矢、黒田 裕
    • Organizer
      生物物理関東地区研究会(第2回生物物理関東支部研究会)
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] 多数ペプチド系の全原子分子動力学シミュレーションを用いた凝集の解析2013

    • Author(s)
      佐藤 雄士、末永 敦、秋山 沙織、黒田裕
    • Organizer
      生物物理関東地区研究会(第2回生物物理関東支部研究会)
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Host Guest Analysis of Amino Acids contribution to Protein Solubility Using Short SET-Tags Fused to a Simplified BPTI2012

    • Author(s)
      Mohammad M. Islam, Yutaka Kuroda
    • Organizer
      揺らぎが機能を決める生命分子の科学第5回公開シンポジウム(招待講演)
    • Place of Presentation
      東大寺文化センター(奈良県)
    • Year and Date
      2012-01-07
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] 単純化BPTI タンパク質に融合した短いペプチド系タグを用いたアミノ酸溶解性の解析2012

    • Author(s)
      黒田 裕、カン A モンスル、イスラム M モハマド
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知県)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] 構造ドメインデータベースの作成およびそのWeb提供2012

    • Author(s)
      梅澤祐貴、蝦名鉄平、黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学(東京都)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] 構造ドメインデータベースの作成およびそのWeb提供2012

    • Author(s)
      梅澤祐貴,蝦名鉄平,黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2012-03-05
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] VanX の溶菌活性を用いたルシフェラーゼのスクリーニングの簡略化2012

    • Author(s)
      Wu N, Kamioka T, Sohya S, Matsuda T, Ikegami T, Nakamura H, Kuroda Y
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学・東山キャンパス(愛知県)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] VanXの大腸菌溶菌活性を利用した新規スクリーニング技術の開発2012

    • Author(s)
      Wu Nan、上岡哲矢、黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学(東京都)
    • Year and Date
      2012-03-05
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Biophysical Analysis of Protein Aggregation Kinetics Based on a Monomer-Oligomer Model2012

    • Author(s)
      Yutaka Kuroda, Alam M. Khan, Monirul M Islam
    • Organizer
      新学術領域研 究「揺らぎと生体機能」第6回公開シンポジウム
    • Place of Presentation
      京都テルサ(京都府)
    • Year and Date
      2012-12-05
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Contribution of individual amino acids to proteinsolubility using amino acid tag2012

    • Author(s)
      Mohammed M. A. Khan, Mohammad M. Islam, Yutaka Kuroda
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2012-03-05
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Host Guest Analysis of Amino Acids contribution to Protein Solubility Using Short SET-Tags Fused to aSimplified BPTI2012

    • Author(s)
      Mohammad M. Islam, Yutaka Kuroda
    • Organizer
      揺らぎが機能を決める生命分子の科学第5回公開シンポジウム
    • Place of Presentation
      東大寺文化センター(奈良県)(招待講演)
    • Year and Date
      2012-01-07
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] High resolution Crystal structure of Dengue 3 envelope protein domain III (ED3)2012

    • Author(s)
      Montasir Elahi, Mohammad M Islam, Keiichi Noguchi, Masafumi Yohda, Yutaka Kuroda
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学(東京都)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] VanXの大腸菌溶菌活性を利用した新規スクリーニング技術の開発2012

    • Author(s)
      Wu Nan,上岡哲矢,黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2012-03-05
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] VanXの溶菌活性を用いたルシフェラーゼのス クリーニングの簡略化2012

    • Author(s)
      Wu Nan, Tetsuya Kamioka, Shihori Sohya, Tomoki Matsuda, Takahisa Ikegami, Haruki Nakamura, Yutaka Kuroda
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学・東山キャンパス(愛知県)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] 単純化BPTIとペプチド系タグを用いたアミノ酸溶解性の時間的変化・揺らぎの解析2012

    • Author(s)
      黒田裕、カン A モンスル、イスラム M モニール
    • Organizer
      新学術領域「揺らぎと生体機能」「水和とATP」合同公開シンポジウム
    • Place of Presentation
      大阪ガーデンパレス(大阪府)
    • Invited
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] 単純化BPTI に融合したペプチド系タグ配列を用いたアミノ酸溶解性の測定2012

    • Author(s)
      Kuroda Y, Khan M A, Islam M M
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学・東山キャンパス(愛知県)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Two serotypes of dengue viruses show specifi c local structural difference in their crystal structures of envelope protein domain III(ED3)2012

    • Author(s)
      Elahi M, Islam M M, Noguchi K, Yohda M, Kuroda Y
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知県)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Effects of short solubility controlling peptide tags on protein's solubility, thermodynamics, structure and function2012

    • Author(s)
      Mohammad M Islam, Yutaka Kuroda
    • Organizer
      Conference of the Bangladesh Society for Biochemistry and Molecular Biology
    • Place of Presentation
      University of Rajshahi (Rajshahi, Bangladesh)
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Contribution of individual amino acids to protein solubility using amino acid tag2012

    • Author(s)
      Mohammed M A Khan, Mohammad M Islam, Yutaka Kuroda
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学(東京都)
    • Year and Date
      2012-03-06
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] 構造ドメインデータペースの作成およびそのWeb提供2012

    • Author(s)
      梅澤祐貴、蝦名鉄平、黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学(東京都)
    • Year and Date
      2012-03-05
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] High resolution Crystal structure of Dengue 3 envelope prote in domain III (ED3)2012

    • Author(s)
      Montasir Elahi, Mohammad M Islam, Keiichi Noguchi, Masafumi Yohda, Yutaka Kuroda
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学(東京都)
    • Year and Date
      2012-03-05
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Host Guest Analysis of Ami no Acids contribution to Protein Solubility Using Short SET-Tags Fused to a Simplified BPTI2012

    • Author(s)
      Mohammad M. Islam, Yutaka Kuroda
    • Organizer
      揺らぎが機能を決める生命分子の科学第5回公開シンポジウム
    • Place of Presentation
      東大寺文化センター(奈良県)(招待講演)
    • Year and Date
      2012-01-07
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] 独立してフォールドする構造ドメインデータベースの構築2012

    • Author(s)
      Yuki Umezawa, Teppei Ebina, Yutaka Kuroda
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学・東山キャンパス(愛知県)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] 単純化BPTI に融合したペプ チド系タグ配列を用いたアミノ酸溶解性の測定2012

    • Author(s)
      Yutaka Kuroda, Alam, M. Khan, Mohammad, M. Islam
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学・東山キャンパス(愛知県)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] カンMモハメド,イスラムMモハマド,単純化BPTIタンパク質に融合した短いペプチド系タグを用いたアミノ酸溶解性の解析2012

    • Author(s)
      黒田裕
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知県)
    • Year and Date
      2012-06-22
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Biophysical Analysis of Protein Aggregation Kinetics Based on a Monomer-Oligomer Model2012

    • Author(s)
      Kuroda Y, Khan M A, Islam M M
    • Organizer
      新学術領域研究「揺らぎと生体機能」第6回公開シンポジウム
    • Place of Presentation
      京都テルサ(京都府)
    • Invited
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Host Guest Analysis of Amino Acids contribution to Protein Solubility Using Short SET-Tags Fused to a Simplified BPTI2012

    • Author(s)
      Mohammad M. Islam, Yutaka Kuroda
    • Organizer
      揺らぎが機能を決める生命分子の科学(招待講演)
    • Place of Presentation
      東大寺文化センター(奈良県)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Effects of short solubility controlling peptide tags on protein’s solubility, thermodynamics, structure and function2012

    • Author(s)
      Mohammad M Islam, Yutaka Kuroda
    • Organizer
      Conference of the Bangladesh Society for Biochemistry and Molecular Biology
    • Place of Presentation
      University of Rajshahi(Bangladesh)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Effects of short solubility controlling peptide tags on protein's solubility, thermodynamics, structure and function2012

    • Author(s)
      Mohammad M Islam, Yutaka Kuroda
    • Organizer
      Conference of the Bangladesh Society for Biochemistry and Molecular Biology
    • Place of Presentation
      University of Rajshahi(Rajshahi, Bangladesh)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] カン・A・モンシュール,イスラム・M・モニール,単純化BPTIとペプチド系タグを用いたアミノ酸溶解性の時間的変化・揺らぎの解析2012

    • Author(s)
      黒田裕
    • Organizer
      新学術領域「揺らぎと生体機能」「水和とATP」合同公開シンポジウム
    • Place of Presentation
      大阪ガーデンパレス(大阪府)(招待講演)
    • Year and Date
      2012-09-14
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Effects of short solubility controlling peptide tags on protein's solubility, thermodynamics, structure and function2012

    • Author(s)
      Mohammad M Islam, Yutaka Kuroda
    • Organizer
      Conference of the Bangladesh Society for Biochemistry and Molecular Biology
    • Place of Presentation
      University of Rajshahi
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Two serotypes of dengue viruses show specific local structural difference in their crystal structures of envelope protein domain III(ED3)2012

    • Author(s)
      Montasir Elahi, M. Monirul Islam, Keiichi Noguchi, Masafumi Yohda,Yutaka Kuroda
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知県)
    • Year and Date
      2012-06-21
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] VanXの大腸菌溶菌活性を利用した新規スクリーニング技術の開発2012

    • Author(s)
      KurodaWu Nan、上岡哲矢、黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学(東京都)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] ヘリックスを含むドメイン境界配列の解析及びその予測2011

    • Author(s)
      辻良太郎、蝦名鉄平、黒田裕
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク(大阪府)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Catherine A. Royer, Understanding protein native expansivity by mutants affecting cavities, surface and order2011

    • Author(s)
      Jean-Baptiste Rouget, Mariano Dellarole, Kei Kobayashi, Julien Roche, Yutaka Kuroda
    • Organizer
      6^th International Meeting on Biomolecules under Pressure (IMBP2011)
    • Place of Presentation
      大津市市民会館(滋賀県)
    • Year and Date
      2011-12-13
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] ヘリックスを含むドメイン境界配列の解析及びその予測2011

    • Author(s)
      辻良太郎、蝦名鉄平、黒田裕
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      阪急エキスポパーク(大阪府)
    • Year and Date
      2011-06-07
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] ヘリックスを含むドメイン境界配列の解析及びその予測2011

    • Author(s)
      辻良太郎,蝦名鉄平,黒田裕
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      阪急エキスポパーク(大阪府)
    • Year and Date
      2011-06-07
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] 難結晶化タンパク質変異体に対するヘテロシーディング法2011

    • Author(s)
      小林慶、Mohammad M Islam、野口恵一、養王田正文、黒田裕
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      阪急エキスポパーク(大阪府)
    • Year and Date
      2011-06-07
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Understanding protein native expansivity by mutants affecting cavities, surface and order2011

    • Author(s)
      Jean-Baptiste Rouget, Mariano Dellarole, Kei Kobayashi, Julien Roche, Yutaka Kuroda, Catherine A.Royer
    • Organizer
      6^<th> International Meeting on Biomolecules under Pressure (IMBP2011)
    • Place of Presentation
      大津市市民会館(滋賀県)
    • Year and Date
      2011-12-13
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Effects of short solubility controlling peptide tags on protein solubility, thermodynamics, structure and function2011

    • Author(s)
      Mohammad M Islam, Atsushi Kato, Shihori Sohya, Mohammed Khan,Keiichi Noguchi, Masafumi Yohda, Shun-ichi Kidokoro, Yutaka Kuroda
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク(大阪府)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] 蛋白質異常凝集の原理と制御(ディスカッション)2011

    • Author(s)
      黒田裕、八木寿梓、長谷川一浩、青島貞人、佐崎元
    • Organizer
      大阪大学蛋白質研究所セミナー「蛋白質異常凝集の原理と制御」
    • Place of Presentation
      大阪大学(大阪府)(招待講演)
    • Year and Date
      2011-04-27
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Contribution of individual amino acid to protein solubility using anio acid tag2011

    • Author(s)
      Mohammed Monsur Alam Khan,Mohammad Monirul Islam,Yutaka Kuroda
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] 蛋白質異常凝集の原理と制御(ディスカッション)2011

    • Author(s)
      黒田裕、八木寿梓、長谷川一浩、青島貞人、佐崎元
    • Organizer
      大阪大学蛋白質研究所セミナー「蛋白質異常凝集の原理と制御」(招待講演)
    • Place of Presentation
      大阪大学吹田キャンパス(大阪府)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] 蛋白質異常凝集の原理と制御2011

    • Author(s)
      黒田裕,八木寿梓,長谷川一浩,青島貞人,佐崎元
    • Organizer
      大阪大学蛋白質研究所セミナー
    • Place of Presentation
      阪大吹田キャンパス(大阪府)(招待講演)
    • Year and Date
      2011-04-27
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Amino Acids Contribution to Polypeptides Solubility Analyzed Using Short Poly-Amino Acid Tags2011

    • Author(s)
      黒田裕,加藤淳, Mohammad Islam
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      阪急エキスポパーク(大阪府)
    • Year and Date
      2011-06-07
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Crystal structure of Dengue 3 envelope protein domain III2011

    • Author(s)
      Montasir Elahi,Mohammad Monirul Islam,Keiichi Noguchi,Masafumi Yohda,Yutaka Kuroda
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Understanding protein native expansivity by mutants affecting cavities, surface and order2011

    • Author(s)
      Jean-Baptiste Rouget, Mariano Dellarole, Kei Kobayashi, Julien Roche, Yutaka Kuroda, Catherine A. Royer
    • Organizer
      6th International Meeting on Biomolecules under Pressure(IMBP2011)
    • Place of Presentation
      大津市市民会館(滋賀県)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] 難結晶化タンパク質変異体に対するヘテロシーディング法2011

    • Author(s)
      小林慶、Mohammad Islam、野口恵一、養王田正文、黒田裕
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク(大阪府)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] 難結晶化タンパク質変異体に対するヘテロシーディング法2011

    • Author(s)
      小林慶,Mohammad Islam,野口恵一,養王田正文,黒田裕
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      阪急エキスポパーク(大阪府)
    • Year and Date
      2011-06-07
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Amino Acids Contribution to Polypeptides Solubility Analyzed Using Short Poly-Amino Acid Tags2011

    • Author(s)
      黒田裕、加藤淳、Mohammad Islam
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク(大阪府)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Crystal structure of Dengue 3 envelope protein domain III2011

    • Author(s)
      Montasir Elahi,Mohammad Monirul Islam, Keiichi Noguchi, Masafumi Yohda , Yutaka Kuroda
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2011-12-14
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Contribution of individual amino acidto protein solubility using amino acid tag2011

    • Author(s)
      Mohammed Monsur Alam Khan , Mohammad Monirul Islam , Yutaka Kuroda
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2011-12-13
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] VanXの大腸菌溶菌機構を利用した新規スクリーニング法の開発2011

    • Author(s)
      Nan Wu、上岡哲矢、惣谷志保里、黒田裕
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2011-12-13
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Contribution of individual amino acid to protein solubility using amino acid tag2011

    • Author(s)
      Mohammed Monsur Alam Khan, Mohammad Monirul Islam, Yutaka Kuroda
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2011-12-15
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Understanding protein native expansivity by mutants affecting cavities, surface and order2011

    • Author(s)
      Jean-Baptiste Rouget, Mariano Dellarole, Kei Kobayashi, Julien Roche, Yutaka Kuroda, Catherine A. Royer
    • Organizer
      6^<th> International Meeting on Biomolecules under Pressure
    • Place of Presentation
      大津市市民会館(滋賀県)
    • Year and Date
      2011-12-13
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Effects of short solubility controlling peptide tags on protein solubility, thermodynamics, structure and function2011

    • Author(s)
      Mohammad M Islam, Atsushi Kato, Shihori Sohya, Mohammed Khan, Keiichi Noguchi, Masafumi Yohda, Shun-ichi Kidokoro, Yutaka Kuroda
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      阪急エキスポパーク(大阪府)
    • Year and Date
      2011-06-07
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Effects of short solubility controlling peptide tags on protein solubility, thermodynamics, structure and function2011

    • Author(s)
      Mohammad M Islam, Atsushi Kato, Shihori Sohya, Mohammed Khan,Keiichi Noguchi, Masafumi Yohda, Shun-ichi Kidokoro, Yutaka Kuroda
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      阪急エキスポパーク(大阪府)
    • Year and Date
      2011-06-07
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] VanXの大腸菌溶菌機構を利用した新規スクリーニング法の開発2011

    • Author(s)
      Wu Nan,上岡哲矢,惣谷志保里,黒田裕
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Crystal structure of Dengue 3 envelope protein domain III2011

    • Author(s)
      Montasir Elahi, Mohammad Monirul Islam, Keiichi Noguchi, Masafumi Yohda, Yutaka Kuroda
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2011-12-14
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] VanX の大腸菌溶菌機構を利用した新規スクリーニング法の開発2011

    • Author(s)
      Nan Wu、上岡哲矢、惣谷志保里、黒田裕
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Amino Acids Contribution to Polypeptides Solubility Analyzed Using Short Poly-Amino Acid Tags2011

    • Author(s)
      Yutaka Kuroda, Atsushi Kato, Mohammad Islam
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      阪急エキスポパーク(大阪府)
    • Year and Date
      2011-06-07
    • Data Source
      KAKENHI-PROJECT-23651213
  • [Presentation] Effect of short tags on protein solubility, function and structure2010

    • Author(s)
      Mohammad Monirul Islam, Keiichi Noguchi, Masafumi Yohda, Yutaka Kuroda
    • Organizer
      The Role of Biochemists in Health and Environment, Graduate Biochemists Association
    • Place of Presentation
      University of Dhaka (Dhaka, Bangladesh)
    • Year and Date
      2010-05-21
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] Analysis of Three-Residue Fragment's Conformational Space2010

    • Author(s)
      木村俊太、蝦名鉄平、町田恵久海、黒田裕
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-21
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Thermally Stabilized Green Fluorescent Protein : Experimental and Theoretical Analyses2010

    • Author(s)
      秋山沙織、末永敦、小林貴幸、上岡哲矢、泰地真弘人、黒田裕
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-22
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Effect of Short Peptide Tags On Protein Solubility, Function, Structure Studied in the context of BPTI2010

    • Author(s)
      Mohammad Monirul Islam, Keiichi Noguchi, Masafumi Yohda, Yutaka Kuroda
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2010-06-16
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Thermally Stabilized Green Fluorescent Protein : Experimental and Theoretical Analyses2010

    • Author(s)
      秋山沙織、末永敦、小林貴幸、上岡哲矢、泰地真弘人、黒田裕
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-22
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] Stabilization of BPTI-[5,55] through decrease of Iocal backbone fluctuations and development of hetero-microseeding for crystallizing low-stability proteins2010

    • Author(s)
      Yutaka Kuroda, Mohamed M Islam, Kei Kobayashi
    • Organizer
      揺らぎが機能を決める生命分子の科学 第4回公開シンポジウム
    • Place of Presentation
      滋賀県立県民交流センターピアザ淡海(滋賀県)
    • Year and Date
      2010-11-30
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] Effect of short tags on protein solubility, function and structure2010

    • Author(s)
      Mohammad Monirul Islam, Keiichi Noguchi, Masafumi Yohda, Yutaka Kuroda
    • Organizer
      The Role of Biochemists in Health and Environment, Graduate Biochemists Association
    • Place of Presentation
      University of Dhaka (Dhaka, Bangladesh)
    • Year and Date
      2010-05-21
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] 1及び2残基置換によって熱安定化したBPTI変異体の実験的解析2010

    • Author(s)
      小林慶、イスラム モニル モハマド、野口恵一、城所俊一、養王田正文、黒田裕
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-22
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Analysis of Three-Residue Fragment's Conformational Space2010

    • Author(s)
      Shunta Kimura, Teippei Ebina Yutaka Kuroda
    • Organizer
      Computational Biology Research Center Workshop 2010
    • Place of Presentation
      産業技術総合研究所(東京都)
    • Year and Date
      2010-07-28
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] ドメインリンカーの構造と配列が構造ドメイン形成に及ぼす影響2010

    • Author(s)
      蝦名鉄平、岩崎駿、黒田裕
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-20
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] An SVM-Domain Linker Prediction Trained with Optimized Features Selected Random Forest and Stepwise Selection2010

    • Author(s)
      Ebina T, Toh H, Kuroda Y
    • Organizer
      First Asia-Europe Physics Summit
    • Place of Presentation
      エポカルつくば(茨城県)
    • Year and Date
      2010-03-24
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Biophysical Characterization of highly active recombinant Gaussia luciferase expressed in Escherichia coli2010

    • Author(s)
      Tharangani Rathnayaka, Minako Tawa, Shihori Sohya, Masafumi Yohda, Yutaka Kuroda
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-20
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] 短いペプチドの新しい溶解度測定法の開発2010

    • Author(s)
      島田広海、モハマド モニル イスラム、モンスル アラム カーン、辻良太郎、黒田裕
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-20
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Stabilization of BPTI-[5,55] through decrease of local backbone fluctuations and development of hetero-microseeding for crystallizing low-stability proteins2010

    • Author(s)
      Yutaka Kuroda, Mohamed M Islam, Kei Kobayashi
    • Organizer
      揺らぎが機能を決める生命分子の科学第4回公開シンポジウム
    • Place of Presentation
      滋賀県立県民交流センターピアザ淡海(滋賀県)
    • Year and Date
      2010-11-30
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Analysis of Three-Residue Fragment's Conformational Space2010

    • Author(s)
      Shunta Kimura, Teippei Ebina, Yutaka Kuroda
    • Organizer
      Computational Biology Research Center Workshop 2010
    • Place of Presentation
      産業技術総合研究所(東京都)
    • Year and Date
      2010-07-28
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Effect of Short Peptide Tags On Protein Solubility, Function, Structure Studied in the context of BPTI2010

    • Author(s)
      Mohammad Monirul Islam, Keiichi Noguchi, Masafumi Yohda, Yutaka Kuroda
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2010-06-16
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] 1及び2残基置換によって熱安定化したBPTI変異体の実験的解析2010

    • Author(s)
      小林慶、イスラムモニルモハマド、野口恵一、城所俊一、養王田正文、黒田裕
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-22
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] X-Ray Crystal Structures of Extensively Simplified BPTI Variants Determined Using the KEK Photon Factory Facility2010

    • Author(s)
      イスラムMモハマド、惣谷志保里、野口恵一、養王田正文、黒田裕
    • Organizer
      First Asia-Europe Physics Summit
    • Place of Presentation
      エポカルつくば(茨城県)
    • Year and Date
      2010-03-24
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] An SVM-Domain Linker Prediction Trained with Optimized Features Selected Random Forest and Stepwise Selection2010

    • Author(s)
      Ebina Teppei, Toh Hiroyuki, Kuroda Yutaka
    • Organizer
      First Asia-Europe Physics Summit
    • Place of Presentation
      エポカルつくば(茨城県)
    • Year and Date
      2010-03-24
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] 短いペプチドの新しい溶解度測定法の開発2010

    • Author(s)
      島田広海、モハマドモニルイスラム、モンスルアラムカーン、辻良太郎、黒田裕
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-20
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] 1及び2残基をG,A及びVに置換したBPTI変異体の主鎖構造の局所的な「揺らぎ」と熱安定性2010

    • Author(s)
      黒田裕
    • Organizer
      揺らぎが機能を決める生命分子の科学:平成22年度合同班会議
    • Place of Presentation
      加賀観光ホテル(石川県)(招待講演)
    • Year and Date
      2010-06-27
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] ドメインリンカーの構造と配列が構造ドメイン形成に及ぼす影響2010

    • Author(s)
      蝦名鉄平、岩崎駿、黒田裕
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-20
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] Analysis of Three-Residue Fragment's Conformational Space2010

    • Author(s)
      木村俊太、蝦名鉄平、町田惠久海、黒田裕
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-21
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] X-Ray Crystal Structures of Extensively Simplified BPTI Variants Determined Using the KEK Photon Factory Facility2010

    • Author(s)
      Mohammad M Islam, Shihori Sohya, Keiichi Noguchi, Masafumi Yohda, Yutaka Kuroda
    • Organizer
      First Asia-Europe Physics Summit
    • Place of Presentation
      エポカルつくば(茨城県)
    • Year and Date
      2010-03-24
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Biophysical Characterization of highly active recombinant Gaussia luciferase expressed in Escherichia coli2010

    • Author(s)
      Tharangani Rathnayaka, Minako Tawa, Shihori Sohya, Masafumi Yohda, Yutaka Kuroda
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-20
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] Purification of Recombinant Protein using Cell Wall Breakage by co-Expression of VanX2010

    • Author(s)
      上岡哲矢、惣谷志保里、黒田裕
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-20
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Purification of Recombinant Protein using Cell Wall Breakage by co-Expression of VanX2010

    • Author(s)
      上岡哲矢、惣谷志保里、黒田裕
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-20
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] 超単純化BPTIに於ける揺らぎ~X線結晶構造解析を用いた分子レベルでの解明~(Molecular Fluctuations in Extensively Simplified BPTI Variants Examfined by X-ray Crystallography)2009

    • Author(s)
      黒田裕、イスラム M モニール
    • Organizer
      新学術領域研究「揺らぎと生体機能」第3回公開シンポジウム
    • Place of Presentation
      名古屋大学(愛知県)
    • Year and Date
      2009-12-20
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Further Simplification of the BPTI Sequence : Minimum Information for Specifying a Native Protein Structure2009

    • Author(s)
      黒田裕, イスラムMモハマド, 惣谷志保里, 野口恵一, 養王田正文、
    • Organizer
      第2回日韓生体分子科学セミナー「実験とシミュレーション」
    • Place of Presentation
      名古屋大学(愛知県)
    • Year and Date
      2009-12-22
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] BPTI変異体の熱安定性とタンパク質間相互作用の共進化的視点からの解析シンポジウム タンパク質間相互作用研究の手法としての共進化解析2009

    • Author(s)
      黒田裕
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      アクティとくしま(徳島県)
    • Year and Date
      2009-10-30
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] E.coli expression of soluble and active Gaussia luciferase2009

    • Author(s)
      Tharangani Rathnayaka, Makino Erika, Sohya Shihori, Yohda Masafumi, Kuroda Yutaka
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2009-12-10
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] 点変異によって13度熱安定化したBPTI変異体の構造及び熱安定性の解析2009

    • Author(s)
      イスラムMモハマド、惣谷志保里、野口恵一、城所俊一、養王田正文、黒田裕
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      アクティとくしま(徳島県)
    • Year and Date
      2009-11-01
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] E.coli expression of soluble and active Gaussia luciferase2009

    • Author(s)
      harangani R, Makino E, Sohya S, Yohda M, Kuroda Y
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2009-12-10
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] アミノ酸配列単純化法を用いたBPTI蛋白質の構造形成及び熱安定性の解析シンポジウム2009

    • Author(s)
      黒田裕, モハマド, M イスラム
    • Organizer
      第82回日本生化学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Year and Date
      2009-10-24
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] アミノ酸配列単純化法を用いたBPTI蛋白質の構造形成及び熱安定性の解析2009

    • Author(s)
      黒田裕、イスラムMモハマド
    • Organizer
      第82回日本生化学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Year and Date
      2009-10-24
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] MOBILITY OF WATER MOLECULES INTO GFP INTERIOR AND THEIR EFFECTS ON THE THERMAL STABILITY2009

    • Author(s)
      秋山沙織, 小林貴幸, 上岡哲矢, 末永敦, 泰地真弘人, 黒田裕
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2009-12-12
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] BPTI変異体の熱安定性とタンパク質間相互作用の共進化的視点からの解析シンポジウムタンパク質間相互作用研究の手法としての共進化解析2009

    • Author(s)
      黒田裕
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      アクティとくしま(徳島県)
    • Year and Date
      2009-10-30
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] MOBILITY OF WATER MOLECULES INTO GFP INTERIOR AND THEIR EFFECTS ON THE THERMAL STABILITY2009

    • Author(s)
      秋山沙織, 小林貴幸, 上岡哲矢, 末永敦, 泰地真弘人, 黒田裕
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2009-12-12
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] 点変異によって13度熱安定化したBPTI変異体の構造及び熱安定性の解析2009

    • Author(s)
      モハマド M イスラム、惣谷志保里、野口恵一、城所俊一、養王田正文、黒田裕
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      アクティとくしま(徳島県)
    • Year and Date
      2009-11-01
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] 超単純化BPTIに於ける揺らぎ~X線結晶構造解析を用いた分子レベルでの解明~(Molecular Fluctuations in Extensively Simplified BPTI Variants Examined by X-ray Crystallography)2009

    • Author(s)
      黒田裕、イスラムMモハマド
    • Organizer
      新学術領域研究「揺らぎと生体機能」第3回公開シンポジウム
    • Place of Presentation
      名古屋大学(愛知県)
    • Year and Date
      2009-12-20
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] 最適化された記述子群を用いたドメインリンカー予測法の開発2009

    • Author(s)
      蝦名鉄平、藤博幸、黒田裕
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      アクティとくしま(徳島県)
    • Year and Date
      2009-10-31
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] 短い溶解度向上ペプチドタグ(SEPタグ)による新規封入体形成抑制法の開発2009

    • Author(s)
      石原謙一郎, 惣谷志保里, 黒田裕
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2009-12-10
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] 最適化された記述子群を用いたドメインリンカー予測法の開発2009

    • Author(s)
      蝦名鉄平、藤博幸、黒田裕
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      アクティとくしま(徳島県)
    • Year and Date
      2009-10-31
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] Further Simplification of the BPTI Sequence : Minimum Information for Specifying a Native Protein Structure2009

    • Author(s)
      Kuroda Y, Islam M M, Sohya S, Ncguchi K, Yohda M
    • Organizer
      第2回日韓生体分子科学セミナー「実験とシミュレーション」
    • Place of Presentation
      名古屋大学(愛知県)
    • Year and Date
      2009-12-22
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] 短い溶解度向上ペプチドタグ(SEPタグ)による新規封入体形成抑制法の開発2009

    • Author(s)
      石原謙一郎, 惣谷志保里, 黒田裕
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2009-12-10
    • Data Source
      KAKENHI-PUBLICLY-21107505
  • [Presentation] 熱力学に基づいたタンパク質溶解度計算法の開発及びその細胞内凝集形成の防止法への応用 ワークショップ2009

    • Author(s)
      黒田裕
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      熊本全日空ホテルニユースカイ(熊本県)
    • Year and Date
      2009-05-21
    • Data Source
      KAKENHI-PROJECT-21300110
  • [Presentation] Accurate domain linker prediction by Support Vector Machine2008

    • Author(s)
      T., Ebina, H., Toh, Y., Kuroda
    • Organizer
      Joint 4th Asian Oceania Human Proteome Organization and Pacific Rim International Conference on Protein Science
    • Place of Presentation
      Cairns (Australia)
    • Year and Date
      2008-06-23
    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] Accurate domain linker prediction by Support Vector Machine2008

    • Author(s)
      Ebina, T., Toh, H., and Kuroda, Y.
    • Organizer
      Joint 4th AOHUPO(Asian Oceania Human Proteome Organization)and PRICPS(Pacific Rim International Conference on Protein Science)
    • Place of Presentation
      ケアンズ(オーストラリア)
    • Year and Date
      2008-06-23
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] 蛋白質構造比較パラメータの開発とその評価2007

    • Author(s)
      矢島龍, 黒田裕
    • Organizer
      第7回蛋白質科学会
    • Place of Presentation
      仙台国際センター
    • Year and Date
      2007-05-26
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] MDシミュレーションによるGFP変異体のトラジェクトリ解析2007

    • Author(s)
      小林貴幸、上岡哲矢、朱田梨恵、養王田正文、黒田裕
    • Organizer
      日本生物物理学会第45回年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-22
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] 短い溶解度向上ペプチドによる新規封入体抑制法の開発2007

    • Author(s)
      泉川直重、細岡亜沙美、惣谷志保里、黒田裕
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-14
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] Analysis of disorder regions for functional domain2007

    • Author(s)
      S., Hirose, Y., Kuroda, S., Kanai, T., Noguchi
    • Organizer
      The 7Th Annual Meeting of the Protein Science Society of Japan
    • Place of Presentation
      Sendai
    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] Development and evaluation of parameters for protein structural comparison2007

    • Author(s)
      R., Yajima, Y., Kuroda
    • Organizer
      The 7Th Annual Meeting of the Protein Science Society of Japan
    • Place of Presentation
      Sendai
    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] 蛋白質構造アライメントのための構造指標の統計的評価法2007

    • Author(s)
      矢島龍、黒田裕
    • Organizer
      日本生物物理学会第45回年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-21
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] Loop legth dependent SVM prediction of domain linkers2007

    • Author(s)
      T., Ebina, H., Toh, Y., Kuroda
    • Organizer
      The 45Th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] Trajectory analysis of GFP mutant by Molecular Dynamics Simulation2007

    • Author(s)
      T., Kobayashi, Y., Miyata, M., Yohda, Y.,Kuroda
    • Organizer
      The 7Th Annual Meeting of the Protein Science Society of Japan
    • Place of Presentation
      Sendai
    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] MDシュミレーションによるGFP変異体のトラジェクトリ解析2007

    • Author(s)
      小林貴幸、上岡哲矢、朱田梨恵、養王田正文、黒田裕
    • Organizer
      日本生物物理学会第45回年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-22
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] Analysis of internal and external motion in protein structure2007

    • Author(s)
      S., Hirose K., Yokota Y., Kuroda H., Wako S., Kanai T., Noguchi
    • Organizer
      The 2007 Annual Conference of Japanese Society for Bioinformatics
    • Place of Presentation
      Tokyo
    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] Analysis of internal and external motion in protein structure2007

    • Author(s)
      Hirose S, Yokota K, Kuroda Y, Wako H, Kanai S, and Noguchi T.
    • Organizer
      JSBi2007日本バイオインフォマティクス学会年会
    • Place of Presentation
      日本科学未来館(台場)
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] アミノ酸配列から蛋白質の構造的揺らぎ領域の予測2007

    • Author(s)
      廣瀬修一、横田恭宜、黒田裕、輪湖博、金井理、野口保
    • Organizer
      日本生物物理学会第45回年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-21
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] Statistical analysis structural descriptors for efficient structural alignment2007

    • Author(s)
      R., Yajima, Y., Kuroda
    • Organizer
      The 45Th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] MDシミュレーションを用いたGFP変異体のトラジェクトリ解析2007

    • Author(s)
      小林貴幸, 宮田裕介, 養王田正文, 黒田裕
    • Organizer
      第7回蛋白質科学会
    • Place of Presentation
      仙台国際センター
    • Year and Date
      2007-05-24
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] Prediction of protein structural flexibility from an amino acid sequence2007

    • Author(s)
      S., Hirose, K., Yokota, Y., Kuroda, H., Wako, S., Kanai, T., Noguchi
    • Organizer
      The 45Th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] ループ長依存性を利用したSVMによるドメインリンカー予測法の開発2007

    • Author(s)
      蛯名鉄平、藤博幸、黒田裕
    • Organizer
      日本生物物理学会第45回年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-21
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] タンパク質機能ドメインに対するdisorder領域の解析2007

    • Author(s)
      廣瀬修一、黒田裕、金井理、野口保
    • Organizer
      第7回蛋白質科学会
    • Place of Presentation
      仙台国際センター
    • Year and Date
      2007-05-26
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] Gaussiaルシフェェラーゼの発現系の構築2007

    • Author(s)
      田輪みな子、惣谷志保里、泉川直重、養王田正文、黒田裕
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-14
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] ループ長依存性を利用したSVWによるドメインリンカー予測法の開発2007

    • Author(s)
      蛯名鉄平、藤博幸、黒田裕
    • Organizer
      日本生物物理学会第45回年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-21
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] Trajectory analysis of GFP mutant by Molecular Dynamics Simulation2007

    • Author(s)
      T., Kobayashi, T., Kamioka, R., Akada, M., Yohda, Y., Kuroda
    • Organizer
      The 45Th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] DOMAIN LINKER PREDICTION USING A SUPPORT VECTOR MACHINE(SVM)2006

    • Author(s)
      Teppei Ebina, Takao Arai, Hiroyuki Toh, Yutaka Kuroda
    • Organizer
      第5回東アジア生物物理シンポジウム・日本生物物理学会第44回年会 合同会議
    • Place of Presentation
      沖縄コンベンションセンター
    • Year and Date
      2006-11-12
    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] Domain linker prediction using a support vector machine (SVM)2006

    • Author(s)
      T., Ebina, T., Arai, H., Toh, Y., Kuroda
    • Organizer
      Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Okinawa
    • Year and Date
      2006-11-26
    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-18500225
  • [Presentation] Analysis of Protein Aggregation by using Dynamic Light Scattering and Static Light Scattering Techniques

    • Author(s)
      Md. Golam Kabir、Tamotsu Zako、Mizuo Maeda、Yutaka Kuroda
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜/横浜産貿ホールマリネリア(神奈川県・横浜市)
    • Year and Date
      2014-06-25 – 2014-06-27
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] 疎水性・親水性モデルを用いらないタンパク質溶解性の解析

    • Author(s)
      黒田 裕
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜/横浜産貿ホールマリネリア(神奈川県・横浜市)
    • Year and Date
      2014-06-25 – 2014-06-27
    • Invited
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] VanXの溶菌活性を用いた新規スクリーニング法の開発

    • Author(s)
      呉 楠、上岡 哲矢、黒田 裕
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜/横浜産貿ホールマリネリア(神奈川県・横浜市)
    • Year and Date
      2014-06-25 – 2014-06-27
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] Biophysical analysis of protein aggregation kinetics using Solubility Controlling Peptide( SCP) tags

    • Author(s)
      Mohammad M Islam、Alam M Khan、黒田 裕
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜/横浜産貿ホールマリネリア(神奈川県・横浜市)
    • Year and Date
      2014-06-25 – 2014-06-27
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] Analysis and control of amorphous protein aggregation using short peptide tags

    • Author(s)
      Yutaka Kuroda
    • Organizer
      JSPS Japan Hungary Joint Seminar
    • Place of Presentation
      蛋白質研究所(大阪大学)(大阪府・吹田市)
    • Year and Date
      2014-11-18 – 2014-11-20
    • Invited
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] Structural and thermodynamic study of extensively simplified BPTIs reveals a novel enthalpy stabilization mechanism through multiple alanine substitution

    • Author(s)
      Mohammad Monirul Islam, Keiichi Noguchi, Masafumi Yohda, Shun-ichi Kidokoro, Yutaka Kuroda
    • Organizer
      第37回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜(神奈川県・横浜市)
    • Year and Date
      2014-11-25 – 2014-11-27
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] Analysis of protein crystallization using short Solubility Controlling Peptide tags

    • Author(s)
      黒田裕、Mohammad M Islam
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道札幌コンベンションセンター(北海道・札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] 全原子MDシミュレーションによるアラニンスキャニング変異を導入したアミロイド形成ペプチドの凝集解析

    • Author(s)
      小須田 慧司, 末永 敦, 佐藤 雄士, 泰地 真弘人, 黒田 裕
    • Organizer
      第37回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜(神奈川県・横浜市)
    • Year and Date
      2014-11-25 – 2014-11-27
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] X-ray crystallography and ELISA interaction studies reveal the sero-specificity in dengue virus

    • Author(s)
      Manjiri Ravindra Kulkarni, Monirul M. Islam, Montasir Elahi, Nobutaka Numoto, Nobutoshi Ito, Yutaka Kuroda
    • Organizer
      第37回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜(神奈川県・横浜市)
    • Year and Date
      2014-11-25 – 2014-11-27
    • Data Source
      KAKENHI-PROJECT-26560432
  • [Presentation] 複数ペプチドの全原子分子動力学シミュレーションを用いたアミロイド形成機構の解析

    • Author(s)
      小須田慧司, 末永敦, 泰地真弘人, 黒田裕
    • Organizer
      第4回日本生物物理学会関東支部会
    • Place of Presentation
      日本大学文理学部(東京都・世田谷区)
    • Year and Date
      2015-03-09 – 2015-03-10
    • Data Source
      KAKENHI-PROJECT-26560432
  • 1.  TOH Hiroyuki (70192656)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 16 results
  • 2.  Nakamura Chikashi (40357661)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 3.  山岸 彩奈 (00778293)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 4.  長崎 晃 (30392640)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 5.  竹下 大二郎 (80613265)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 6.  TAMBI RICHA
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 12 results
  • 7.  VELMURUGAN PUNITHA
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 15 results
  • 8.  城戸 俊一
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 9.  中村 成芳
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 10.  TOKMAKOV A・A
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 11.  養王田 正文
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 12.  小林 直宏
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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