Jung Jaewoon 鄭載運

Researcher Number	10554701
Other IDs
Affiliation (Current)	2025: 国立研究開発法人理化学研究所, 開拓研究所, 専任技師
Affiliation (based on the past Project Information) *help	2021 – 2024: 国立研究開発法人理化学研究所, 開拓研究本部, 専任技師
Review Section/Research Field	Except Principal Investigator Transformative Research Areas, Section (III)
Keywords	Except Principal Investigator 長鎖ノンコーディングRNA / Hero蛋白質 / 液液相分離 / 天然変性蛋白質 / 分子動力学シミュレーション

非ドメイン型バイオポリマーの分子動力学計算
- Principal Investigator
  
  依田隆夫
- Project Period (FY)
  2021 – 2025
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  Nagahama Institute of Bio-Science and Technology

All 2024 2023 2022

All Journal Article Presentation

[Journal Article] GENESIS CGDYN: large-scale coarse-grained MD simulation with dynamic load balancing for heterogeneous biomolecular systems2024
- Author(s)
  Jung Jaewoon、Tan Cheng、Sugita Yuji
- Journal Title
  
  Nature Communications
  
  Volume: 15 Issue: 1 Pages: 3370-3370
- DOI
  10.1038/s41467-024-47654-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-21H05249, KAKENHI-PLANNED-21H05282, KAKENHI-PROJECT-19H05645
[Journal Article] Acceleration of generalized replica exchange with solute tempering simulations of large biological systems on massively parallel supercomputer2023
- Author(s)
  Jung Jaewoon、Kobayashi Chigusa、Sugita Yuji
- Journal Title
  
  Journal of Computational Chemistry
  
  Volume: - Issue: 20 Pages: 1740-1749
- DOI
  10.1002/jcc.27124
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21H05282, KAKENHI-PLANNED-21H05249, KAKENHI-PROJECT-19H05645
[Journal Article] Implementation of residue-level coarse-grained models I GENESIS for large-scale molecular dynamics simulations2022
- Author(s)
  Cheng Tan, Jaewoon Jung, Chigusa Kobayashi, Diego Ugarte, Shoji Takada, Yuji Sugita
- Journal Title
  
  PLoS Comp. Biol.
  
  Volume: 18 Issue: 4 Pages: e1009578-e1009578
- DOI
  10.1371/journal.pcbi.1009578
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-21H05249, KAKENHI-PLANNED-21H05282, KAKENHI-PROJECT-19H05645
[Journal Article] Use of multistate Bennett acceptance ratio method for free-energy calculations from enhanced sampling and free-energy perturbation2022
- Author(s)
  Matsunaga Yasuhiro、Kamiya Motoshi、Oshima Hiraku、Jung Jaewoon、Ito Shingo、Sugita Yuji
- Journal Title
  
  Biophysical Reviews
  
  Volume: 14 Issue: 6 Pages: 1503-1512
- DOI
  10.1007/s12551-022-01030-9
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-21H05282, KAKENHI-PROJECT-19H05645, KAKENHI-PROJECT-20K21380
[Presentation] 人工設計ペプチドイオンチャネルの構造ダイナミクス2023
- Author(s)
  新津藍, Jaewoon Jung, 杉田有治
- Organizer
  第23回日本蛋白質科学会年会
- Invited
- Data Source
  KAKENHI-PLANNED-21H05282
[Presentation] Acceleration of residue-level coarse-grained molecular dynamics by efficient parallelization2023
- Author(s)
  J. Jung, C. Tan, C. Kobayashi, D. Ugarte, Y. Sugita
- Organizer
  The 67th Biophysical Society Annual Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-21H05282
[Presentation] Development of GENESIS on Fugaku for Large-Scale MD Simulations2023
- Author(s)
  Jaewoon Jung, Yuji Sugita
- Organizer
  Workshop of Multi-scale Molecular Dynamics Simulation and Machine Learning of Biomolecular Systems
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-21H05282
[Presentation] Development of GENESIS for large-scale molecular dynamics2023
- Author(s)
  Jaewoon Jung, Yuji Sugita
- Organizer
  CJK-WTCC VI
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-21H05282
[Presentation] Acceleration of gREST simulations of large biological systems on massively parallel computers2022
- Author(s)
  J. Jung, C. Kobayashi, S. Sugita
- Organizer
  第36回分子シミュレーション討論会
- Data Source
  KAKENHI-PLANNED-21H05282
[Presentation] Acceleration of residue-level coarse-grained molecular dynamics by new development of parallelization2022
- Author(s)
  J. Jung, C. Tan, C. Kobayashi, D. Ugarte, Y. Sugita
- Organizer
  第60回日本生物物理学会年会
- Data Source
  KAKENHI-PLANNED-21H05282

1. 依田隆夫 (50367900)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. 譚丞 (20865886)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
3. 杉田有治

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results

Jung Jaewoon 鄭 載運

Research Projects

Research Products

Co-Researchers

非ドメイン型バイオポリマーの分子動力学計算

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] GENESIS CGDYN: large-scale coarse-grained MD simulation with dynamic load balancing for heterogeneous biomolecular systems2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Acceleration of generalized replica exchange with solute tempering simulations of large biological systems on massively parallel supercomputer2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Implementation of residue-level coarse-grained models I GENESIS for large-scale molecular dynamics simulations2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Use of multistate Bennett acceptance ratio method for free-energy calculations from enhanced sampling and free-energy perturbation2022

Author(s)

Journal Title

DOI

Data Source

[Presentation] 人工設計ペプチドイオンチャネルの構造ダイナミクス2023

Author(s)

Organizer

Data Source

[Presentation] Acceleration of residue-level coarse-grained molecular dynamics by efficient parallelization2023

Author(s)

Organizer

Data Source

[Presentation] Development of GENESIS on Fugaku for Large-Scale MD Simulations2023

Author(s)

Organizer

Data Source

[Presentation] Development of GENESIS for large-scale molecular dynamics2023

Author(s)

Organizer

Data Source

[Presentation] Acceleration of gREST simulations of large biological systems on massively parallel computers2022

Author(s)

Organizer

Data Source

[Presentation] Acceleration of residue-level coarse-grained molecular dynamics by new development of parallelization2022

Author(s)

Organizer

Data Source

Jung Jaewoon 鄭載運