SHIMIZU Kentaro 清水健太郎

Researcher Number	10742629
Other IDs
Affiliation *help	2016 – 2018 : 横浜市立大学, 木原生物学研究所, 客員教授 2016 : チューリッヒ大学, 進化生物環境学研究所, 教授
Review Section/Research Field	Except Principal Investigator Applied biochemistry / Biological Sciences
Keywords	Principal Investigator トランスクリプトーム / 植物 Except Principal Investigator ハイブリッドゲノム / 全ゲノム関連解析 / ゲノム / 植物 / 有性生殖 / 機械学習 / シロイヌナズナ / バイオインフォマティクス

季節性のない熱帯雨林での時系列トランスクリプトームによる環境認識・記憶の解析Principal InvestigatorOngoing
- Principal Investigator
  
  清水健太郎
- Project Period (FY)
  2018 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Research Institution
  Yokohama City University
ハイブリッド新種ゲノムが有するオミクス適応能の包括的な解析Ongoing
- Principal Investigator
  
  瀬々潤
- Project Period (FY)
  2016 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  National Institute of Advanced Industrial Science and Technology
Molecular dissection of correlative gene systems in plant sexual reproduction
- Principal Investigator
  
  TAKAYAMA Seiji
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Applied biochemistry
- Research Institution
  The University of Tokyo
  Nara Institute of Science and Technology

All 2017 2016

All Journal Article

[Journal Article] Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology2017
- Author(s)
  Briskine RV, Paape T, Shimizu-Inatsugi R, Nishiyama T, Akama S, Sese J, Shimizu KK
- Journal Title
  
  Molecular Ecology Resources
  
  Volume : 未定
- DOI
  10.1111/1755-0998.12604
- Peer Reviewed / Open Access / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-16H06469
[Journal Article] Genetic diversity of two tropical tree species of the Dipterocarpaceae following logging and restoration in Borneo: high genetic diversity in plots with high species diversity2017
- Author(s)
  Ang CC, O’brien MJ, Ng KKS, Lee PC, Hector A, Schmid B, Shimizu KK
- Journal Title
  
  Plant Ecology & Diversity
  
  Volume : 9 Pages : 459-469
- DOI
  10.1080/17550874.2016.1270363
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-16H06469
[Journal Article] Plant adaptive radiation mediated by polyploid plasticity in transcriptomes2017
- Author(s)
  Shimizu-Inatsugi R, Terada A, Hirose K, Kudos H, Sese J, Shimizu KK
- Journal Title
  
  Molecular Ecology
  
  Volume : 26 Pages : 193-207
- DOI
  10.1111/mec.13738
- Peer Reviewed / Open Access / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-16H06469
[Journal Article] The population genomic signature of environmental selection with gene flow in an ecologically divergent tree species Metrosideros polymorpha (Myrtaceae)2017
- Author(s)
  Izuno A,Kitayama K, Onoda Y, Tsuji Y,Hatakeyama M, Nagano AJ, Honjo MN, Shimizu-Inatsugi R, Kudoh H, Shimizu KK, Isagi Y
- Journal Title
  
  Molecular Ecology
  
  Volume : 26 Pages : 1515-1532
- DOI
  10.1111/mec.14016
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-16H06469, KAKENHI-PROJECT-26711025, KAKENHI-PROJECT-15KK0255
[Journal Article] Positional bias in variant calls against draft reference assemblies2017
- Author(s)
  Briskine RV, Shimizu KK
- Journal Title
  
  BMC Genomics
  
  Volume : 18 Pages : 263-263
- DOI
  10.1186/s12864-017-3637-2
- Peer Reviewed / Open Access / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-16H06469
[Journal Article] Conserved but attenuated parental gene expression in allopolyploids: constitutive zinc hyperaccumulation in the allotetraploid Arabidopsis kamchatica.2016
- Author(s)
  Paape T, Hatakeyama M, Shimizu-Inatsugi R, Cereghetti T, Onda Y, Kenta T, Sees J, Shimizu KK
- Journal Title
  
  Molecular Biology and Evolution
  
  Volume : 33 Pages : 2781-2800
- DOI
  10.1093/molbev/msw141
- Peer Reviewed / Int'l Joint Research / Open Access / Acknowledgement Compliant
- Data Source
  KAKENHI-PLANNED-16H06469, KAKENHI-PROJECT-15H02670
[Journal Article] Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism.2016
- Author(s)
  Novikova PY, Hohmann N, Nizhynska V, Tsuchimatsu T, Ali J, Muir G, Guggisberg A, Paape T, Schmid K, Fedorenko OM, Holm S, Sll T, Schltterer C, Marhold K, Widmer A, Sese J, Shimizu KK, Weigel D, Krmer U, Koch MA, Nordborg M
- Journal Title
  
  Nature Genetics
  
  Volume : 48 Pages : 1077-1082
- DOI
  10.1038/ng.3617
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-16H06469, KAKENHI-PROJECT-15K18583

1. TAKAYAMA Seiji (70273836)

# of Collaborated Projects : 1results

# of Collaborated Products : 0results
2. WADA Yuko (50379541)

# of Collaborated Projects : 1results

# of Collaborated Products : 0results
3. FUJII Sota (90716713)

# of Collaborated Projects : 1results

# of Collaborated Products : 0results
4. MURASE Koji (50467693)

# of Collaborated Projects : 1results

# of Collaborated Products : 0results
5. TSUCHIMATSU Takashi (60740107)

# of Collaborated Projects : 1results

# of Collaborated Products : 1results
6. 瀬々潤 (40361539)

# of Collaborated Projects : 1results

# of Collaborated Products : 3results
7. Onoda Yusuke

# of Collaborated Projects : 0results

# of Collaborated Products : 1results
8. 恩田義彦

# of Collaborated Projects : 0results

# of Collaborated Products : 1results
9. 田中章司郎

# of Collaborated Projects : 0results

# of Collaborated Products : 1results

SHIMIZU Kentaro 清水 健太郎

Research Projects

Research Products

Co-Researchers

季節性のない熱帯雨林での時系列トランスクリプトームによる環境認識・記憶の解析Principal InvestigatorOngoing

Principal Investigator

Project Period (FY)

Research Category

Research Institution

ハイブリッド新種ゲノムが有するオミクス適応能の包括的な解析Ongoing

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Molecular dissection of correlative gene systems in plant sexual reproduction

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Genetic diversity of two tropical tree species of the Dipterocarpaceae following logging and restoration in Borneo: high genetic diversity in plots with high species diversity2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Plant adaptive radiation mediated by polyploid plasticity in transcriptomes2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The population genomic signature of environmental selection with gene flow in an ecologically divergent tree species Metrosideros polymorpha (Myrtaceae)2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Positional bias in variant calls against draft reference assemblies2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Conserved but attenuated parental gene expression in allopolyploids: constitutive zinc hyperaccumulation in the allotetraploid Arabidopsis kamchatica.2016

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism.2016

Author(s)

Journal Title

DOI

Data Source

SHIMIZU Kentaro 清水健太郎