Matsui Motomu 松井求

Researcher Number	10803728
Other IDs	https://orcid.org/0000-0001-5077-4977
Affiliation (Current)	2025: 京都大学, 化学研究所, 助教
Affiliation (based on the past Project Information) *help	2025: 京都大学, 化学研究所, 助教 2022 – 2024: 東京大学, 大学院新領域創成科学研究科, 特任助教 2019 – 2021: 東京大学, 大学院理学系研究科(理学部), 助教
Review Section/Research Field	Principal Investigator Complex systems Except Principal Investigator Basic Section 39040:Plant protection science-related / Medium-sized Section 41:Agricultural economics and rural sociology, agricultural engineering, and related fields / Basic Section 41050:Environmental agriculture-related / Complex systems
Keywords	Principal Investigator 微生物相互作用 / 微生物形態 / 窒素循環 / 微生物生態学 / ポストコッホ生態 / ネットワーク / メタゲノム解析 / 微生物生態 / ネットワーク解析 / 機能インフォマティクス … More / データベース / ポストコッホ生態系 / 微生物ダークマター / バイオインフォマティクス … More Except Principal Investigator 寄生と共生 / バイオインフォマティクス / ゲノム / 進化 / 植物微生物相互作用 / 深層土 / 微生物群集 / 持続可能性 / 窒素・リン・水循環 / 混作 / 熱帯農業生態系 / 生態系サービス / 土壌微生物機能 / 土壌炭素隔離 / 微生物生態 Less

進化的特徴へのゲノム情報解析とAI技術を用いた病原性・共生遺伝子群の発見法の開発
- Principal Investigator
  
  青木誠志郎
- Project Period (FY)
  2025 – 2029
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 39040:Plant protection science-related
- Research Institution
  The University of Tokyo
熱帯農地における生物的炭素隔離の実現に必要な機序解明と活用
- Principal Investigator
  
  杉原創
- Project Period (FY)
  2024 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 41050:Environmental agriculture-related
- Research Institution
  Tokyo University of Agriculture and Technology
半乾燥熱帯畑作地における混作技術革新：根圏微生物機能と深層土水の活用
- Principal Investigator
  
  杉原創
- Project Period (FY)
  2023 – 2026
- Research Category
  
  Fund for the Promotion of Joint International Research (International Collaborative Research)
- Review Section
  
  Medium-sized Section 41:Agricultural economics and rural sociology, agricultural engineering, and related fields
- Research Institution
  Tokyo University of Agriculture and Technology
Post-Koch Ecology - The next-era microbial ecology
- Principal Investigator
  
  高谷直樹
- Project Period (FY)
  2019 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  University of Tsukuba
Post-Koch Ecosystem revealed by Functional informaticsPrincipal Investigator
- Principal Investigator
  
  Matsui Motomu
- Project Period (FY)
  2019 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  The University of Tokyo

All 2024 2023 2022 2021 2020 2019

All Journal Article Presentation

[Journal Article] NeTaGFT: A similarity network‐based method for trait analysis2023
- Author(s)
  Matsumoto Hirotaka、Matsui Motomu
- Journal Title
  
  Methods in Ecology and Evolution
  
  Volume: 15 Issue: 1 Pages: 153-163
- DOI
  10.1111/2041-210x.14251
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K17858, KAKENHI-PLANNED-19H05688
[Journal Article] バイオインフォマティクスでポストコッホ生態系を解き明かす2022
- Author(s)
  松井求
- Journal Title
  
  Japanese Society of Microbial Ecology
  
  Volume: 37 Issue: 1 Pages: 37-39
- DOI
  10.20709/jsmeja.37.1_37
- ISSN
  2424-1989
- Year and Date
  2022-03-01
- Language
  Japanese
- Open Access
- Data Source
  KAKENHI-PLANNED-19H05688
[Journal Article] Lifestyle Evolution Analysis by Binary-State Speciation and Extinction (BiSSE) Model2022
- Author(s)
  Suzuki Takao K.、Matsui Motomu、Sriswasdi Sira、Iwasaki Wataru
- Journal Title
  
  Methods in Molecular Biology
  
  Volume: 2569 Pages: 327-342
- DOI
  10.1007/978-1-0716-2691-7_16
- ISBN
  9781071626900, 9781071626917
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-19H05688
[Journal Article] Nondestructive microbial discrimination using single-cell Raman spectra and random forest machine learning algorithm2022
- Author(s)
  Kanno Nanako、Kato Shingo、Ohkuma Moriya、Matsui Motomu、Iwasaki Wataru、Shigeto Shinsuke
- Journal Title
  
  STAR Protocols
  
  Volume: 3 Issue: 4 Pages: 101812-101812
- DOI
  10.1016/j.xpro.2022.101812
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-19H05681, KAKENHI-PLANNED-19H05688, KAKENHI-PLANNED-19H05689
[Journal Article] Machine learning-assisted single-cell Raman fingerprinting for in situ and nondestructive classification of prokaryotes2021
- Author(s)
  Nanako Kanno、Shingo Kato、Moriya Ohkuma、Motomu Matsui、Wataru Iwasaki、Shinsuke Shigeto
- Journal Title
  
  iScience
  
  Volume: 24 Issue: 9 Pages: 102975-102975
- DOI
  10.1016/j.isci.2021.102975
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-19H05681, KAKENHI-PLANNED-19H05688, KAKENHI-PLANNED-19H05689
[Journal Article] Frontier of Inferring Phylogenies2021
- Author(s)
  松井求
- Journal Title
  
  JSBi Bioinformatics Review
  
  Volume: 2 Issue: 1 Pages: 30-57
- DOI
  10.11234/jsbibr.2021.7
- NAID
  130008101617
- ISSN
  2435-7022
- Language
  Japanese
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-19H05688
[Journal Article] Graph Splitting: A Graph-Based Approach for Superfamily-Scale Phylogenetic Tree Reconstruction2019
- Author(s)
  Matsui Motomu、Iwasaki Wataru
- Journal Title
  
  Systematic Biology
  
  Volume: 69 Pages: 265-279
- DOI
  10.1093/sysbio/syz049
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06154, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-19H05688
[Presentation] Reconstructing Phylogenetic Reconstruction2024
- Author(s)
  Motomu Matsui
- Organizer
  DATA SCIENCE FOR GENOME DYNAMICS
- Invited
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] Tree of Lifeは完成できるか?2023
- Author(s)
  松井求
- Organizer
  IIBMP2023
- Invited
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] 環境微生物研究におけるバイオインフォマティクス活用法2023
- Author(s)
  松井求
- Organizer
  アグリバイオ
- Invited
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] バイオインフォマティクスが駆動する微生物科学2023
- Author(s)
  松井求
- Organizer
  微生物科学イノベーション特論II
- Invited
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] 分子系統学の進化可能性を考える2023
- Author(s)
  松井求
- Organizer
  Intelligence and Cultural Evolution Theoryワークショップ
- Invited
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] ポストコッホ生態学が解き明かす輪作に呼応した微生物動態2022
- Author(s)
  松井求、明石基洋、鈴木誉保、藤吉真生、土肥裕希、森ヶ崎進、林久喜、高谷直樹、岩崎渉
- Organizer
  第35回日本微生物生態学会
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] シン・近隣結合法：PANJEP法が問い直す系統解析の常識2022
- Author(s)
  松井求、岩崎渉
- Organizer
  第24回日本進化学会
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] ポストコッホ機能生態学が目指すもの2022
- Author(s)
  松井求
- Organizer
  ポストコッホ生態研究集会
- Invited
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] 系統樹推定の常識を問い直す2022
- Author(s)
  松井求
- Organizer
  国立遺伝学研究所研究集会
- Invited
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] Bac2Feature：系統情報を利用した微生物の形質推定パイプライン2022
- Author(s)
  藤吉真生、鈴木誉保、松井求、岩崎渉
- Organizer
  第24回日本進化学会
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] 未培養微生物研究におけるバイオインフォマティクスの役割2022
- Author(s)
  松井求
- Organizer
  日本生物工学会バイオインフォマティクス相談部会第五回講演会
- Invited
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] Trait-based アプローチでせまる細菌の群集構造とその安定性2022
- Author(s)
  鈴木誉保、松井求、森ヶ崎進、大津厳生、土肥裕希、河野祐介、林久喜、高谷直樹、岩崎渉
- Organizer
  第35回日本微生物生態学会
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] 微生物群集は普遍的に極めて安定な形質組成を持つ2022
- Author(s)
  鈴木誉保、松井求、森ヶ崎進、大津厳生、土肥裕希、林久喜、高谷直樹、岩崎渉
- Organizer
  第60回日本生物物理学会
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] 機能インフォマティクスが解き明かすポストコッホ生態系2022
- Author(s)
  松井求、岩崎渉
- Organizer
  新学術領域「ポストコッホ生態」第4回領域会議
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] Bac2Feature による微生物群集の表現型解析2022
- Author(s)
  藤吉真生、鈴木誉保、松井求、岩崎渉
- Organizer
  第35回日本微生物生態学会
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] 施肥条件の異なる農地土壌の時系列ショットガンメタゲノム解析2021
- Author(s)
  Motohiro Akashi, Motomu Matsui, Susumu Morigasaki, Hisayoshi Hayashi, Naoki Takaya, and Wataru Iwasaki
- Organizer
  日本微生物生態学会
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] バイオインフォマティクスが解き明かすポストコッホ生態系2021
- Author(s)
  Motomu Matsui
- Organizer
  IIBMP2021
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] Metabolite analysis and machine learning-assisted discrimination of archaea and bacteria using minimally invasive single-cell Raman microspectroscopy2021
- Author(s)
  Shinsuke Shigeto, Nanako Kanno, Shingo Kato, Motomu Matsui
- Organizer
  Japan Geoscience Union Meeting 2021
- Invited
- Data Source
  KAKENHI-ORGANIZER-19H05679
[Presentation] 機能インフォマティクスが解き明かすポストコッホ生態系2021
- Author(s)
  Motomu Matsui and Wataru Iwasaki
- Organizer
  新学術領域「ポストコッホ生態」第3回領域会議
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] Nondestructive prokaryotic species discrimination using single-cell Raman spectroscopy and machine learning2021
- Author(s)
  Nanako Kanno, Shingo Kato, Motomu Matsui and Shinsuke Shigeto
- Organizer
  日本農芸化学会
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] Machine learning-assisted single-cell Raman microspectroscopy for in situ prokaryotic classification in complex microbial populations2021
- Author(s)
  Shinsuke Shigeto, Nanako Kanno, Shingo Kato, Motomu Matsui
- Organizer
  11th International Conference on Advanced Vibrational Spectroscopy
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-19H05679
[Presentation] アラインメントで問い直す系統樹推定の常識：GS法とNJ法2021
- Author(s)
  Motomu Matsui
- Organizer
  第23回日本進化学会
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] Graph Splitting: A Graph-Based Approach for Superfamily-Scale Phylogenetic Tree Reconstruction2020
- Author(s)
  Motomu Matsui and Wataru Iwasaki
- Organizer
  IIBMP2020
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] ウイルスの初期進化と高速進化を解き明かす2020
- Author(s)
  Motomu Matsui
- Organizer
  第43回日本分子生物学会
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] 機能インフォマティクスが解き明かすポストコッホ生態系2020
- Author(s)
  Motomu Matsui and Wataru Iwasaki
- Organizer
  新学術領域「ポストコッホ生態」第2回領域会議
- Data Source
  KAKENHI-PLANNED-19H05688
[Presentation] グラフに基づく新たな系統解析手法で隠れた遠距離進化を発掘する2019
- Author(s)
  Motomu Matsui and Wataru Iwasaki
- Organizer
  第21回日本進化学会
- Data Source
  KAKENHI-PLANNED-19H05688

1. 杉原創 (30594238)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
2. 高谷直樹 (50282322)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 大熊盛也 (10270597)

# of Collaborated Projects: 1 results

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4. 重藤真介 (10756696)

# of Collaborated Projects: 1 results

# of Collaborated Products: 4 results
5. 佐々文洋 (30722681)

# of Collaborated Projects: 1 results

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6. 野村暢彦 (60292520)

# of Collaborated Projects: 1 results

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7. 跡見晴幸 (90243047)

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8. 野尻秀昭 (90272468)

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9. 大西康夫 (90292789)

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10. 中井亮佑 (90637802)

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11. 大津厳生 (60395655)

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12. 岩崎渉 (50545019)

# of Collaborated Projects: 1 results

# of Collaborated Products: 14 results
13. 梅澤有 (50442538)

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14. LYU HAN (20945349)

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15. 安野秀瑛 (80993138)

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16. 斎藤広隆 (70447514)

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17. 柴田誠 (40799607)

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18. 関真由子 (70963453)

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19. 青木誠志郎 (10334301)

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20. 晝間敬 (20714504)

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21. 松本拡高

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Matsui Motomu 松井 求

Research Projects

Research Products

Co-Researchers

進化的特徴へのゲノム情報解析とAI技術を用いた病原性・共生遺伝子群の発見法の開発

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

熱帯農地における生物的炭素隔離の実現に必要な機序解明と活用

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

半乾燥熱帯畑作地における混作技術革新：根圏微生物機能と深層土水の活用

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Post-Koch Ecology - The next-era microbial ecology

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Post-Koch Ecosystem revealed by Functional informaticsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] NeTaGFT: A similarity network‐based method for trait analysis2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] バイオインフォマティクスでポストコッホ生態系を解き明かす2022

Author(s)

Journal Title

DOI

ISSN

Year and Date

Language

Data Source

[Journal Article] Lifestyle Evolution Analysis by Binary-State Speciation and Extinction (BiSSE) Model2022

Author(s)

Journal Title

DOI

ISBN

Data Source

[Journal Article] Nondestructive microbial discrimination using single-cell Raman spectra and random forest machine learning algorithm2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Machine learning-assisted single-cell Raman fingerprinting for in situ and nondestructive classification of prokaryotes2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Frontier of Inferring Phylogenies2021

Author(s)

Journal Title

DOI

NAID

ISSN

Language

Data Source

[Journal Article] Graph Splitting: A Graph-Based Approach for Superfamily-Scale Phylogenetic Tree Reconstruction2019

Author(s)

Journal Title

DOI

Data Source

[Presentation] Reconstructing Phylogenetic Reconstruction2024

Author(s)

Organizer

Data Source

Matsui Motomu 松井求

[Presentation] Trait-based アプローチでせまる細菌の群集構造とその安定性2022