Ishii Eiji 石井英治

Researcher Number	10835698
Other IDs
Affiliation (Current)	2025: 大阪大学, 微生物病研究所, 助教
Affiliation (based on the past Project Information) *help	2021 – 2023: 大阪大学, 微生物病研究所, 助教 2020: 京都大学, ウイルス・再生医科学研究所, 研究員
Review Section/Research Field	Principal Investigator Basic Section 43010:Molecular biology-related / Basic Section 43030:Functional biochemistry-related
Keywords	Principal Investigator lnc RNA / Vibrio parahaemolyticus / non-coding RNA / 機能性RNA / べん毛 / 腸炎ビブリオ / lncRNA / Sec secretion system / SRP / 細胞内局在 … More / RNaseE / ribonuclease / 遺伝子発現制御 / RNA / 新生ポリペプチド鎖 / RNA分解 / ビブリオ菌 / 遺伝子発現 / RNase / 翻訳アレスト Less

細菌における新規lncRNAの生化学的機能解析と生物学的役割の理解Principal Investigator
- Principal Investigator
  
  石井英治
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43010:Molecular biology-related
- Research Institution
  Osaka University
Mechanisms and physiological significance of mRNA degradation associated with spatial localization of nascent polypeptide chainsPrincipal Investigator
- Principal Investigator
  
  Ishii Eiji
- Project Period (FY)
  2020 – 2023
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 43030:Functional biochemistry-related
- Research Institution
  Osaka University
  Kyoto University

All 2024 2023 2022 2021

All Journal Article Presentation

[Journal Article] The read-through transcription-mediated autoactivation circuit for virulence regulator expression drives robust type III secretion system 2 expression in Vibrio parahaemolyticus2024
- Author(s)
  Anggramukti Dhira Saraswati、Ishii Eiji、Pratama Andre、Al Kadi Mohamad、Iida Tetsuya、Kodama Toshio、Matsuda Shigeaki
- Journal Title
  
  PLOS Pathogens
  
  Volume: 20 Issue: 3 Pages: e1012094-e1012094
- DOI
  10.1371/journal.ppat.1012094
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K14521, KAKENHI-PROJECT-23K05637, KAKENHI-PROJECT-23K06529, KAKENHI-PROJECT-20K15748
[Journal Article] The Xenogeneic Silencer Histone-Like Nucleoid-Structuring Protein Mediates the Temperature and Salinity-Dependent Regulation of the Type III Secretion System 2 in Vibrio parahaemolyticus2022
- Author(s)
  Pratama A, Ishii E, Kodama T, Iida T and Matsuda S
- Journal Title
  
  Journal of Bacteriology
  
  Volume: 205 Issue: 1
- DOI
  10.1128/jb.00266-22
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K15748, KAKENHI-PROJECT-20K07478
[Journal Article] Direct RNA Sequencing Unfolds the Complex Transcriptome of Vibrio parahaemolyticus2021
- Author(s)
  Al Kadi M, Ishii E, Truong DT, Motooka D, Matsuda S, Iida T, Kodama T, Okuzaki D
- Journal Title
  
  mSystems
  
  Volume: 6 Issue: 6
- DOI
  10.1128/msystems.00996-21
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K07478, KAKENHI-PROJECT-20K15748
[Presentation] 腸炎ビブリオの病原性遺伝子島を制御する転写因子VtrBの遠位プロモーターによる正の自己制御機構の解析2023
- Author(s)
  Dhira Saraswati Anggramukti、石井英治、児玉年央、Andre Pratama、Al kadi Mohamad、飯田哲也、松田重輝
- Organizer
  第19回21世紀大腸菌研究会
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] 腸炎ビブリオの病原性遺伝子島を制御する転写因子VtrBの遠位プロモーターによる正の自己制御機構の解析2023
- Author(s)
  Dhira Saraswati Anggramukti、石井英治、児玉年央、Andre Pratama、Al kadi Mohamad、飯田哲也、松田重輝
- Organizer
  第19回21世紀大腸菌研究会
- Data Source
  KAKENHI-PROJECT-23K05637
[Presentation] Read-through transcription-mediated positive autoregulation of VtrB drives robust type III secretion system 2 expression in Vibrio parahaemolyticus2023
- Author(s)
  Dhira Saraswati Anggramukti, Eiji Ishii, Andre Pratama, Mohamad Al kadi, Tetsuya Iida, Toshio Kodama and Shigeaki Matsuda
- Organizer
  第55回ビブリオシンポジウム
- Data Source
  KAKENHI-PROJECT-23K05637
[Presentation] Single-Cell Analysis Of iPSC-Derived Organoids as Model to Study Host-Pathogen Interaction2023
- Author(s)
  M. Al kadi, M. Ishikawa, S. Matsuda, Y. Liu, S. Sato, E. Ishii, S. Sakakibara, T. Kodama and D. Okuzaki
- Organizer
  第46回分子生物学会年会
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] Read-through transcription-mediated positive autoregulation of VtrB drives robust type III secretion system 2 expression in Vibrio parahaemolyticus2023
- Author(s)
  Dhira Saraswati Anggramukti, Eiji Ishii, Andre Pratama, Mohamad Al kadi, Tetsuya Iida, Toshio Kodama and Shigeaki Matsuda
- Organizer
  第55回ビブリオシンポジウム
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] The regulatory circuit of type III secretion system 2 genes in Vibrio parahaemolyticus2023
- Author(s)
  Dhira Saraswati Anggramukti, Eiji Ishii, Andre Pratama, Mohamad Al kadi, Tetsuya Iida, Toshio Kodama and Shigeaki Matsuda
- Organizer
  57th United States - Japan Cooperative Medical Science Program -Joint Panel Conference on Cholera and Other Bacterial Enteric Infections
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] A positive regulatory loop of a virulence regulator gene linked by read-through transcription ensures pathogenicity in Vibrio parahaemolyticus2023
- Author(s)
  Dhira Saraswati Anggramukti, Eiji Ishii, Andre Pratama, Mohamad Al kadi, Tetsuya Iida, Toshio Kodama and Shigeaki Matsuda
- Organizer
  第76回日本細菌学会関西支部総会
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] The regulatory circuit of type III secretion system 2 genes in Vibrio parahaemolyt2023
- Author(s)
  Dhira Saraswati Anggramukti, Eiji Ishii, Andre Pratama, Mohamad Al kadi, Tetsuya Iida, Toshio Kodama and Shigeaki Matsuda
- Organizer
  57th United States - Japan Cooperative Medical Science Program -Joint Panel Conference on Cholera and Other Bacterial Enteric Infections（国際学会）
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K05637
[Presentation] The regulatory circuit of type III secretion system 2 genes ensures virulence in Vibrio parahaemolyticus2023
- Author(s)
  Dhira Saraswati Anggramukti, Eiji Ishii, Andre Pratama, Mohamad Al kadi, Tetsuya Iida, Toshio Kodama and Shigeaki Matsuda
- Organizer
  第21回あわじ感染と免疫国際フォーラム（国際学会）
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K05637
[Presentation] Single-Cell Analysis Of iPSC-Derived Organoids as Model to Study Host-Pathogen Interaction2023
- Author(s)
  M. Al kadi, M. Ishikawa, S. Matsuda, Y. Liu, S. Sato, E. Ishii, S. Sakakibara, T. Kodama and D. Okuzaki
- Organizer
  第46回分子生物学会年会
- Data Source
  KAKENHI-PROJECT-23K05637
[Presentation] A positive regulatory loop of a virulence regulator gene linked by read-through transcription ensures pathogenicity in Vibrio parahaemolyticus2023
- Author(s)
  Dhira Saraswati Anggramukti, Eiji Ishii, Andre Pratama, Mohamad Al kadi, Tetsuya Iida, Toshio Kodama and Shigeaki Matsuda
- Organizer
  第76回日本細菌学会関西支部総会
- Data Source
  KAKENHI-PROJECT-23K05637
[Presentation] The regulatory circuit of type III secretion system 2 genes ensures virulence in Vibrio parahaemolyticus2023
- Author(s)
  Dhira Saraswati Anggramukti, Eiji Ishii, Andre Pratama, Mohamad Al kadi, Tetsuya Iida, Toshio Kodama and Shigeaki Matsuda
- Organizer
  第21回あわじ感染と免疫国際フォーラム
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] Genome-wide mining of non-coding RNAs in the food-borne pathogen Vibrio parahaemolyticus using direct RNA sequencing2022
- Author(s)
  Mohamad Al kadi, Shigeaki Matsuda, Eiji Ishii, Hiroyuki Terashima, Tetsuya Iida, Daisuke Okuzaki, Toshio Kodama
- Organizer
  第45回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] H-NSによる腸炎ビブリオⅢ型分泌装置2遺伝子群の温度・塩分濃度依存的な発現制御機構2022
- Author(s)
  Andre Pratama, 石井英治、児玉年央、飯田哲也、松田重輝
- Organizer
  第18回21世紀大腸菌研究会
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] Annotation of Bacterial Transcriptome Using Direct RNA Sequencing2022
- Author(s)
  Mohamad Al Kadi, Eiji Ishii, Shigeaki Matsuda, Tetsuya Iida,Toshio Kodama, Daisuke Okuzaki
- Organizer
  第54回ビブリオシンポジウム
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] Xenogeneic silencing-mediated regulation of T3SS2 in Vibrio parahaemolyticus2022
- Author(s)
  Andre Pratama, 石井英治、児玉年央、飯田哲也、松田重輝
- Organizer
  第95回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] H-NS mediates temperature- and salinity-dependent regulation of T3SS2 in Vibrio parahaemolyticus2022
- Author(s)
  Andre Pratama，石井英治，児玉年央，飯田哲也，松田重輝
- Organizer
  第96回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] A global regulator H-NS mediates temperature- and salinity-dependent regulation of type III secretion system 2 in Vibrio parahaemolyticus2022
- Author(s)
  Andre Pratama, Eiji Ishii, Toshio Kodama, Tetsuya Iida, Shigeaki Matsuda
- Organizer
  第54回ビブリオシンポジウム
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] The complex landscape of Vibrio parahaemolyticus transcriptome.2022
- Author(s)
  Mohamad Al Kadi, 石井英治、Dang Tat Truong、元岡大祐、松田重輝、飯田哲也、児玉年央、奥崎大介
- Organizer
  第95回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] A global regulator H-NS mediates temperature- and salinity-dependent regulation of type III secretion system 2 in Vibrio parahaemolyticus2022
- Author(s)
  Andre Pratama, Eiji Ishii, Toshio Kodama, Tetsuya Iida, Shigeaki Matsuda
- Organizer
  第20回あわじ感染と免疫国際フォーラム
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] 翻訳アレストペプチドVemPを介した遺伝子発現制御における転写産物の動態解析2022
- Author(s)
  石井英治、秋山芳展、森博幸
- Organizer
  第45回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] Transcriptome Complexity of Vibrio parahaemolyticus revealed by direct RNA sequencing2022
- Author(s)
  アルカディムハッマド，石井英治，Tat Truong Dang，元岡大祐，松田重輝，飯田哲也，児玉年央，奥崎大介
- Organizer
  第96回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] A global regulator H-NS mediates temperature- and salinity-dependent regulation of type III secretion system 2 in Vibrio parahaemolyticus2022
- Author(s)
  Andre Pratama, Eiji Ishii, Toshio Kodama, Tetsuya Iida, Shigeaki Matsuda
- Organizer
  第75回日本細菌学会関西支部総会
- Data Source
  KAKENHI-PROJECT-20K15748
[Presentation] ビブリオ属細菌における翻訳アレストを介した遺伝子発現制御2022
- Author(s)
  石井英治，松田重輝，飯田哲也，秋山芳展，森博幸
- Organizer
  第96回日本細菌学会総会
- Invited
- Data Source
  KAKENHI-PROJECT-20K15748

1. MATSUDA Shigeaki

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
2. Pratama Andre

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Ishii Eiji 石井 英治

Research Projects

Research Products

Co-Researchers

細菌における新規lncRNAの生化学的機能解析と生物学的役割の理解Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Mechanisms and physiological significance of mRNA degradation associated with spatial localization of nascent polypeptide chainsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] The read-through transcription-mediated autoactivation circuit for virulence regulator expression drives robust type III secretion system 2 expression in Vibrio parahaemolyticus2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The Xenogeneic Silencer Histone-Like Nucleoid-Structuring Protein Mediates the Temperature and Salinity-Dependent Regulation of the Type III Secretion System 2 in Vibrio parahaemolyticus2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Direct RNA Sequencing Unfolds the Complex Transcriptome of Vibrio parahaemolyticus2021

Author(s)

Journal Title

DOI

Data Source

[Presentation] 腸炎ビブリオの病原性遺伝子島を制御する転写因子VtrBの遠位プロモーターによる正の自己制御機構の解析2023

Author(s)

Organizer

Data Source

[Presentation] 腸炎ビブリオの病原性遺伝子島を制御する転写因子VtrBの遠位プロモーターによる正の自己制御機構の解析2023

Author(s)

Organizer

Data Source

[Presentation] Read-through transcription-mediated positive autoregulation of VtrB drives robust type III secretion system 2 expression in Vibrio parahaemolyticus2023

Author(s)

Organizer

Data Source

[Presentation] Single-Cell Analysis Of iPSC-Derived Organoids as Model to Study Host-Pathogen Interaction2023

Author(s)

Organizer

Data Source

[Presentation] Read-through transcription-mediated positive autoregulation of VtrB drives robust type III secretion system 2 expression in Vibrio parahaemolyticus2023

Author(s)

Organizer

Data Source

[Presentation] The regulatory circuit of type III secretion system 2 genes in Vibrio parahaemolyticus2023

Author(s)

Organizer

Data Source

[Presentation] A positive regulatory loop of a virulence regulator gene linked by read-through transcription ensures pathogenicity in Vibrio parahaemolyticus2023

Author(s)

Organizer

Data Source

[Presentation] The regulatory circuit of type III secretion system 2 genes in Vibrio parahaemolyt2023

Author(s)

Organizer

Data Source

[Presentation] The regulatory circuit of type III secretion system 2 genes ensures virulence in Vibrio parahaemolyticus2023

Author(s)

Organizer

Data Source

[Presentation] Single-Cell Analysis Of iPSC-Derived Organoids as Model to Study Host-Pathogen Interaction2023

Author(s)

Organizer

Data Source

[Presentation] A positive regulatory loop of a virulence regulator gene linked by read-through transcription ensures pathogenicity in Vibrio parahaemolyticus2023

Author(s)

Organizer

Data Source

[Presentation] The regulatory circuit of type III secretion system 2 genes ensures virulence in Vibrio parahaemolyticus2023

Author(s)

Organizer

Data Source

[Presentation] Genome-wide mining of non-coding RNAs in the food-borne pathogen Vibrio parahaemolyticus using direct RNA sequencing2022

Ishii Eiji 石井英治