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Uchikoga Nobuyuki  内古閑 伸之

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内古閑 伸之  ウチコガ ノブユキ

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Researcher Number 20397483
Other IDs
Affiliation (Current) 2025: 明治大学, 総合数理学部, 特任准教授
Affiliation (based on the past Project Information) *help 2018: 明治大学, 総合数理学部, 助教
2017: 東京工業大学, 情報生命博士教育院, 特任助教
2015 – 2017: 中央大学, 理工学部, 助教
Review Section/Research Field
Principal Investigator
Life / Health / Medical informatics
Except Principal Investigator
Life / Health / Medical informatics
Keywords
Principal Investigator
相互作用ネットワーク / プロファイル / タンパク質間相互作用 / 生体生命情報学 / 網羅的ドッキング / 相互作用プロファイル / タンパク質間相互作用ネットワーク予測
Except Principal Investigator
並列計算 / タンパク質間相互作用ネットワーク / タンパク質ドッキング / タンパク質間相互作用
  • Research Projects

    (2 results)
  • Research Products

    (32 results)
  • Co-Researchers

    (7 People)
  •  Tropical diseases-related protein-protein interaction analysis by using exhaustive docking

    • Principal Investigator
      Matsuzaki Yuri
    • Project Period (FY)
      2016 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Tokyo Institute of Technology
  •  アミノ酸残基レベルの相互作用プロファイルを用いたタンパク質間相互作用予測法の開発Principal Investigator

    • Principal Investigator
      内古閑 伸之
    • Project Period (FY)
      2015 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Tokyo Institute of Technology
      Chuo University

All 2019 2018 2017 2016 2015

All Journal Article Presentation

  • [Journal Article] Specificity of broad protein interaction surfaces for proteins with multiple binding partners2016

    • Author(s)
      Nobuyuki Uchikoga, Yuri Matsuzaki, Masahito Ohue, Yutaka Akiyama
    • Journal Title

      Biophysics and Physicobiology

      Volume: 13 Issue: 0 Pages: 105-115

    • DOI

      10.2142/biophysico.13.0_105

    • NAID

      130005165366

    • ISSN
      2189-4779
    • Language
      English
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-24240044, KAKENHI-PROJECT-15H02776, KAKENHI-PROJECT-15K00407, KAKENHI-PROJECT-16K00388, KAKENHI-PROJECT-15K16081
  • [Journal Article] Rigid-Docking Approaches to Explore Protein-Protein Interaction Space2016

    • Author(s)
      Yuri Matsuzaki, Nobuyuki Uchikoga Masahito Ohue, Yutaka Akiyama
    • Journal Title

      Advances in Biochemical Engineering/Biotechnology

      Volume: ー Pages: 1-23

    • DOI

      10.1007/10_2016_41

    • ISBN
      9783319564593, 9783319564609
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24240044, KAKENHI-PROJECT-15K00407, KAKENHI-PROJECT-16K00388, KAKENHI-PROJECT-15K16081, KAKENHI-PROJECT-15H02776, KAKENHI-PROJECT-17H01814
  • [Presentation] Pattern of codon usage for chemotaxis related protein genes in E.coli and T.maritima.2019

    • Author(s)
      Serika Taga, Nobuyuki Uchikoga, Takanori Sasaki
    • Organizer
      The 22nd International Conference on Research in Computational Molecular Biology (RECOMB) 2019
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K00388
  • [Presentation] バクテリアが有する走化性関連遺伝子のコドン使用傾向2018

    • Author(s)
      多賀芹華、内古閑伸之、佐々木貴規
    • Organizer
      第7回日本生物物理学会関東支部会
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] Supercomputing-based exhaustive protein-protein interaction prediction and its open database.2018

    • Author(s)
      Masahito Ohue, Takanori Hayashi, Hiroki Watanabe, Yuri Matsuzaki, Nobuyuki Uchikoga, Yutaka Akiyama
    • Organizer
      第56回生物物理学会年会(岡山大学)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K00388
  • [Presentation] A large decoy dataset for protein-protein docking model quality assessment.2018

    • Author(s)
      Takanori Hayashi, Masahito Ohue, Juliette Martin, Guillaume Launay, Yuri Matsuzaki, Nobuyuki Uchikoga, Yutaka Akiyama
    • Organizer
      第56回生物物理学会年会(岡山大学)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K00388
  • [Presentation] Analysis of amino acid sequences of protein interaction surfaces by rigid-body docking for known and unknown protein complex pairs.2018

    • Author(s)
      Nobuyuki Uchikoga, Yuri Matsuzaki
    • Organizer
      第56回生物物理学会年会(岡山大学)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K00388
  • [Presentation] Analysis of Protein interaction surfaces using a profile method with rigid-body docking decoys.2017

    • Author(s)
      Nobuyuki Uchikoga, Yuri Matsuzaki, Masahito Ohue, Yutaka Akiyama
    • Organizer
      The 25th Conferance of ISMB/ The 16th ECCB
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] A Docking Based Approach to Analyze Interaction Surfaces of Virus-Host Protein-Protein Interactions2017

    • Author(s)
      Matsuzaki, Y., Simm, J., Uchikoga, N., and Akiyama, Y.
    • Organizer
      Biophysical Society 61th annual meeting
    • Place of Presentation
      New Orleans, USA
    • Year and Date
      2017-02-11
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] Interaction surfaces of proteins involved in bacterial chemotaxis with rigid-body docking decoys.2017

    • Author(s)
      Nobuyuki Uchikoga, Yuri Matsuzaki, Masahito Ohue, Yutaka Akiyama
    • Organizer
      Biophysical Society 61st Annual Meeting
    • Place of Presentation
      New Orleans, USA
    • Year and Date
      2017-02-11
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K00388
  • [Presentation] A docking based approach to analyze interaction surfaces of protein-protein Interactions.2017

    • Author(s)
      Yuri Matsuzaki, Jaak Simm, Nobuyuki Uchikoga
    • Organizer
      The 25th Conference on Intelligent Systems for Molecular Biology (ISMB2017)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K00388
  • [Presentation] Protein interaction surfaces of protein-protein interaction networks in bacterial chemotaxis networks using profile methods.2017

    • Author(s)
      Nobuyuki Uchikoga, Yuri Matsuzaki, Masahito Ohue, Yutaka Akiyama
    • Organizer
      The 55th Annual Meeting of the Biophysical Society of Japan (2017)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K00388
  • [Presentation] Interaction Surfaces of Proteins Involved in Bacterial Chemotaxis with Rigid-Body Docking Decoys2017

    • Author(s)
      Uchikoga, N., Matsuzaki, Y., Ohue, M., and Akiyama, Y.
    • Organizer
      Biophysical Society 61th annual meeting
    • Place of Presentation
      New Orleans, USA
    • Year and Date
      2017-02-11
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] Protein interaction surfaces of protein-protein interaction networks in bacterial chemotaxis networks using profile methods2017

    • Author(s)
      Nobuyuki Uchikoga, Yuri Matsuzaki, Masahito Ohue, Yutaka Akiyama
    • Organizer
      The 55th Annual Meeting of the Biophysical Society of Japan
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] A docking based approach to analyze interactin surfaces of virus-host protein-protein interactions.2017

    • Author(s)
      Yuri Matsuzaki, Nobuyuki Uchikoga, Jaak Simm, Yutaka Akiyama
    • Organizer
      Biophysical Society 61st Annual Meeting
    • Place of Presentation
      New Orleans, USA
    • Year and Date
      2017-02-11
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K00388
  • [Presentation] A Docking Based Approach to Analyze Interaction Surfaces of Protein-protein Interactions2017

    • Author(s)
      Yuri Matsuzaki, Jaak Simm, Nobuyuki Uchikoga
    • Organizer
      The 25th Conferance of ISMB/ The 16th ECCB
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] Re-Docking by Analyzing the Profile of Protein-Protein Interaction2017

    • Author(s)
      Amano, Y., Nemoto. W., and Uchikoga, N.
    • Organizer
      Biophysical Society 61th annual meeting
    • Place of Presentation
      New Orleans, USA
    • Year and Date
      2017-02-11
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] Analysis for protein-protein interaction surfaces : exploring docking space and biological protein networks.2017

    • Author(s)
      Nobuyuki Uchikoga
    • Organizer
      4th IIT Madras - Tokyo Tech Joint Symposium on Frontiers in Bioinformatics
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] Analysis of protein interaction surfaces using a profile method with rigid-body docking decoys.2017

    • Author(s)
      Nobuyuki Uchikoga, Yuri Matsuzaki, Masahito Ohue, Yutaka Akiyama
    • Organizer
      The 25th Conference on Intelligent Systems for Molecular Biology (ISMB2017)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K00388
  • [Presentation] Re-docking by analyzing the profile of protein-protein interaction2016

    • Author(s)
      Amano, Y., Nemoto, W., and Uchikoga, N.
    • Organizer
      CBI学会2016年大会
    • Place of Presentation
      東京(タワーポート船堀)
    • Year and Date
      2016-10-25
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] Biophysical views of protein interaction surfaces2016

    • Author(s)
      Uchikoga N
    • Organizer
      Recent advancements in chemoinformatics & structural informatics
    • Place of Presentation
      埼玉(東京電機大学 鳩山キャンパス)
    • Invited
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers2016

    • Author(s)
      Masahito Ohue, Yuri Matsuzaki, Nobuyuki Uchikoga, Takashi Ishida, Yutaka Akiyama
    • Organizer
      Biophysical Society 60th Annual Meeting
    • Place of Presentation
      ロサンゼルスコンベンションセンター,カリフォルニア州,アメリカ
    • Year and Date
      2016-03-01
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] Protein-protein interaction network prediction by using rigid-body docking.2016

    • Author(s)
      Yuri Matsuzaki, Nobuyuki Uchikoga, Jaak Simm
    • Organizer
      17th International Conference on Systems Biology (ICSB2016)
    • Place of Presentation
      Bercelona, Spain
    • Year and Date
      2016-09-16
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K00388
  • [Presentation] Profile analysis of protien interaction surface with rigid-body docking decoys2016

    • Author(s)
      Uchikoga N
    • Organizer
      The 54th annual meeting of the Biophysical Society of Japan
    • Place of Presentation
      茨城(つくば国際会議場)
    • Invited
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] Profile analysis of protein interaction surface with rigid-body docking decoys.2016

    • Author(s)
      Nobuyuki Uchikoga
    • Organizer
      The 54th Annual Meeting of the Biophysical Society of Japan (Symposium 2SEA: Applications of protein structure data for understanding biological phenomenon)
    • Place of Presentation
      茨城県
    • Year and Date
      2016-11-25
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K00388
  • [Presentation] Analysis of Physico-Chemical Properties of Protein Docking Decoys Generated by Rigid-Body Docking2016

    • Author(s)
      Nobuyuki Uchikoga, Yuri Matsuzaki, Masahito Ohue, Yutaka Akiyama
    • Organizer
      Biophysical Society 60th Annual Meeting
    • Place of Presentation
      ロサンゼルスコンベンションセンター,カリフォルニア州,アメリカ
    • Year and Date
      2016-03-01
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] MEGADOCK: A high-performance protein-protein interaction prediction software for petascale super-computing environments.2015

    • Author(s)
      Yuri Matsuzaki, Nobuyuki Uchikoga, Masahito Ohue, Takashi Ishida, Yutaka Akiyama
    • Organizer
      Supercomputational Life Science 2015 (SCLS2015)
    • Place of Presentation
      東京大学,文京区,東京都
    • Year and Date
      2015-10-21
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] タンパク質間相互作用残基の物理化学的性質による単純化プロファイルを用いたポストドッキング解析2015

    • Author(s)
      大上雅史,内古閑伸之,松崎由理,秋山泰
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      あわぎんホール,徳島市,徳島県
    • Year and Date
      2015-06-24
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] アミノ酸プロファイルによるタンパク質ペプチド複合体のポストドッキング解析2015

    • Author(s)
      大上雅史, 内古閑伸之,松崎由理,秋山泰
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学,金沢市,石川県
    • Year and Date
      2015-09-14
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] 剛体アンサンブルドッキングによって得られた候補構造群における相互作用残基ペアの特徴の解析2015

    • Author(s)
      内古閑伸之,松崎由理,大上雅史, 秋山泰
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学,金沢市,石川県
    • Year and Date
      2015-09-14
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] MEGADOCK: A high-performance protein-protein interaction prediction software for petascale supercomputing environments2015

    • Author(s)
      Yuri Matsuzaki, Masahito Ohue, Nobuyuki Uchikoga, Takashi Ishida, Yutaka Akiyama
    • Organizer
      3rd IIT Madras - Tokyo Tech Joint Symposium on Algorithms and Applications of Bioinformatics
    • Place of Presentation
      インド工科大学マドラス校,チェンナイ,インド
    • Year and Date
      2015-11-05
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00407
  • [Presentation] Analysis of protein docking decoys in terms of physicochemical properties of protein surfaces using rigid-body docking process2015

    • Author(s)
      Nobuyuki Uchikoga, Yuri Matsuzaki, Masahito Ohue, Yutaka Akiyama
    • Organizer
      3rd IIT Madras - Tokyo Tech Joint Symposium on Algorithms and Applications of Bioinformatics
    • Place of Presentation
      インド工科大学マドラス校,チェンナイ,インド
    • Year and Date
      2015-11-05
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00407
  • 1.  Matsuzaki Yuri (30572888)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 22 results
  • 2.  大上 雅史 (50743209)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 11 results
  • 3.  黒川 裕美子 (10381633)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 4.  Shimu Yaku
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 3 results
  • 5.  Marutan Jurietto
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 6.  Renei Giyomu
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 7.  AKIYAMA Yutaka
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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