Tan Cheng 譚丞

Researcher Number	20865886
Other IDs	https://orcid.org/0000-0002-8957-4267
Affiliation (Current)	2024: 国立研究開発法人理化学研究所, 計算科学研究センター, 研究員
Affiliation (based on the past Project Information) *help	2023 – 2024: 国立研究開発法人理化学研究所, 計算科学研究センター, 研究員 2021 – 2022: 国立研究開発法人理化学研究所, 計算科学研究センター, 特別研究員
Review Section/Research Field	Except Principal Investigator Transformative Research Areas, Section (III)
Keywords	Except Principal Investigator 長鎖ノンコーディングRNA / Hero蛋白質 / 液液相分離 / 天然変性蛋白質 / 分子動力学シミュレーション

非ドメイン型バイオポリマーの分子動力学計算
- Principal Investigator
  
  依田隆夫
- Project Period (FY)
  2021 – 2025
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  Nagahama Institute of Bio-Science and Technology

All 2024 2023 2022

All Journal Article Presentation Book

[Book] 分子シミュレーションで理解する相分離のメカニズム（「フロントランナー直伝　相分離解析プロトコール（加藤・白木・中川編）」の p.235-2412022
- Author(s)
  Cheng Tan，新津　藍，依田隆夫，杉田有治
- Total Pages
  7
- Publisher
  羊土社
- ISBN
  9784758122597
- Data Source
  KAKENHI-PLANNED-21H05282
[Journal Article] GENESIS CGDYN: large-scale coarse-grained MD simulation with dynamic load balancing for heterogeneous biomolecular systems2024
- Author(s)
  Jung Jaewoon、Tan Cheng、Sugita Yuji
- Journal Title
  
  Nature Communications
  
  Volume: 15 Issue: 1 Pages: 3370-3370
- DOI
  10.1038/s41467-024-47654-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-21H05249, KAKENHI-PLANNED-21H05282, KAKENHI-PROJECT-19H05645
[Journal Article] Highly charged proteins and their repulsive interactions antagonize biomolecular condensation2023
- Author(s)
  Cheng Tan, Ai Niitsu, Yuji Sugita
- Journal Title
  
  JACS Au
  
  Volume: 3 Issue: 3 Pages: 834-848
- DOI
  10.1021/jacsau.2c00646
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-21H05249, KAKENHI-PLANNED-21H05282, KAKENHI-PROJECT-19H05645, KAKENHI-PROJECT-21J40162
[Journal Article] Micelle-like clusters in phase-separated Nanog condensates: A molecular simulation study2023
- Author(s)
  Mizutani Azuki、Tan Cheng、Sugita Yuji、Takada Shoji
- Journal Title
  
  PLOS Computational Biology
  
  Volume: 19 Issue: 7 Pages: e1011321-e1011321
- DOI
  10.1371/journal.pcbi.1011321
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-21H05282
[Journal Article] Implementation of residue-level coarse-grained models I GENESIS for large-scale molecular dynamics simulations2022
- Author(s)
  Cheng Tan, Jaewoon Jung, Chigusa Kobayashi, Diego Ugarte, Shoji Takada, Yuji Sugita
- Journal Title
  
  PLoS Comp. Biol.
  
  Volume: 18 Issue: 4 Pages: e1009578-e1009578
- DOI
  10.1371/journal.pcbi.1009578
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-21H05249, KAKENHI-PLANNED-21H05282, KAKENHI-PROJECT-19H05645
[Presentation] Acceleration of residue-level coarse-grained molecular dynamics by efficient parallelization2023
- Author(s)
  J. Jung, C. Tan, C. Kobayashi, D. Ugarte, Y. Sugita
- Organizer
  The 67th Biophysical Society Annual Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-21H05282
[Presentation] Repulsive interaction and secondary structure of highly charged proteins in regulating biomolecular condensation2023
- Author(s)
  Cheng Tan, Ai Niitsu, Yuji Sugita
- Organizer
  The 67th Biophysical Society Annual Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-21H05282
[Presentation] Regulation of Biomolecular Condensation Studied with Large-Scale Coarse-Grained Molecular Dynamics Simulations in GENESIS2023
- Author(s)
  Cheng Tan
- Organizer
  第61回日本生物物理学会年会
- Invited
- Data Source
  KAKENHI-PLANNED-21H05282
[Presentation] Developments and Applications in Multiscale Molecular Dynamics Simulations for Biomolecular Condensation Using GENESIS2023
- Author(s)
  Cheng Tan
- Organizer
  2023年度第2回計算科学フォーラム
- Invited
- Data Source
  KAKENHI-PLANNED-21H05282
[Presentation] Acceleration of residue-level coarse-grained molecular dynamics by new development of parallelization2022
- Author(s)
  J. Jung, C. Tan, C. Kobayashi, D. Ugarte, Y. Sugita
- Organizer
  第60回日本生物物理学会年会
- Data Source
  KAKENHI-PLANNED-21H05282
[Presentation] Multi-scale molecular dynamics study of repulsive interactions in regulating biomolecular condensation.2022
- Author(s)
  Cheng Tan, Ai Niitsu, Yuji Sugita
- Organizer
  The 32nd Tokyo RNA Club, RIKEN Symposium
- Invited
- Data Source
  KAKENHI-PLANNED-21H05282
[Presentation] Molecular dynamics study of phase behaviors of heat-resistant obscure proteins and their anti-aggregation functions.2022
- Author(s)
  Cheng Tan, Ai Niitsu, Yuji Sugita
- Organizer
  第60回日本生物物理学会年会
- Data Source
  KAKENHI-PLANNED-21H05282

1. 依田隆夫 (50367900)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
2. 鄭載運 (10554701)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
3. 杉田有治

# of Collaborated Projects: 0 results

# of Collaborated Products: 3 results

Tan Cheng 譚 丞

Research Projects

Research Products

Co-Researchers

非ドメイン型バイオポリマーの分子動力学計算

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Book] 分子シミュレーションで理解する相分離のメカニズム（「フロントランナー直伝 相分離解析プロトコール（加藤・白木・中川 編）」の p.235-2412022

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Journal Article] GENESIS CGDYN: large-scale coarse-grained MD simulation with dynamic load balancing for heterogeneous biomolecular systems2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Highly charged proteins and their repulsive interactions antagonize biomolecular condensation2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Micelle-like clusters in phase-separated Nanog condensates: A molecular simulation study2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Implementation of residue-level coarse-grained models I GENESIS for large-scale molecular dynamics simulations2022

Author(s)

Journal Title

DOI

Data Source

[Presentation] Acceleration of residue-level coarse-grained molecular dynamics by efficient parallelization2023

Author(s)

Organizer

Data Source

[Presentation] Repulsive interaction and secondary structure of highly charged proteins in regulating biomolecular condensation2023

Author(s)

Organizer

Data Source

[Presentation] Regulation of Biomolecular Condensation Studied with Large-Scale Coarse-Grained Molecular Dynamics Simulations in GENESIS2023

Author(s)

Organizer

Data Source

[Presentation] Developments and Applications in Multiscale Molecular Dynamics Simulations for Biomolecular Condensation Using GENESIS2023

Author(s)

Organizer

Data Source

[Presentation] Acceleration of residue-level coarse-grained molecular dynamics by new development of parallelization2022

Author(s)

Organizer

Data Source

[Presentation] Multi-scale molecular dynamics study of repulsive interactions in regulating biomolecular condensation.2022

Author(s)

Organizer

Data Source

[Presentation] Molecular dynamics study of phase behaviors of heat-resistant obscure proteins and their anti-aggregation functions.2022

Author(s)

Organizer

Data Source

Tan Cheng 譚丞

[Book] 分子シミュレーションで理解する相分離のメカニズム（「フロントランナー直伝　相分離解析プロトコール（加藤・白木・中川編）」の p.235-2412022