yamada yoichi 山田洋一

… Alternative Names

YAMADA yoichi 山田洋一

YAMADA Yoichi 山田洋一

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Researcher Number	30377402
Other IDs
Affiliation (Current)	2023: 金沢大学, 生命理工学系, 准教授
Affiliation (based on the past Project Information) *help	2012 – 2017: 金沢大学, 電子情報学系, 准教授 2008: Kanazawa University, 電子情報学系, 講師 2007: Kanazawa University, 自然科学研究科, 助教 2004 – 2006: 金沢大学, 自然科学研究科, 助手 2004: 金沢大学, 大学院・自然科学研究科, 助手 2004: KANAZAWA UNIVERSITY, GRADUATE SCHOOL OF NATURAL SCIENCES, RESEARCH ASSOCIATE, 大学院自然科学研究科, 助手
Review Section/Research Field	Principal Investigator Applied genomics / 基礎ゲノム科学 / Genome biology / Genome biology Except Principal Investigator Applied genomics / Biological Sciences
Keywords	Principal Investigator HM-PCR / ヒドロキシメチル化 / DNAメチル化 / メチル化ボディマップ / ゲノム機能 / エピジェネティクス / メチル化 / インプリント遺伝子 Except Principal Investigator 画像処理 / 遺伝子変異魚 … More / ゼブラフィッシュ / 視覚評価 / 視神経再生 / 追尾行動 / 行動異常 / 視覚回復 / 行動解析 / 定量化 / タンパク質間相互作用 / 酵母2ハイブリッド法 / PB1ドメイン / TAPタグ / ユビキチン / 質量分析 / DNAメチル化 / 全長cDNA / 蛋白質間相互作用 / 2ハイブリッド法 / 質量分析法 / ユビキチン化 / 蛋白質DNA相互作用 / 1ハイブリッド法 / 相互作用ドメイン / 蛋白質核酸相互作用 / 転写開始点 / 出芽酵母 / PROTEIN-PROTEIN INTERACTION / YEAST 2-HYBRID SYSTEM / PB1 DOMAIN / TAP TAG / UBIQUITIN / MASS SPECTROMETRY / DNA METHYLATION / FULL LENGTH cDNA Less

Is sequence-dependent allele-specific hydroxymethylation ubiquitous in the mammalian genome?Principal Investigator
- Principal Investigator
  
  yamada yoichi
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Genome biology
- Research Institution
  Kanazawa University
Search for sequence-dependent allele-specific hydroxymethylationPrincipal Investigator
- Principal Investigator
  
  YAMADA yoichi
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Genome biology
- Research Institution
  Kanazawa University
A comprehensive identification of human imprinted genes, limited to transcription factor genesPrincipal Investigator
- Principal Investigator
  
  YAMADA Yoichi
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  Kanazawa University
突然変異魚の表現型解析に向けた視覚性諸刺激応答行動の定量化
- Principal Investigator
  
  村本健一郎
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Exploratory Research
- Research Field
  
  Applied genomics
- Research Institution
  Kanazawa University
網羅的アレル別メチル化解析によるヒトメチル化ボディマップの作成Principal Investigator
- Principal Investigator
  
  山田洋一
- Project Period (FY)
  2005 – 2006
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Applied genomics
- Research Institution
  Kanazawa University
突然変異魚の視覚性刺激応答行動の定量化によるスクリーニングと責任遺伝子の同定
- Principal Investigator
  
  村本健一郎
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Exploratory Research
- Research Field
  
  Applied genomics
- Research Institution
  Kanazawa University
SYSTEMATIC COLLECTION OF BASIS INFORMATION FOR PROTEIN INTERACTION PREDICTION
- Principal Investigator
  
  ITO Takashi
- Project Period (FY)
  2003 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  THE UNIVERSITY OF TOKYO

All 2015 2013 2012 2009 2008 2006 2004

All Journal Article

[Journal Article] Factors to preserve CpG-rich sequences in methylated CpG islands2015
- Author(s)
  Hiroki Miyahara, Osamu Hirose, Kenji Satou, Yoichi Yamada
- Journal Title
  
  BMC Genomics
  
  Volume: Vol.16 Pages: 144-144
- DOI
  10.1186/s12864-015-1286-x
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-24510266
[Journal Article] Regional DNA methylation differences between humans and chimpanzees are associated with genetic changes, transcriptional divergence and disease genes2013
- Author(s)
  福田渓
- Journal Title
  
  J Hum Genet
  
  Volume: 58 Pages: 446-454
- DOI
  10.1038/jhg.2013.55
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-13J03253, KAKENHI-PROJECT-22247037, KAKENHI-PROJECT-23249019, KAKENHI-PROJECT-23659181, KAKENHI-PUBLICLY-24113511, KAKENHI-PROJECT-24510266, KAKENHI-PROJECT-24650234, KAKENHI-PROJECT-25711027
[Journal Article] Validation of MIMGO: a method to identify differentially expressed GO terms in a microarray dataset2012
- Author(s)
  Yoichi Yamada, Hiroki Sawada, Ken-ichi Hirotani, Masanobu Oshima, Kenji Satou
- Journal Title
  
  BMC Research Notes
  
  Volume: Vol.5:680
- DOI
  10.1186/1756-0500-5-680
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24510266
[Journal Article] An identification method of data-specific GO terms from a microarray data set2009
- Author(s)
  Yoichi Yamada
- Journal Title
  
  IEICE TRANSACTIONS on Information and Systems (印刷中)
- NAID
  10026809481
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19710162
[Journal Article] An identification method of data-specific GO terms from a microarray data set2009
- Author(s)
  Yoichi Yamada, Ken-ichi Hirotani, Kenji Satou, Ken-ichiro Muramoto
- Journal Title
  
  IEICE TRANSACTIONS on Information and Systems Vol.E92-D No.5
  
  Pages: 1093-1102
- NAID
  10026809481
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19710162
[Journal Article] Prediction of Genomic Methylation Status on CpG Islands Using DNA Sequence Features2008
- Author(s)
  Yoichi Yamada, Kenji Satou
- Journal Title
  
  WSEAS Transactions on Biology and Biomedicine Vol.5
  
  Pages: 153-162
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19710162
[Journal Article] Prediction of Genomic Methylation Status on CpG Islands Using DNA Sequence Features2008
- Author(s)
  Yoichi Yamada
- Journal Title
  
  WSEAS Transactions on Biology and Biomedicine 5
  
  Pages: 153-162
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19710162
[Journal Article] A comprehensive allelic methylation analysis of CpG islands on human chromosome 11q2006
- Author(s)
  Yoichi Yamada
- Journal Title
  
  DNA SEQUENCE 17・4
  
  Pages: 300-306
- Data Source
  KAKENHI-PROJECT-17710169
[Journal Article] A yeast one-hybrid system to detect methylation-dependent DNA-protein interactions2004
- Author(s)
  Feng, S.-Y., Ota, K., Yamada, Y., Sawabu, N., Ito, T.
- Journal Title
  
  Biochem. Biophys. Res. Commun. 313
  
  Pages: 922-925
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15014213
[Journal Article] A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q.2004
- Author(s)
  Yamada, Y. et al.
- Journal Title
  
  Genome Res. 14
  
  Pages: 247-266
- Data Source
  KAKENHI-PROJECT-15014213
[Journal Article] An evolutionary scenario for genomic imprinting of Impact lying between nonimprinted neighbors2004
- Author(s)
  Okamura, K., Yamada, Y., Sakaki, Y., Ito, T.
- Journal Title
  
  DNA Res. 11
  
  Pages: 381-390
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15014213
[Journal Article] A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q2004
- Author(s)
  Yamada, Y., Watanabe, H., Miura, F., Soejima, H., Uchiyama, M., Iwasaka, T., Mukai, T., Sakaki, Y., Ito, T.
- Journal Title
  
  Genome Res. 14
  
  Pages: 247-266
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15014213
[Journal Article] A yeast one-hybrid system to detect methylation-dependent DNA-protein interactions2004
- Author(s)
  Feng, S.-Y., Ota, K., Yamada, Y., Sawabu, N., Ito, T.
- Journal Title
  
  Biochem.Biophys.Res.Commun 313
  
  Pages: 922-925
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15014213
[Journal Article] An evolutionary scenario for genomic imprinting of Impact lying between nonimprinted neighbors.2004
- Author(s)
  Okamura, K., Yamada, Y., Sakaki, Y., Ito, T.
- Journal Title
  
  DNA Res. 11
  
  Pages: 381-390
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15014213
[Journal Article] A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q2004
- Author(s)
  Yamada, Y. et al.
- Journal Title
  
  Genome Res. 14
  
  Pages: 247-266
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15014213

1. 村本健一郎 (70042835)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
2. 加藤聖 (10019614)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
3. 久保守 (90249772)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. ITO Takashi (90201326)

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
5. SUMMOTO Hidekl (30179303)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. OTA Kazuhisa (00322727)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
7. 秋田純一 (10303265)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. GO Yasuhiro

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
9. ICHIYANAGI Kenji

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
10. 福田渓

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
11. 佐々木裕之

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
12. 副島英伸

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

yamada yoichi 山田 洋一

YAMADA yoichi 山田 洋一

YAMADA Yoichi 山田 洋一

Research Projects

Research Products

Co-Researchers

Is sequence-dependent allele-specific hydroxymethylation ubiquitous in the mammalian genome?Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Search for sequence-dependent allele-specific hydroxymethylationPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

A comprehensive identification of human imprinted genes, limited to transcription factor genesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

突然変異魚の表現型解析に向けた視覚性諸刺激応答行動の定量化

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

網羅的アレル別メチル化解析によるヒトメチル化ボディマップの作成Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

突然変異魚の視覚性刺激応答行動の定量化によるスクリーニングと責任遺伝子の同定

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

SYSTEMATIC COLLECTION OF BASIS INFORMATION FOR PROTEIN INTERACTION PREDICTION

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Factors to preserve CpG-rich sequences in methylated CpG islands2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Regional DNA methylation differences between humans and chimpanzees are associated with genetic changes, transcriptional divergence and disease genes2013

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Validation of MIMGO: a method to identify differentially expressed GO terms in a microarray dataset2012

Author(s)

Journal Title

DOI

Data Source

[Journal Article] An identification method of data-specific GO terms from a microarray data set2009

Author(s)

Journal Title

NAID

Data Source

[Journal Article] An identification method of data-specific GO terms from a microarray data set2009

Author(s)

Journal Title

NAID

Data Source

[Journal Article] Prediction of Genomic Methylation Status on CpG Islands Using DNA Sequence Features2008

Author(s)

Journal Title

Data Source

[Journal Article] Prediction of Genomic Methylation Status on CpG Islands Using DNA Sequence Features2008

Author(s)

Journal Title

yamada yoichi 山田洋一

YAMADA yoichi 山田洋一

YAMADA Yoichi 山田洋一