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yamada yoichi  山田 洋一

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YAMADA yoichi  山田 洋一

YAMADA Yoichi  山田 洋一

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Researcher Number 30377402
Other IDs
Affiliation (Current) 2022: 金沢大学, 生命理工学系, 准教授
Affiliation (based on the past Project Information) *help 2012 – 2017: 金沢大学, 電子情報学系, 准教授
2008: Kanazawa University, 電子情報学系, 講師
2007: Kanazawa University, 自然科学研究科, 助教
2004 – 2006: 金沢大学, 自然科学研究科, 助手
2004: 金沢大学, 大学院・自然科学研究科, 助手
2004: KANAZAWA UNIVERSITY, GRADUATE SCHOOL OF NATURAL SCIENCES, RESEARCH ASSOCIATE, 大学院自然科学研究科, 助手
Review Section/Research Field
Principal Investigator
Applied genomics / 基礎ゲノム科学 / Genome biology / Genome biology
Except Principal Investigator
Applied genomics / Biological Sciences
Keywords
Principal Investigator
HM-PCR / ヒドロキシメチル化 / DNAメチル化 / メチル化ボディマップ / ゲノム機能 / エピジェネティクス / メチル化 / インプリント遺伝子
Except Principal Investigator
画像処理 / 遺伝子変異魚 … More / ゼブラフィッシュ / 視覚評価 / 視神経再生 / 追尾行動 / 行動異常 / 視覚回復 / 行動解析 / 定量化 / タンパク質間相互作用 / 酵母2ハイブリッド法 / PB1ドメイン / TAPタグ / ユビキチン / 質量分析 / DNAメチル化 / 全長cDNA / 蛋白質間相互作用 / 2ハイブリッド法 / 質量分析法 / ユビキチン化 / 蛋白質DNA相互作用 / 1ハイブリッド法 / 相互作用ドメイン / 蛋白質核酸相互作用 / 転写開始点 / 出芽酵母 / PROTEIN-PROTEIN INTERACTION / YEAST 2-HYBRID SYSTEM / PB1 DOMAIN / TAP TAG / UBIQUITIN / MASS SPECTROMETRY / DNA METHYLATION / FULL LENGTH cDNA Less
  • Research Projects

    (7 results)
  • Research Products

    (15 results)
  • Co-Researchers

    (12 People)
  •  Is sequence-dependent allele-specific hydroxymethylation ubiquitous in the mammalian genome?Principal Investigator

    • Principal Investigator
      yamada yoichi
    • Project Period (FY)
      2015 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Genome biology
    • Research Institution
      Kanazawa University
  •  Search for sequence-dependent allele-specific hydroxymethylationPrincipal Investigator

    • Principal Investigator
      YAMADA yoichi
    • Project Period (FY)
      2012 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Genome biology
    • Research Institution
      Kanazawa University
  •  A comprehensive identification of human imprinted genes, limited to transcription factor genesPrincipal Investigator

    • Principal Investigator
      YAMADA Yoichi
    • Project Period (FY)
      2007 – 2008
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      基礎ゲノム科学
    • Research Institution
      Kanazawa University
  •  突然変異魚の表現型解析に向けた視覚性諸刺激応答行動の定量化

    • Principal Investigator
      村本 健一郎
    • Project Period (FY)
      2006 – 2007
    • Research Category
      Grant-in-Aid for Exploratory Research
    • Research Field
      Applied genomics
    • Research Institution
      Kanazawa University
  •  網羅的アレル別メチル化解析によるヒトメチル化ボディマップの作成Principal Investigator

    • Principal Investigator
      山田 洋一
    • Project Period (FY)
      2005 – 2006
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Applied genomics
    • Research Institution
      Kanazawa University
  •  突然変異魚の視覚性刺激応答行動の定量化によるスクリーニングと責任遺伝子の同定

    • Principal Investigator
      村本 健一郎
    • Project Period (FY)
      2004 – 2005
    • Research Category
      Grant-in-Aid for Exploratory Research
    • Research Field
      Applied genomics
    • Research Institution
      Kanazawa University
  •  SYSTEMATIC COLLECTION OF BASIS INFORMATION FOR PROTEIN INTERACTION PREDICTION

    • Principal Investigator
      ITO Takashi
    • Project Period (FY)
      2003 – 2004
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      THE UNIVERSITY OF TOKYO

All 2015 2013 2012 2009 2008 2006 2004

All Journal Article

  • [Journal Article] Factors to preserve CpG-rich sequences in methylated CpG islands2015

    • Author(s)
      Hiroki Miyahara, Osamu Hirose, Kenji Satou, Yoichi Yamada
    • Journal Title

      BMC Genomics

      Volume: Vol.16 Pages: 144-144

    • DOI

      10.1186/s12864-015-1286-x

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-24510266
  • [Journal Article] Regional DNA methylation differences between humans and chimpanzees are associated with genetic changes, transcriptional divergence and disease genes2013

    • Author(s)
      福田 渓
    • Journal Title

      Journal of Human Genetics

      Volume: 58 Pages: 446-454

    • DOI

      10.1038/jhg.2013.55

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-13J03253, KAKENHI-PROJECT-22247037, KAKENHI-PROJECT-23249019, KAKENHI-PROJECT-23659181, KAKENHI-PUBLICLY-24113511, KAKENHI-PROJECT-24510266, KAKENHI-PROJECT-24650234, KAKENHI-PROJECT-25711027
  • [Journal Article] Validation of MIMGO: a method to identify differentially expressed GO terms in a microarray dataset2012

    • Author(s)
      Yoichi Yamada, Hiroki Sawada, Ken-ichi Hirotani, Masanobu Oshima, Kenji Satou
    • Journal Title

      BMC Research Notes

      Volume: Vol.5:680

    • DOI

      10.1186/1756-0500-5-680

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24510266
  • [Journal Article] An identification method of data-specific GO terms from a microarray data set2009

    • Author(s)
      Yoichi Yamada
    • Journal Title

      IEICE TRANSACTIONS on Information and Systems (印刷中)

    • NAID

      10026809481

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19710162
  • [Journal Article] An identification method of data-specific GO terms from a microarray data set2009

    • Author(s)
      Yoichi Yamada, Ken-ichi Hirotani, Kenji Satou, Ken-ichiro Muramoto
    • Journal Title

      IEICE TRANSACTIONS on Information and Systems Vol.E92-D No.5

      Pages: 1093-1102

    • NAID

      10026809481

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19710162
  • [Journal Article] Prediction of Genomic Methylation Status on CpG Islands Using DNA Sequence Features2008

    • Author(s)
      Yoichi Yamada, Kenji Satou
    • Journal Title

      WSEAS Transactions on Biology and Biomedicine Vol.5

      Pages: 153-162

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19710162
  • [Journal Article] Prediction of Genomic Methylation Status on CpG Islands Using DNA Sequence Features2008

    • Author(s)
      Yoichi Yamada
    • Journal Title

      WSEAS Transactions on Biology and Biomedicine 5

      Pages: 153-162

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19710162
  • [Journal Article] A comprehensive allelic methylation analysis of CpG islands on human chromosome 11q2006

    • Author(s)
      Yoichi Yamada
    • Journal Title

      DNA SEQUENCE 17・4

      Pages: 300-306

    • Data Source
      KAKENHI-PROJECT-17710169
  • [Journal Article] A yeast one-hybrid system to detect methylation-dependent DNA-protein interactions2004

    • Author(s)
      Feng, S.-Y., Ota, K., Yamada, Y., Sawabu, N., Ito, T.
    • Journal Title

      Biochem. Biophys. Res. Commun. 313

      Pages: 922-925

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014213
  • [Journal Article] A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q.2004

    • Author(s)
      Yamada, Y. et al.
    • Journal Title

      Genome Res. 14

      Pages: 247-266

    • Data Source
      KAKENHI-PROJECT-15014213
  • [Journal Article] An evolutionary scenario for genomic imprinting of Impact lying between nonimprinted neighbors2004

    • Author(s)
      Okamura, K., Yamada, Y., Sakaki, Y., Ito, T.
    • Journal Title

      DNA Res. 11

      Pages: 381-390

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014213
  • [Journal Article] A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q2004

    • Author(s)
      Yamada, Y., Watanabe, H., Miura, F., Soejima, H., Uchiyama, M., Iwasaka, T., Mukai, T., Sakaki, Y., Ito, T.
    • Journal Title

      Genome Res. 14

      Pages: 247-266

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014213
  • [Journal Article] A yeast one-hybrid system to detect methylation-dependent DNA-protein interactions2004

    • Author(s)
      Feng, S.-Y., Ota, K., Yamada, Y., Sawabu, N., Ito, T.
    • Journal Title

      Biochem.Biophys.Res.Commun 313

      Pages: 922-925

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014213
  • [Journal Article] An evolutionary scenario for genomic imprinting of Impact lying between nonimprinted neighbors.2004

    • Author(s)
      Okamura, K., Yamada, Y., Sakaki, Y., Ito, T.
    • Journal Title

      DNA Res. 11

      Pages: 381-390

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014213
  • [Journal Article] A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q2004

    • Author(s)
      Yamada, Y. et al.
    • Journal Title

      Genome Res. 14

      Pages: 247-266

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014213
  • 1.  村本 健一郎 (70042835)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 0 results
  • 2.  加藤 聖 (10019614)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 0 results
  • 3.  久保 守 (90249772)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 0 results
  • 4.  ITO Takashi (90201326)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 5 results
  • 5.  SUMMOTO Hidekl (30179303)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 6.  OTA Kazuhisa (00322727)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 7.  秋田 純一 (10303265)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 8.  GO Yasuhiro
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 9.  ICHIYANAGI Kenji
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 10.  福田 渓
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 11.  佐々木 裕之
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 12.  副島 英伸
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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