AMIN MD. ALTAFUL ＡＭＩＮＭＤ．ＡＬＴＡＦＵＬ

Researcher Number	30379531
Other IDs
Affiliation (Current)	2022: 奈良先端科学技術大学院大学, 先端科学技術研究科, 准教授
Affiliation (based on the past Project Information) *help	2018 – 2021: 奈良先端科学技術大学院大学, 先端科学技術研究科, 准教授 2017: 奈良先端科学技術大学院大学, 情報科学研究科, 准教授
Review Section/Research Field	Principal Investigator Life / Health / Medical informatics / Basic Section 62010:Life, health and medical informatics-related
Keywords	Principal Investigator Metabolomics / Metabolic Network / Network Clustering / Metabolite Activity / Big Data Biology / Algorithm / Systems Biology / Algorithms / Big data biology / Network clustering … More / Secondary metabolites / Antimicrobial / Natural products / Traditional Medicines / Lasso regression / Deep learning / Machine Learning / Graph Clustering / Random Forest / Chemoinformatics / Antimicrobials / Natural Products Less

On searching antimicrobial agents among natural products:Fighting against SuperbugPrincipal Investigator
- Principal Investigator
  
  AMIN MD.ALTAFUL
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Nara Institute of Science and Technology
A big data approach to function prediction of metabolites by clustering of structural similarity networksPrincipal Investigator
- Principal Investigator
  
  AMIN MD. ALTAFUL
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Nara Institute of Science and Technology

All 2022 2021 2020 2019 2018 2017

All Journal Article Presentation Book

[Book] Recent Trends in Computational Research on Diseases2022
- Author(s)
  Md. Altaf-Ul-Amin, Shigehiko Kanaya, Naoaki Ono and Ming Huang (Eds.)
- Total Pages
  130
- Publisher
  MPDI
- ISBN
  9783036532301
- Data Source
  KAKENHI-PROJECT-20K12043
[Book] Applications of Network Clustering in Natural Product Research, In book: Reference Module in Chemistry, Molecular Sciences and Chemical Engineering2020
- Author(s)
  Altaf-Ul-Amin, M., & Kanaya, S.
- Total Pages
  33
- Publisher
  Elsevier
- ISBN
- Data Source
  KAKENHI-PROJECT-17K00406
[Book] Databases for Natural Product Research, In book: Reference Module in Chemistry, Molecular Sciences and Chemical Engineering2020
- Author(s)
  Kanaya, S., Altaf-Ul-Amin, M., Aki, M. H., Huang, M., & Ono, N.
- Total Pages
  16
- Publisher
  Elsevier
- ISBN
- Data Source
  KAKENHI-PROJECT-17K00406
[Book] Comprehensive Natural Products III: Chemistry and Biology.2020
- Author(s)
  Altaf-Ul-Amin, M., & Kanaya, S.
- Total Pages
  32
- Publisher
  Elsevier
- ISBN
  9780081026915
- Data Source
  KAKENHI-PROJECT-20K12043
[Book] Investigating Metabolic Pathways and Networks, In the book: Reference Module in Life Sciences2018
- Author(s)
  Altaf-Ul-Amin, M., Mohamed-Hussein, Z.-A., & Kanaya, S
- Total Pages
  16
- Publisher
  Elsevier
- Data Source
  KAKENHI-PROJECT-17K00406
[Book] Volatile Organic Compound Analysis in Biomedical Diagnosis Applications(Chapter 9)2018
- Author(s)
  Azian Azamimi Abdullah, Md. Altaf-Ul-Amin, and Shigehiko Kanaya
- Total Pages
  20
- Publisher
  Apple Academic Press
- ISBN
  9781771887441
- Data Source
  KAKENHI-PROJECT-17K00406
[Journal Article] Antibacterial Activity Prediction of Plant Secondary Metabolites Based on a Combined Approach of Graph Clustering and Deep Neural Network2022
- Author(s)
  Bozlul Karim, M., Kanaya, S., & Altaf-Ul-Amin, M
- Journal Title
  
  Molecular Informatics
  
  Volume: 41 Pages: 2100247-2100247
- DOI
  10.1002/minf.202100247
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K12043
[Journal Article] Development of a biomarker database toward performing disease classification and finding disease interrelations2021
- Author(s)
  Hossain, Shaikh Farhad, Ming Huang, Naoaki Ono, Aki Morita, Shigehiko Kanaya, and Md Altaf-Ul-Amin
- Journal Title
  
  Database
  
  Volume: 2021 Pages: 1-14
- DOI
  10.1093/database/baab011
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K12043, KAKENHI-PROJECT-20K19923
[Journal Article] Identification of Targeted Proteins by Jamu Formulas for Different Efficacies Using Machine Learning Approach2021
- Author(s)
  Wijaya, S. H., Afendi, F. M., Batubara, I., Huang, M., Ono, N., Kanaya, S., & Altaf-Ul-Amin, M
- Journal Title
  
  life
  
  Volume: 11(8) Pages: 866-866
- DOI
  10.3390/life11080866
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K12043
[Journal Article] DPClusSBO: An integrated software for clustering of simple and bipartite graphs2021
- Author(s)
  MB Karim, S Kanaya, M Altaf-Ul-Amin
- Journal Title
  
  SoftwareX
  
  Volume: 16 Pages: 100821-100821
- DOI
  10.1016/j.softx.2021.100821
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K12043
[Journal Article] Graph cluster approach in identifying novel proteins and significant pathways involved in polycystic ovary syndrome2020
- Author(s)
  Afiqah-Aleng, N., Altaf-Ul-Amin, M., Kanaya, S., & Mohamed-Hussein, Z. A.
- Journal Title
  
  Reproductive biomedicine online
  
  Volume: 40(2) Pages: 319-330
- DOI
  10.1016/j.rbmo.2019.11.012
- Data Source
  KAKENHI-PROJECT-17K00406
[Journal Article] Discovery of inflammatory bowel disease-associated miRNAs using a novel bipartite clustering approach2020
- Author(s)
  Altaf-Ul-Amin, M., Karim, M. B., Hu, P., Naoaki, O. N. O., & Kanaya, S.
- Journal Title
  
  BMC Medical Genomics
  
  Volume: 13(3) Pages: 1-10
- DOI
  10.1186/s12920-020-0660-y
- Data Source
  KAKENHI-PROJECT-17K00406
[Journal Article] BiClusO: A novel biclustering approach and its application to species-VOC relationship data2019
- Author(s)
  Mohammad Bozlul Karim, Ming Huang, Naoaki ONO, Shigehiko Kanaya, Md. Altaf-Ul Amin
- Journal Title
  
  IEEE/ACM transactions on computational biology and bioinformatics
  
  Volume: 2019 Pages: 1-12
- DOI
  10.1109/tcbb.2019.2914901
- Data Source
  KAKENHI-PROJECT-17K00406
[Journal Article] On the determination of important plants for ayurvedic formulas in Bangladesh using unsupervised machine learning approach2019
- Author(s)
  Hossain M. Mofazzal, M. S. A. Gazi, M. Mahbub, A. A. P. Sayed, S. Kanaya and M. Altaf-Ul-Amin
- Journal Title
  
  Academia Journal of Medicinal Plants
  
  Volume: 7(2) Pages: 036-041
- Data Source
  KAKENHI-PROJECT-17K00406
[Journal Article] Implementation of BiClusO and its comparison with other biclustering algorithms2019
- Author(s)
  Mohammad Bozlul Karim, Shigehiko Kanaya, Md. Altaf-Ul-Amin
- Journal Title
  
  Applied Network Science
  
  Volume: 4(1) Pages: 1-15
- Data Source
  KAKENHI-PROJECT-17K00406
[Journal Article] [Special Issue for Honor Award dedicating to Prof Kimito Funatsu]Prediction of Metabolite Activities by Repetitive Clustering of the Structural Similarity Based Networks2019
- Author(s)
  Wakamatsu, N., Huang, M., Ono, N., Altaf-Ul-Amin, M., & Kanaya, S.
- Journal Title
  
  Journal of Computer Aided Chemistry
  
  Volume: 20 Issue: 0 Pages: 76-83
- DOI
  10.2751/jcac.20.76
- NAID
  130007775607
- ISSN
  1345-8647
- Language
  English
- Data Source
  KAKENHI-PROJECT-17K00406
[Journal Article] Data Intensive Study of Accessibility of Edible Species and Healthcare Across the Globe2018
- Author(s)
  Watanabe, Satoshi, K. Y. O. Hoko, K. A. N. G. Liu, Ryohei Eguchi, Md Altaf-Ul-Amin, Aki MORITA, Minako OHASHI et al.
- Journal Title
  
  JJCAM
  
  Volume: 15(1) Issue: 1 Pages: 37-60
- DOI
  10.1625/jcam.15.37
- NAID
  130006708552
- ISSN
  1348-7922, 1348-7930
- Language
  English
- Data Source
  KAKENHI-PROJECT-17K00406
[Journal Article] Metabolite-Content-Guided Prediction of Medicinal/Edible Prop-erties in Plants for Bioprospecting2018
- Author(s)
  Liu, K., Morita, A. H., Kanaya, S., & Atlaf-Ul-Amin, M.
- Journal Title
  
  Curr Res Complement Altern Med
  
  Volume: 130 Pages: 1-15
- Data Source
  KAKENHI-PROJECT-17K00406
[Journal Article] Metabolite-Content-Guided Prediction of Medicinal/Edible Prop-erties in Plants for Bioprospecting2018
- Author(s)
  Liu, K., Morita, A. H., Kanaya, S., & Atlaf-Ul-Amin, M
- Journal Title
  
  Current Research in Complementary & Alternative Medicine
  
  Volume: CRCAM-130 Pages: 2577-2201
- DOI
  10.29011/2577-2201/100030
- Data Source
  KAKENHI-PROJECT-17K00406
[Journal Article] An integrative network-based approach to identify novel disease genes and pathways:a case study in the context of inflammatory bowel disease2018
- Author(s)
  Eguchi, R., Karim, M. B., Hu, P., Sato, T., Ono, N., Kanaya, S., & Altaf-Ul-Amin, M.
- Journal Title
  
  BMCBioinformatics
  
  Volume: 19(1) Pages: 264-264
- DOI
  10.1186/s12859-018-2251-x
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K00406, KAKENHI-PROJECT-16K07223
[Journal Article] Classification of lung adenocarcinoma transcriptome subtypes from pathological images using deep convolutional networks.2018
- Author(s)
  3.Antonio, V. A. A., Ono, N., Saito, A., Sato, T., Altaf-Ul-Amin, M., & Kanaya, S.
- Journal Title
  
  International Journal of Computer Assisted Radiology and Surgery
  
  Volume: 13(12) Pages: 1905-1913
- DOI
  10.1007/s11548-018-1835-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K00406, KAKENHI-PROJECT-18K08170, KAKENHI-PUBLICLY-17H05297
[Journal Article] [Dedicated to Prof. T. Okada and Prof. T. Nishioka: data science in chemistry]Classification of Alkaloid Compounds Based on Subring Skeleton (SRS) Profiling: On Finding Relationship of Compounds with Metabolic Pathways2017
- Author(s)
  Eguchi, R., Ono, N., Horai, H., Amin, M. A. U., Hirai, A. M., Kawahara, J., ... & Kanaya, S.
- Journal Title
  
  Journal of Computer Aided Chemistry
  
  Volume: 18 Issue: 0 Pages: 58-75
- DOI
  10.2751/jcac.18.58
- NAID
  130005877929
- ISSN
  1345-8647
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K00406, KAKENHI-PROJECT-15K00608
[Journal Article] [Dedicated to Prof. T. Okada and Prof. T. Nishioka: data science in chemistry]DPClusOST: A Software Tool for General Purpose Graph Clustering2017
- Author(s)
  Mohammad Bozlul Karim, Nobutaka Wakamatsu and Md. Altaf-Ul-Amin
- Journal Title
  
  Journal of Computer Aided Chemistry
  
  Volume: 18 Issue: 0 Pages: 76-93
- DOI
  10.2751/jcac.18.76
- NAID
  130005877930
- ISSN
  1345-8647
- Language
  English
- Data Source
  KAKENHI-PROJECT-17K00406
[Journal Article] Metabolomic Studies of Indonesian Jamu Medicines: Prediction of Jamu Efficacy and Identification of Important Metabolites2017
- Author(s)
  Sony Hartono Wijaya, Irmanida Batubara, Takaaki Nishioka, Md. Altaf-Ul-Amin, and Shigehiko Kanaya
- Journal Title
  
  Molecular Informatics
  
  Volume: 36 Pages: 1-16
- DOI
  10.1002/minf.201700050
- Data Source
  KAKENHI-PROJECT-17K00406
[Presentation] Cancer Subtyping via Embedded Unsupervised Learning on Transcriptomics Data2022
- Author(s)
  Ziwei Yang, Lingwei Zhu, Zheng Chen, Ming Huang, Naoaki Ono, MD Altaf-Ul-Amin, Shigehiko Kanaya
- Organizer
  The 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Societye (EMBC)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K12043
[Presentation] Applications of KNApSAcK Database and DPClus Algorithm: Plants to Metabolites to Target Proteins in the Context of Jamu Medicines and IBD Gene Prediction2021
- Author(s)
  Md. Altaf-Ul-Amin
- Organizer
  Cyberphysical Digital Microfluidic Biochips in Healthcare Technologies and Applications
- Invited
- Data Source
  KAKENHI-PROJECT-20K12043
[Presentation] An Integrated Multi-Omics Approach for AMR Phenotype Prediction of Gut Microbiota2021
- Author(s)
  Gao, P., Chen, Z., Wang, D., Huang, M., Ono, N., Altaf-Ul-Amin, M., & Kanaya, S
- Organizer
  IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K12043
[Presentation] An approach to construct and validate TCM dataset effective against bacterial pneumonia2021
- Author(s)
  3.G. Pei, C. Zheng, H. Ming, O. Naoaki, K. Shigehiko, and M. Altaf-Ul-Amin
- Organizer
  2021 IEEE 3nd Global Conference on Life Sciences and Technologies (LifeTech)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K12043
[Presentation] Prediction of TCM Effective against Bacterial Pneumonia and Identification of Antibacterial Natural Product2021
- Author(s)
  Gao, P., Chen, Z., Huang, M., Ono, N., Amin, A., & Kanaya, S
- Organizer
  The 43rd Annual International Conference of the IEEE Engineering in Medicine and Biology Societye (EMBC)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K12043
[Presentation] PREDICTION OF POTENTIAL NATURAL ANTIBIOTICS PLANTS BASED ON JAMU FORMULAS USING MACHINE LEARNING APPROACH2021
- Author(s)
  AHMAD KAMAL NASUTION, MD-ALTAF UL-AMIN, SHIGEHIKO KANAYA
- Organizer
  International Conference on Bioinformatics, Biomedicine, Biotechnology and Computational Biology (EUIC3BCB)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K12043
[Presentation] Applications of KNApSAcK Database and DPClus Algorithm: Plants to Metabolites to Target Proteins in the Context of Jamu Medicines and IBD Gene Prediction2020
- Author(s)
  Md. Altaf-Ul-Amin
- Organizer
  Asian Regional Conference on Systems Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K00406
[Presentation] Novel Method and Tool for Clustering of Simple and Bipartite Graphs: Applications in Ecology and Identification of Inflammatory Bowel Disease(IBD) Related Genes and miRNAs2020
- Author(s)
  Md. Altaf-Ul-Amin
- Organizer
  University of south Australia, Adelaide
- Invited
- Data Source
  KAKENHI-PROJECT-17K00406
[Presentation] Development of an Integrated System for Clustering of Simple and Bipartite Graphs and its Application to Different Types of Biological Data2019
- Author(s)
  Md. Altaf-Ul-Amin
- Organizer
  University of Manitoba, Canada
- Invited
- Data Source
  KAKENHI-PROJECT-17K00406
[Presentation] Discovery of inflammatory bowel disease-associated miRNAs using a novel bipartite clustering approach2019
- Author(s)
  Md. Altaf-Ul-Amin
- Organizer
  International Conference on Genome Informatics (GIW 2019)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K00406
[Presentation] Applications of KNApSAcK Database and DPClus Algorithm: Plants to Metabolites to Target Proteins in the Context of Jamu Medicines and IBD Gene Prediction2019
- Author(s)
  Md. Altaf-Ul-Amin
- Organizer
  ICBET 2019, Meiji University, Tokyo
- Invited
- Data Source
  KAKENHI-PROJECT-17K00406
[Presentation] Introduction to Big Data Science Focusing Health Care and Ecology: A Case Study based on Indonesian Traditional Medicines2019
- Author(s)
  Md. Altaf-Ul-Amin
- Organizer
  Big data: Linking Ecosystem, health and wellbeing, BUET, Dhaka, Bangladesh
- Invited
- Data Source
  KAKENHI-PROJECT-17K00406
[Presentation] Inter Disease Relations Based on Human Biomarkers by Network Analysis2019
- Author(s)
  Md. Altaf-Ul-Amin
- Organizer
  IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K00406
[Presentation] Data-Intensive Science of Jamu Medicines2018
- Author(s)
  Md. Altaf-Ul-Amin
- Organizer
  Universidade Federal de São Paulo, Brazil
- Invited
- Data Source
  KAKENHI-PROJECT-17K00406
[Presentation] A Network based Approach to Predict Functions of Metabolites2018
- Author(s)
  Md. Altaf-Ul-Amin
- Organizer
  International Conference on Metabolomics,
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K00406

1. ONO Naoaki

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2. 遠藤智明

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3. 金谷重彦

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4. 齋藤朗

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5. 黄銘

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AMIN MD. ALTAFUL ＡＭＩＮ ＭＤ．ＡＬＴＡＦＵＬ

Research Projects

Research Products

Co-Researchers

On searching antimicrobial agents among natural products:Fighting against SuperbugPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

A big data approach to function prediction of metabolites by clustering of structural similarity networksPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] Recent Trends in Computational Research on Diseases2022

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Book] Applications of Network Clustering in Natural Product Research, In book: Reference Module in Chemistry, Molecular Sciences and Chemical Engineering2020

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Book] Databases for Natural Product Research, In book: Reference Module in Chemistry, Molecular Sciences and Chemical Engineering2020

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Book] Comprehensive Natural Products III: Chemistry and Biology.2020

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Book] Investigating Metabolic Pathways and Networks, In the book: Reference Module in Life Sciences2018

Author(s)

Total Pages

Publisher

Data Source

[Book] Volatile Organic Compound Analysis in Biomedical Diagnosis Applications(Chapter 9)2018

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Journal Article] Antibacterial Activity Prediction of Plant Secondary Metabolites Based on a Combined Approach of Graph Clustering and Deep Neural Network2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Development of a biomarker database toward performing disease classification and finding disease interrelations2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Identification of Targeted Proteins by Jamu Formulas for Different Efficacies Using Machine Learning Approach2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] DPClusSBO: An integrated software for clustering of simple and bipartite graphs2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Graph cluster approach in identifying novel proteins and significant pathways involved in polycystic ovary syndrome2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Discovery of inflammatory bowel disease-associated miRNAs using a novel bipartite clustering approach2020

Author(s)

Journal Title

DOI

AMIN MD. ALTAFUL ＡＭＩＮＭＤ．ＡＬＴＡＦＵＬ