Onimaru Koh 鬼丸洸

Researcher Number	30787065
Other IDs	https://orcid.org/0000-0002-2428-9510
Affiliation (based on the past Project Information) *help	2022 – 2023: 名古屋大学, 医学系研究科, 助教 2018 – 2019: 国立研究開発法人理化学研究所, 生命機能科学研究センター, 基礎科学特別研究員 2017: 国立研究開発法人理化学研究所, ライフサイエンス技術基盤研究センター, 研究員
Review Section/Research Field	Principal Investigator Basic Section 43060:System genome science-related / Developmental biology
Keywords	Principal Investigator 深層学習 / エピジェノミクス / 体細胞変異 / 非コード配列 / がんゲノム / 進化発生学 / ゲノム配列比較解析 / 次世代シーケンサー / 遺伝子制御 / 機械学習 … More / 転写制御 / ゲノム解析 / ディープラーニング / 転写制御配列 / 形態形成 Less

深層学習を用いた非コードゲノム配列のがんドライバー変異の探索Principal Investigator
- Principal Investigator
  
  鬼丸洸
- Project Period (FY)
  2022 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  Nagoya University
Development of transcriptional regulatory network prediction methods in morphogenesisPrincipal Investigator
- Principal Investigator
  
  Onimaru Koh
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Developmental biology
- Research Institution
  Institute of Physical and Chemical Research

All 2020 2019 2018 2017

All Journal Article Presentation

[Journal Article] The evolutionary origin of developmental enhancers in vertebrates: Insights from non‐model species2020
- Author(s)
  Koh Onimaru
- Journal Title
  
  Development, Growth & Differentiation
  
  Volume: － Issue: 5 Pages: 326-333
- DOI
  10.1111/dgd.12662
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K15132
[Journal Article] Developmental hourglass and heterochronic shifts in fin and limb development2020
- Author(s)
  Koh Onimaru、Kaori Tatsumi、Chiharu Tanegashima、Mitsutaka Kadota、Osamu Nishimura、Shigehiro Kuraku
- Journal Title
  
  bioRxiv
  
  Volume: －
- DOI
  10.1101/2020.01.10.901173
- Open Access
- Data Source
  KAKENHI-PROJECT-17K15132
[Journal Article] Systems biology approach to the origin of the tetrapod limb2019
- Author(s)
  Koh Onimaru, Luciano Marcon
- Journal Title
  
  arXiv
  
  Volume: arXiv:1907.02730
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15132
[Journal Article] A regulatory-sequence classifier with a neural network for genomic information processing2018
- Author(s)
  Onimaru Koh、Nishimura Osamu、Kuraku Shigehiro
- Journal Title
  
  bioRxiv
  
  Volume: - Pages: 355974-355974
- DOI
  10.1101/355974
- Open Access
- Data Source
  KAKENHI-PROJECT-17K15132
[Journal Article] A staging table for the embryonic development of the brownbanded bamboo shark (Chiloscyllium punctatum)2018
- Author(s)
  Onimaru Koh、Motone Fumio、Kiyatake Itsuki、Nishida Kiyonori、Kuraku Shigehiro
- Journal Title
  
  Developmental Dynamics
  
  Volume: 247 Issue: 5 Pages: 712-723
- DOI
  10.1002/dvdy.24623
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K07426, KAKENHI-PROJECT-17K15132, KAKENHI-PROJECT-17H03868
[Presentation] Omics approaches to the fin-to-limb evolution2019
- Author(s)
  Koh Onimaru, Kaori Tatsumi, Chiharu Tanegashima, Mitsutaka Kadota, Osamu Nishimura, Shigehiro Kuraku
- Organizer
  EMBO Workshop: Limb Development and Regeneration: New Tools for a Classic Model System EMBL Barcelona
- Data Source
  KAKENHI-PROJECT-17K15132
[Presentation] Deep learning を用いた転写因子結合配列の予測用いた転写因子結合配列の予測いた転写因子結合配列の予測転写因子結合配列の予測の予測予測2019
- Author(s)
  鬼丸洸
- Organizer
  Rinkai Hackathon 2019 with DDBJing
- Invited
- Data Source
  KAKENHI-PROJECT-17K15132
[Presentation] Systematic comparison of gene regulation in fin and limb development2019
- Author(s)
  Koh Onimaru, Kaori Tatsumi, Chiharu Tanegashima, Mitsutaka Kadota, Osamu Nishimura, Shigehiro Kuraku
- Organizer
  JAPANESE SOCIETY of DEVELOPMENTAL BIOLOGISTS
- Data Source
  KAKENHI-PROJECT-17K15132
[Presentation] Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information2019
- Author(s)
  Koh Onimaru, Osamu Nishimura, Shigehiro Kuraku
- Organizer
  2019年日本バイオインフォマティクス学会年会・第8回生命医薬情報学連合大会
- Data Source
  KAKENHI-PROJECT-17K15132
[Presentation] Genome-wide comparison of gene regulation in fin and limb development2019
- Author(s)
  Koh Onimaru, Kaori Tatsumi, Chiharu Tanegashima, Mitsutaka Kadota, Osamu Nishimura, Shigehiro Kuraku
- Organizer
  The 52th annual meeting of JSDB
- Data Source
  KAKENHI-PROJECT-17K15132
[Presentation] Sequence-based prediction of regulatory genomic regions with an improved deep-learning method2018
- Author(s)
  Koh Onimaru
- Organizer
  International Society for Computational Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15132
[Presentation] 複合的アプローチによる鰭から四肢への形態進化における分子機序の研究2017
- Author(s)
  鬼丸　洸
- Organizer
  遺伝研研究集会「進化遺伝学における実験的研究と理論的研究の融合」
- Invited
- Data Source
  KAKENHI-PROJECT-17K15132
[Presentation] A deeply conserved Turing mechanism in the fin and limb development2017
- Author(s)
  Koh Onimaru, Luciano Marcon, Marco Musy, Mikiko Tanaka, James Sharpe
- Organizer
  the Pan-American Society for Evolutionary Developmental Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15132

1. 工樂樹洋

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Onimaru Koh 鬼丸 洸

Research Projects

Research Products

Co-Researchers

深層学習を用いた非コードゲノム配列のがんドライバー変異の探索Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of transcriptional regulatory network prediction methods in morphogenesisPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] The evolutionary origin of developmental enhancers in vertebrates: Insights from non‐model species2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Developmental hourglass and heterochronic shifts in fin and limb development2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Systems biology approach to the origin of the tetrapod limb2019

Author(s)

Journal Title

Data Source

[Journal Article] A regulatory-sequence classifier with a neural network for genomic information processing2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] A staging table for the embryonic development of the brownbanded bamboo shark (Chiloscyllium punctatum)2018

Author(s)

Journal Title

DOI

Data Source

[Presentation] Omics approaches to the fin-to-limb evolution2019

Author(s)

Organizer

Data Source

[Presentation] Deep learning を用いた転写因子結合配列の予測用いた転写因子結合配列の予測いた転写因子結合配列の予測転写因子結合配列の予測の予測予測2019

Author(s)

Organizer

Data Source

[Presentation] Systematic comparison of gene regulation in fin and limb development2019

Author(s)

Organizer

Data Source

[Presentation] Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information2019

Author(s)

Organizer

Data Source

[Presentation] Genome-wide comparison of gene regulation in fin and limb development2019

Author(s)

Organizer

Data Source

[Presentation] Sequence-based prediction of regulatory genomic regions with an improved deep-learning method2018

Author(s)

Organizer

Data Source

[Presentation] 複合的アプローチによる鰭から四肢への形態進化における分子機序の研究2017

Author(s)

Organizer

Data Source

[Presentation] A deeply conserved Turing mechanism in the fin and limb development2017

Author(s)

Organizer

Data Source

Onimaru Koh 鬼丸洸