PIGOLOTTI Simone ＰＩＧＯＬＯＴＴＩＳｉｍｏｎｅ

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Pigolotti Simone PIGOLOTTI Simone

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Researcher Number	30812193
Affiliation (Current)	2025: 沖縄科学技術大学院大学, 生物複雑性ユニット, 教授
Affiliation (based on the past Project Information) *help	2022 – 2024: 沖縄科学技術大学院大学, 生物複雑性ユニット, 教授 2020 – 2021: 沖縄科学技術大学院大学, 生物複雑性ユニット, 准教授 2018 – 2019: 沖縄科学技術大学院大学, 生物学的複雑性ユニット, 准教授
Review Section/Research Field	Principal Investigator Basic Section 13040:Biophysics, chemical physics and soft matter physics-related / Basic Section 13010:Mathematical physics and fundamental theory of condensed matter physics-related
Keywords	Principal Investigator bacterial cell cycle / replisome / DNA replication / Statistical Physics / Biophysical models / Thermodynamics / thermodynamics / networks Information / tradeoff Chemical / Proofreading Speed-error … More / Polymerization Kinetic / Information theory / Chemical networks / Speed-error tradeoff / Kinetic Proofreading / Polymerization / Information processing Less

DNA replication dynamics in living bacteriaPrincipal Investigator
- Principal Investigator
  
  PIGOLOTTI Simone
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 13040:Biophysics, chemical physics and soft matter physics-related
- Research Institution
  Okinawa Institute of Science and Technology Graduate University
Optimal information processing in biophysical networksPrincipal Investigator
- Principal Investigator
  
  Pigolotti Simone
- Project Period (FY)
  2018 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 13010:Mathematical physics and fundamental theory of condensed matter physics-related
- Research Institution
  Okinawa Institute of Science and Technology Graduate University

All 2024 2023 2022 2021 2020 2019

All Journal Article Presentation

[Journal Article] Genome replication in asynchronously growing microbial populations2024
- Author(s)
  Pflug Florian G、Bhat Deepak、Pigolotti Simone
- Journal Title
  
  PLOS Computational Biology
  
  Volume: 20 Issue: 1 Pages: e1011753-e1011753
- DOI
  10.1371/journal.pcbi.1011753
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K25843
[Journal Article] Error-suppression mechanism of PCR by blocker strands2023
- Author(s)
  Hiroyuki Aoyanagi, Simone Pigolotti, Shinji Ono, Shoichi Toyabe
- Journal Title
  
  Biophysical Journal
  
  Volume: 122 Issue: 7 Pages: 1334-1341
- DOI
  10.1016/j.bpj.2023.02.028
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K03473, KAKENHI-PLANNED-18H05427
[Journal Article] Pareto optimal fronts of kinetic proofreading2023
- Author(s)
  Davide Chiuchiu, Shrabani Mondal, Simone Pigolotti
- Journal Title
  
  New Journal of Physics
  
  Volume: 25 Issue: 4 Pages: 0430007-0430007
- DOI
  10.1088/1367-2630/acc757
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K03473
[Journal Article] Physical bioenergetics: Energy fluxes, budgets, and constraints in cells2021
- Author(s)
  X. Yang, M. Heinemann, J. Howard, G. Huber, S. Iyer-Biswas, G. Le Treut, M. Lynch, K. L. Montooth, D. J. Needleman, S. Pigolotti, J. Rodenfels, P. Ronceray, S. Shankar, I. Tavassoly, S. Thutupalli, D. V. Titov, J. Wang, and P. J. Foster
- Journal Title
  
  Proc. Natl. Acad. Sci.
  
  Volume: 118 Issue: 26
- DOI
  10.1073/pnas.2026786118
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K03473
[Journal Article] Assembly of heteropolymers via a continuous reaction coordinate2019
- Author(s)
  D. Chiuchiu, J. Ferrare, S. Pigolotti
- Journal Title
  
  Phys. Rev. E 100, 062502, arXiv:1905.05490
  
  Volume: -
- Data Source
  KAKENHI-PROJECT-18K03473
[Journal Article] Error-speed correlations in biopolymer synthesis2019
- Author(s)
  D. Chiuchiu, Y. Tu, S. Pigolotti
- Journal Title
  
  Phys. Rev. Lett. 123, 038101, arXiv:1905.12869
  
  Volume: -
- Data Source
  KAKENHI-PROJECT-18K03473
[Presentation] Dynamics of genome replication2024
- Author(s)
  S. Pigolotti
- Organizer
  DPG-Verhandlungen 2024
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K25843
[Presentation] Speed variations of bacterial replisomes2024
- Author(s)
  S. Pigolotti
- Organizer
  OIST - JST Joint Workshop: Biomolecular Super Assembly Insights
- Invited
- Data Source
  KAKENHI-PROJECT-23K25843
[Presentation] Speed variations of bacterial replisomes2023
- Author(s)
  Simone Pigolotti
- Organizer
  APS March Meeting 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K03473
[Presentation] Speed variations of bacterial replisomes2023
- Author(s)
  S. Pigolotti
- Organizer
  NCTS STATPHYS28 Satelite Meeting
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K25843
[Presentation] Speed variations of bacterial replisomes2022
- Author(s)
  Simone Pigolotti
- Organizer
  The 3rd Workshop on Stochasticity and Fluctuations in Small Systems
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K03473
[Presentation] Thermodynamics of Error Correction2021
- Author(s)
  Simone Pigolotti
- Organizer
  Max-Planck Institute for Dynamics and Self-Organization
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K03473
[Presentation] Information processing in cells: from CRISPR to replisomes2021
- Author(s)
  Simone Pigolotti
- Organizer
  APCTP Frontiers in Theoretical Biophysics
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K03473
[Presentation] Thermodynamics of Error Correction2020
- Author(s)
  Simone Pigolotti
- Organizer
  ICTP (International Centre for Theoretical Physics)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K03473
[Presentation] Error-speed correlations in biopolymer synthesis2019
- Author(s)
  Simone Pigolotti
- Organizer
  the 57th Annual Meeting of the Biophysical Society of Japan in Miyazaki
- Invited
- Data Source
  KAKENHI-PROJECT-18K03473

1. CHIUCHIU Davide (40817491)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results

PIGOLOTTI Simone ＰＩＧＯＬＯＴＴＩ Ｓｉｍｏｎｅ

Pigolotti Simone PIGOLOTTI Simone

Research Projects

Research Products

Co-Researchers

DNA replication dynamics in living bacteriaPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Optimal information processing in biophysical networksPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Genome replication in asynchronously growing microbial populations2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Error-suppression mechanism of PCR by blocker strands2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Pareto optimal fronts of kinetic proofreading2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Physical bioenergetics: Energy fluxes, budgets, and constraints in cells2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Assembly of heteropolymers via a continuous reaction coordinate2019

Author(s)

Journal Title

Data Source

[Journal Article] Error-speed correlations in biopolymer synthesis2019

Author(s)

Journal Title

Data Source

[Presentation] Dynamics of genome replication2024

Author(s)

Organizer

Data Source

[Presentation] Speed variations of bacterial replisomes2024

Author(s)

Organizer

Data Source

[Presentation] Speed variations of bacterial replisomes2023

Author(s)

Organizer

Data Source

[Presentation] Speed variations of bacterial replisomes2023

Author(s)

Organizer

Data Source

[Presentation] Speed variations of bacterial replisomes2022

Author(s)

Organizer

Data Source

[Presentation] Thermodynamics of Error Correction2021

Author(s)

Organizer

Data Source

[Presentation] Information processing in cells: from CRISPR to replisomes2021

Author(s)

Organizer

Data Source

[Presentation] Thermodynamics of Error Correction2020

Author(s)

Organizer

Data Source

[Presentation] Error-speed correlations in biopolymer synthesis2019

Author(s)

Organizer

PIGOLOTTI Simone ＰＩＧＯＬＯＴＴＩＳｉｍｏｎｅ