YONEZAWA Yasushige 米澤康滋

… Alternative Names

米澤康滋ヨネザワヤスシゲ

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Researcher Number	40248753
Other IDs
Affiliation (Current)	2025: 近畿大学, 先端技術総合研究所, 教授
Affiliation (based on the past Project Information) *help	2012 – 2024: 近畿大学, 先端技術総合研究所, 教授 2006 – 2007: 大阪大学, 蛋白質研究所, 特任研究員 2005: 大阪大学, 蛋白質研究所, 特任助教授 2004: Osaka University, Institute for Protein Research, 蛋白質研究所, 産学官連携研究員・客員助教授 2000 – 2002: 筑波技術短期大学, 情報処理学科, 講師 … More 1998: 筑波技術短期大学, 情報処理科, 助手 1997: 筑波技術短期大学, 情報処理学科, 助手 1994: Tsukuba College of Technology, Research Associate, 助手 1993 – 1994: 筑波技術短期大学, 視覚部, 助手 1993: 筑波情報短期大学, 理学部, 助手 Less
Review Section/Research Field	Principal Investigator Biological Sciences / Biophysics Except Principal Investigator 情報システム学(含情報図書館学) / Biophysics / Biological Sciences / Basic Section 43040:Biophysics-related / Basic Section 48020:Physiology-related / Basic Section 43020:Structural biochemistry-related / Science and Engineering / Biological physics/Chemical physics/Soft matter physics
Keywords	Principal Investigator 分子シミュレーション / 分子動力学シミュレーション / 拡張アンサンブル法 / 熱安定性 / 蛋白質構造変化 / 構造機能 / CTR / CTD / 転写過程 / 転写サイクル … More / 機械学習 / 膜蛋白質 / 膜タンパク質 / 膜輸送機構 / プロトン透過 / 生体膜間物質輸送 / C末端領域 / 転写 / リン酸化 / CTD領域 / RNAポリメラーゼ / フォールディング / 蛋白質フォールディング / 構造空間探索 / 反応座標 / 蛋白質構造 / 蛋白質 / 構造情報解析 / PDBデータベース / 水和水 / 中性子結晶構造解析 / 酵母発現 / 中性子IP / ヒトリゾチーム / 相図 / 蛋白溶解度 / 蛋白結晶化 / 中性子結晶回析 … More Except Principal Investigator 分子シミュレーション / 分子動力学 / 生体分子 / タンパク質 / レアイベント / Molecular dynamics / 音声出力 / 分子動力学法 / 密度汎関数法 / 量子化学 / 蛋白質 / 酵素反応 / 生物物理 / 構造解析 / 電位センサータンパク質 / 膜タンパク質 / クライオ電子顕微鏡 / Ｘ線結晶構造解析 / 構造・機能解析 / 電位センサータンパク / 構造生物学 / 膜電位 / リン脂質 / イオンチャネル / 光分解性 / 非天然アミノ酸 / ホスホイノシチド / 電位センサー / イノシトールリン脂質 / イオンチャンネル / NMR / 分子運動性 / ガン創薬 / アロステリー / ヘム / 光化学系II / 半経験的分子軌道法 / 構造機能相関 / QM/MM計算 / 光合成光化学系II / ヘムタンパク質 / 金属タンパク質 / 活性サイト / 分子動力学シミュレーション / 化学物理 / 位相空間 / 平均力 / 自由エネルギー計算 / 機械学習 / レア・イベント / 自由エネルギー / Reaction free energy / Electron state / Molecular simulation / Quantum chemistry / Biological macromolecules / Enzymatic reaction / Biophysics / 反応自由エネルギー / 電子状態 / Algorithm of molecular simulation / MM calculation / Hybrid-QM / Link atom / Localized molecular orbital / Simulation calculation / Electron state of protein molecule / Quantum chemical calculation / QM / 分子計算アルゴリズム / MM-連成計算 / OM / リンク原子 / 局在化分子軌道 / シミュレーション計算 / 蛋白質の電子状態計算 / 分子動力学計算 / 量子化学計算 / Internet / Java Language / Text Editor / Speech Output / Braille Display Terminal / Braille / Software Development / Blindness / 非視覚的アクセス / 点字印刷ソフト / 点字表示機能付エディタ / JAVA開発環境 / 視覚障害 / インターネット / Java言語 / テキスト・エディタ / ピン・ディスプレイ装置 / 点字 / ソフトウェア開発 / 重度視覚障害 / Tactile Graphic Display / Tactile Mouse / User Interface / Human Interface / Screen Information / Personal Computer / Blind / Visually Impaired / ユーザ・インタデース / 触覚グラフィック / 触覚マウス / ユーザ・インタフェース / ヒューマン・インタフェース / 画面情報 / パソコン / 盲人 / 視覚障害者 / Braille Display Device / Voice Synthesizer / Bibliographic Databases / Compensation Equipments / Information Retrieval / 点字ディスプレイ / 文献データベース / 視覚障害補償機器 / 情報検索 / K-meson / X-ray spectroscopy / Exotic Atoms / Strong Interaction / High Energy Physics / 半導体検出器 / ストレンジネス / 中間子 / QCD / K中間子 / X線分光 / エキゾティック原子 / 強い相互作用 / 素粒子実験 / 蛋白質間相互作用 / プロテオーム / 構造・機能予測 / 分子軌道法 / モノアミン酸化酵素A / チトクロムc酸化酵素 / 生体超分子複合体 Less

新規アロステリック薬発見を目指したガン糖代謝関連タンパク質の動的分子構造解析
- Principal Investigator
  
  櫻井一正
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43020:Structural biochemistry-related
- Research Institution
  Kindai University
Regulation of ion channel by lipid molecules and structural recognition of phosphoinositide
- Principal Investigator
  
  岡村康司
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 48020:Physiology-related
- Research Institution
  Osaka University
Elucidation of the molecular mechanism of VSP, a voltage-dependent phosphatase that convert electrical signals into chemical signals
- Principal Investigator
  
  Nakagawa Atsushi
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43040:Biophysics-related
- Research Institution
  Osaka University
Prediction of rare events associated with biomolecules using mean force dynamics
- Principal Investigator
  
  Morishita Tetsuya
- Project Period (FY)
  2017 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biological physics/Chemical physics/Soft matter physics
- Research Institution
  National Institute of Advanced Industrial Science and Technology
A Simulation Study on the Mechanism of Membrane Voltage Depended Protein VSOPPrincipal Investigator
- Principal Investigator
  
  Yonezawa Yasushige
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  Kindai University
計算科学と情報科学によるCTD及びCTRの構造空間と転写因子認識機構の研究Principal Investigator
- Principal Investigator
  
  米澤康滋
- Project Period (FY)
  2015 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Kindai University
Elucidation of Structure-Function Relationship of Biological Active Sites and New Material Design by Molecular Simulation
- Principal Investigator
  
  Takano Yu
- Project Period (FY)
  2014 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  Hiroshima City University
  Osaka University
計算科学シミュレーションによるＣＴＤの構造特性から探る転写調節機構Principal Investigator
- Principal Investigator
  
  米澤康滋
- Project Period (FY)
  2013 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Kinki University
A hybrid extended ensemble simulation study on the folding process of proteinsPrincipal Investigator
- Principal Investigator
  
  YONEZAWA Yasushige
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  Kinki University
Quantitative computational and informatics studies on protein-protein interaction systems based on their dynamic structures
- Principal Investigator
  
  NAKAMURA Haruki
- Project Period (FY)
  2011 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  Osaka University
分子シミュレーション支援による生体超分子複合体の構造機能相関の理論的研究
- Principal Investigator
  
  TAKANO Yu
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Osaka University
Theortical study of free energy landscapes of biological macromolecules by the hybrid computation for electronic structure and molecular structure sampling
- Principal Investigator
  
  NAKAMURA Haruki
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  Osaka University
分子シミュレーション支援による生体超分子複合体の構造・機能解析
- Principal Investigator
  
  NAKAMURA Haruki
- Project Period (FY)
  2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Osaka University
Theoretical studies on the electronic states of biological system, applying the effect of protein and solvent molecules.
- Principal Investigator
  
  NAKAMURA Haruki
- Project Period (FY)
  2003 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  Osaka University
Research on Braille-Based Method of Software Development for Internet and on Skill Teaching of Software Development in Braille
- Principal Investigator
  
  NAGAOKA Hideji
- Project Period (FY)
  2001 – 2003
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  情報システム学(含情報図書館学)
- Research Institution
  Tsukuba College of Technology
Improvement of User-Interface for Blind PC Users
- Principal Investigator
  
  SHIMIZU Yutaka
- Project Period (FY)
  2000 – 2002
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  情報システム学(含情報図書館学)
- Research Institution
  University of Electro-Communications
  Tsukuba College of Technology
中性子結晶構造解析によるヒトリゾチーム安定性の研究Principal Investigator
- Principal Investigator
  
  米澤康滋
- Project Period (FY)
  1998
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Research Institution
  Tsukuba College of Technology
中性子結晶構造解析による配位水がリゾチーム立体構造安定性に及ぼす影響の研究Principal Investigator
- Principal Investigator
  
  米澤康滋
- Project Period (FY)
  1997
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  Tsukuba College of Technology
X-ray Spectrocopy of Kaonic Atoms
- Principal Investigator
  
  HAYANO Ryugo
- Project Period (FY)
  1993 – 1994
- Research Category
  
  Grant-in-Aid for international Scientific Research
- Research Institution
  University of Tokyo
Development of Information Retrieval Interface Program for Visually Impaired Prersons
- Principal Investigator
  
  MIYAKE Terihisa
- Project Period (FY)
  1993 – 1994
- Research Category
  
  Grant-in-Aid for General Scientific Research (C)
- Research Field
  
  情報システム学(含情報図書館学)
- Research Institution
  Tsukuba College of Technology

[Journal Article] Distinct NMR Views Leverage New Strategies in Drug Discovery2024
- Author(s)
  井上直也、白木琢磨、米澤康滋、櫻井一正
- Journal Title
  
  近畿大学先端技術総合研究所紀要
  
  Volume: 29 Issue: 29 Pages: 1-9
- DOI
  10.15100/0002000987
- ISSN
  13468693
- URL
  https://kindai.repo.nii.ac.jp/records/2000987
- Year and Date
  2024-03-31
- Language
  Japanese
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K06106
[Journal Article] How to expand the scale and diversity of chemical library2023
- Author(s)
  Kiyooka, K., Sakurai, K., Yonezawa, Y. and Shiraki, T.
- Journal Title
  
  Memoirs of Institute of Advanced Technology, Kindai University
  
  Volume: 28 Pages: 1-13
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K06106
[Journal Article] Interaction between S4 and the phosphatase domain mediates electrochemical coupling in voltage-sensing phosphatase (VSP)2022
- Author(s)
  Mizutani Natsuki、Kawanabe Akira、Jinno Yuka、Narita Hirotaka、Yonezawa Tomoko、Nakagawa Atsushi、Okamura Yasushi
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 119 Issue: 26 Pages: 2200364119-2200364119
- DOI
  10.1073/pnas.2200364119
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K06170, KAKENHI-PROJECT-21K19350, KAKENHI-PUBLICLY-22H05570, KAKENHI-PROJECT-19K06585, KAKENHI-ORGANIZER-20H05787, KAKENHI-PLANNED-20H05791, KAKENHI-PROJECT-21H02444, KAKENHI-PROJECT-23K24066
[Journal Article] Path ensembles for Pin1-catalyzed cis-trans isomerization of a substrate calculated by weighted ensemble simulations2021
- Author(s)
  Kei Moritsugu, Norifumi Yamamoto, Yasushige Yonezawa, Shin-ichi Tate, and Hiroshi Fujisaki
- Journal Title
  
  Journal of Chemical Theory and Computation
  
  Volume: 17 Issue: 4 Pages: 2522-2529
- DOI
  10.1021/acs.jctc.0c01280
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K03883, KAKENHI-PROJECT-17KT0101, KAKENHI-PROJECT-17K05620, KAKENHI-PROJECT-19H03168, KAKENHI-PROJECT-21K18234
[Journal Article] Autoencoder-based detection of the residues involved in G protein-coupled receptor signaling2021
- Author(s)
  Tsuchiya Yuko、Taneishi Kei、Yonezawa Yasushige
- Journal Title
  
  Scientific Reports
  
  Volume: 11 Issue: 1 Pages: 19867-19867
- DOI
  10.1038/s41598-021-99019-z
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K05620, KAKENHI-PROJECT-17K00405
[Journal Article] Mutual information analysis of the dynamic correlation between side chains in proteins2021
- Author(s)
  Miyashita Naoyuki、Yonezawa Yasushige
- Journal Title
  
  The Journal of Chemical Physics
  
  Volume: 155 Issue: 4 Pages: 044107-044107
- DOI
  10.1063/5.0055662
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K05620, KAKENHI-PROJECT-21K12115
[Journal Article] Rebuilding Ring-Type Assembly of Peroxiredoxin by Chemical Modification2020
- Author(s)
  Himiyama Tomoki、Tsuchiya Yuko、Yonezawa Yasushige、Nakamura Tsutomu
- Journal Title
  
  Bioconjugate Chemistry
  
  Volume: 32 Issue: 1 Pages: 153-160
- DOI
  10.1021/acs.bioconjchem.0c00587
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K05620, KAKENHI-PROJECT-20K05740, KAKENHI-PROJECT-20K15403
[Journal Article] Epigenetic Protection of Vertebrate Lymphoid Progenitor Cells by Dnmt12020
- Author(s)
  Iwanami Norimasa、Takeshita Kohei、Lawir Divine-Fondzenyuy、Suetake Isao、Tajima Shoji、Sikora Katarzyna、Trancoso In?s、?Meara Connor、Siamishi Iliana、Takahama Yousuke、Furutani-Seiki Makoto、Kondoh Hisato、Yonezawa Yasushige、Schorpp Michael、Boehm Thomas
- Journal Title
  
  iScience
  
  Volume: 23 Issue: 7 Pages: 101260-101260
- DOI
  10.1016/j.isci.2020.101260
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K05620, KAKENHI-PROJECT-18K06095, KAKENHI-PROJECT-20K08956
[Journal Article] Atomistic detailed free‐energy landscape of intrinsically disordered protein studied by multi‐scale divide‐and‐conquer molecular dynamics simulation2020
- Author(s)
  Shimoyama Hiromitsu、Yonezawa Yasushige
- Journal Title
  
  Journal of Computational Chemistry
  
  Volume: 42 Issue: 1 Pages: 19-26
- DOI
  10.1002/jcc.26429
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K05620
[Journal Article] Loosening of Side-Chain Packing Associated with Perturbations in Peripheral Dynamics Induced by the D76N Mutation of β2-Microglobulin Revealed by Pressure-NMR and Molecular Dynamic Simulations2019
- Author(s)
  Sakurai Kazumasa、Tomiyama Ryosuke、Shiraki Takuma、Yonezawa Yasushige
- Journal Title
  
  Biomolecules
  
  Volume: 9 Issue: 9 Pages: 491-491
- DOI
  10.3390/biom9090491
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K05620
[Journal Article] Autoencoder-Based Detection of Dynamic Allostery Triggered by Ligand Binding Based on Molecular Dynamics2019
- Author(s)
  Yuko Tsuchiya, Kei Taneishi, Yasushige Yonezawa
- Journal Title
  
  J. Chem. Inf. Model.
  
  Volume: 59 Issue: 9 Pages: 4043-4051
- DOI
  10.1021/acs.jcim.9b00426
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K00405, KAKENHI-PROJECT-17K05620
[Journal Article] On-the-fly analysis of molecular dynamics simulation trajectories of proteins using the Bayesian inference method2017
- Author(s)
  Miyashita Naoyuki、Yonezawa Yasushige
- Journal Title
  
  The Journal of Chemical Physics
  
  Volume: 147 Issue: 12 Pages: 124108-124108
- DOI
  10.1063/1.4997099
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K00421, KAKENHI-INTERNATIONAL-15K21719, KAKENHI-PLANNED-26105012
[Journal Article] Free Energy Reconstruction from Logarithmic Mean-Force Dynamics Using Multiple Nonequilibrium Trajectories2017
- Author(s)
  Morishita Tetsuya、Yonezawa Yasushige、Ito Atsushi M.
- Journal Title
  
  Journal of Chemical Theory and Computation
  
  Volume: 13 Issue: 7 Pages: 3106-3119
- DOI
  10.1021/acs.jctc.7b00252
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K05620, KAKENHI-PROJECT-15H05563
[Journal Article] Substrate recognition of N,N′-diacetylchitobiose deacetylase from Pyrococcus horikoshii2016
- Author(s)
  Tsutomu Nakamura, Yasushige Yonezawa, Yuko Tsuchiya, Mayumi Niiyama, Kurumi Ida, Maki Oshima, Junji Morita, Koichi Uegaki
- Journal Title
  
  Journal of Structural Biology
  
  Volume: ３ Issue: 3 Pages: 286-293
- DOI
  10.1016/j.jsb.2016.07.015
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-15H01360, KAKENHI-PROJECT-15K01815, KAKENHI-PROJECT-15K07037
[Journal Article] Direct Interaction between the Voltage-sensors Produces Cooperative Sustained Deactivation in Voltage-gated H+ Channel Dimers.2016
- Author(s)
  Okuda H, Yonezawa Y, Takano Y, Okamura Y, Fujiwara Y.
- Journal Title
  
  Journal of Biological Chemistry
  
  Volume: 291 Issue: 11 Pages: 5935-5947
- DOI
  10.1074/jbc.m115.666834
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K07037, KAKENHI-PUBLICLY-26111712, KAKENHI-ORGANIZER-15H05897, KAKENHI-PROJECT-25253016, KAKENHI-PROJECT-25670108, KAKENHI-PROJECT-26291030, KAKENHI-PLANNED-15H05901
[Journal Article] A method for predicting protein conformational pathways by using molecular dynamics simulations guided by difference distance matrices2016
- Author(s)
  Yasushige Yonezawa
- Journal Title
  
  Journal of Computational Chemistry
  
  Volume: 37 Issue: 13 Pages: 1139-1146
- DOI
  10.1002/jcc.24296
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15K07037, KAKENHI-PUBLICLY-15H01360, KAKENHI-ORGANIZER-26105001, KAKENHI-PLANNED-26105012, KAKENHI-INTERNATIONAL-15K21719
[Journal Article] Development of Massive Multilevel Molecular Dynamics Simulation Program, Platypus (PLATform for dYnamic Protein Unified Simulation), for the Elucidation of Protein2016
- Author(s)
  Takano Y, Nakata K, Yonezawa Y, Nakamura H
- Journal Title
  
  Journal of Computational Chemistry
  
  Volume: 37 Issue: 12 Pages: 1125-1132
- DOI
  10.1002/jcc.24318
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-ORGANIZER-24118001, KAKENHI-PLANNED-24118008, KAKENHI-ORGANIZER-26105001, KAKENHI-PLANNED-26105012
[Journal Article] Molecular Dynamics Study of the Phosphorylation Effect on the Conformational States of the C-terminal Domain of RNA Polymerase II2014
- Author(s)
  Y.Yonezawa
- Journal Title
  
  J. Phys. Chem.　B
  
  Volume: 118 Issue: 17 Pages: 4471-4478
- DOI
  10.1021/jp4101976
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24570189, KAKENHI-PUBLICLY-25118521
[Journal Article] Electrostatic properties of water models evaluated by a long-range potential based solely on the Wolf charge-neutral condition2013
- Author(s)
  Yasushige Yonezawa
- Journal Title
  
  Chemical Physics Letter
  
  Volume: 556 Pages: 308-314
- DOI
  10.1016/j.cplett.2012.12.028
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24570189
[Journal Article] Simple and Accurate Scheme to Compute Electrostatic Interactions: Zero-dipole Summation Technique for Molecular System and Application to Bulk Water.2012
- Author(s)
  Ikuo Fukuda, Narutoshi Kamiya, Yasushige Yonezawa, Haruki Nakamura
- Journal Title
  
  Journal of Chemical Physics
  
  Volume: 137 Issue: 5 Pages: 54314-54314
- DOI
  10.1063/1.4739789
- NAID
  120005647641
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370071, KAKENHI-PLANNED-24118008, KAKENHI-ORGANIZER-24118001
[Journal Article] Protein-inhibitor flexible docking by a multicanonical sampling : Native complex structure with the lowest free energy and a free-energy barrier distrinsuishing the native complex from the others2008
- Author(s)
  N., Kamiya, Y., Yonezawa, H., Nakamura, J., Higo
- Journal Title
  
  PROTEINS 70 (1)
  
  Pages: 41-53
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18370063
[Journal Article] Application of MDGRAPE-3, a special purpose board for molecular dynamics simulations, to periodic biomolecular systems2008
- Author(s)
  G., Kikugawa, R., Apostolov, N., Kamiya, M., Taiji, R., Himeno, H., Nakamura, Y., Yonezawa
- Journal Title
  
  Journal of Computational Chemistry 29 (in press)
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18370063
[Journal Article] Molecular Dynamics Simulation Study on Water Associated with π-electrons of Benzene by using QM/MM Potential2006
- Author(s)
  Y., Yonezawa, K, Nakata, T., Takada, H., Nakamura
- Journal Title
  
  Chemical Physics Letters 428 (1-3)
  
  Pages: 73-77
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18370063
[Journal Article] Molecular Dynamics Simulation Study on Water Associated with π-electrons of Benzene by using QM/MM Potential.2006
- Author(s)
  Yonezawa, Yasushige
- Journal Title
  
  Chemical Physics Letters 428
  
  Pages: 73-77
- Description
  「研究成果報告書概要(和文)」より
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18370063
[Journal Article] Molecular Dynamics Simulation Study on Water Associated with π-electrons of Benzene by using QM/MM Potential.2006
- Author(s)
  Y.Yonezawa, K, Nakata, T.Takada, H.Nakamura
- Journal Title
  
  Chemical Physics Letters Vol. 428, No. 1-3
  
  Pages: 73-77
- Data Source
  KAKENHI-PROJECT-18370063
[Journal Article] Molecular dynamics simulation study on water associated with π-electrons of benzene by using QM/MM potential.2006
- Author(s)
  Yonezawa, Y., Nakata, K., Takada, T., Nakamura, H.
- Journal Title
  
  Chemical Physics Letters 428
  
  Pages: 73-77
- Data Source
  KAKENHI-PROJECT-18054013
[Presentation] PI(4,5)P2 regulates GABAAR channel activity through residue K312 of the α1 subunit2023
- Author(s)
  Risa Mori-Kreiner, Takafumi Kawai, Naoyuki Miyashita, Yasushige Yonezawa, Yasushi Okamura
- Organizer
  The 100th Anniversary Annual Meeting of The Physiological Society of Japan
- Data Source
  KAKENHI-PROJECT-23K24066
[Presentation] 電位依存性ホスファターゼVSPは電位センサー・酵素両ドメイン間の直接相互作用により分子内で膜電位情報を酵素活性に変換する2022
- Author(s)
  水谷夏希、川鍋陽、神野有香、成田宏隆、米澤智子、中川敦史、岡村康司
- Organizer
  生理研研究会「構造情報を基盤とした膜機能分子の生理機能理解に向けて」
- Data Source
  KAKENHI-PROJECT-23K24066
[Presentation] オートエンコーダーに基づく GPCR シグナル伝達経路解析2021
- Author(s)
  土屋裕子、種石慶、米澤康滋
- Organizer
  蛋白質科学会ワークショップ
- Data Source
  KAKENHI-PROJECT-17K05620
[Presentation] 計算科学シミュレーションを用いたタンパク質及びタンパク質複合体の動的相関解析の困難と新たな試み2021
- Author(s)
  米澤康滋
- Organizer
  蛋白質科学会ワークショップ
- Data Source
  KAKENHI-PROJECT-17K05620
[Presentation] Autoencoder-based analysis of dynamic allostery on proteins by regulator binding2019
- Author(s)
  Y. Tsutiya, T. Taneishi, Y.Yonezawa
- Organizer
  CBI学会2019年大会
- Data Source
  KAKENHI-PROJECT-17K05620
[Presentation] Conformational Changes and Interactions of Calcium Ion Signal Transfer Protein Calmodulin and Calmodulin-binding Domains by Multi-scale and Docking Simulation2019
- Author(s)
  H.Shimoyama, Y.Yonezawa
- Organizer
  第57回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-17K05620
[Presentation] Influence on the structure and dynamics of Riboswich “SPANISH” and potassium ions by DFHBI2019
- Author(s)
  L.Matsukura, N. Onishi, M.Furue, N.Miyashita, T.SHiraki, Y.Yonezawa
- Organizer
  第57回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-17K05620
[Presentation] Conformational Changes and Interact ions of Calcium Ion Signal Transfer Protein Calmodulin and Calmodulin-binding Domain by Multi-scale and Docking Simulation2019
- Author(s)
  Hiromitsu Shimoyama, Yasushige Yonezawa
- Organizer
  CBI学会2019年大会
- Data Source
  KAKENHI-PROJECT-17K05620
[Presentation] Autoencoder-based analysis of dynamic allostery on proteins by regulator binding2019
- Author(s)
  Y. Tsutiya, T. Taneishi, Y.Yonezawa
- Organizer
  第57回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-17K05620
[Presentation] ベイズ推定によるOn-the-fly MDシミュレーション平均構造決定及び動的解析方法2018
- Author(s)
  米澤康滋
- Organizer
  第18回蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-17K05620
[Presentation] ベイズ推定によるon-the-fly 構造重ね合わせと構造解析2018
- Author(s)
  米澤康滋・鷹野優
- Organizer
  新学術領域「３Ｄ活性サイト科学」第7回成果報告会
- Data Source
  KAKENHI-PLANNED-26105012
[Presentation] タンパク質のダイナミックアロステリー2018
- Author(s)
  米澤康滋
- Organizer
  第32回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-17K05620
[Presentation] Pin1由来のタンパク質分解酵素の触媒部位の構造ダイナミクス2018
- Author(s)
  伊倉貞吉、米澤康滋、伊藤暢聡
- Organizer
  第18回蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-17K05620
[Presentation] ベイズ推定によるon-the-fly平均構造-共分散行列による数理解析手法の開発2018
- Author(s)
  米澤康滋
- Organizer
  第21回理論化学討論会
- Data Source
  KAKENHI-PROJECT-17K05620
[Presentation] 電位依存性プロトンチャネルの機能・構造解析2017
- Author(s)
  岩城雅代, 神取秀樹, 近藤寛子, 米澤康滋, 鷹野優,岡村康司, 有馬大貴, 中川敦史
- Organizer
  CREST領域会議
- Data Source
  KAKENHI-PROJECT-15K07037
[Presentation] Elucidation of Structure-Function Relationship of Biological Active Sites and New Material Design by Molecular Simulation2017
- Author(s)
  Yu Takano, Hiroshi Ishikita, Yasushige Yonezawa, Yasuteru Shigeta, Takahisa Yamato, Katsumasa Kamiya, Mitsuo Shoji, Toru Saito, Yusuke Kanematsu
- Organizer
  Swedish-Japanese Workshop on Nano-Structure Science by Novel Light Sources
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-26105012
[Presentation] 差分距離行列によるタンパク質構造変化の研究2017
- Author(s)
  米澤康滋
- Organizer
  第55回生物物理学会
- Data Source
  KAKENHI-PROJECT-15K07037
[Presentation] 非平衡パスアンサンブルに基づく対数平均力ダイナミクス2017
- Author(s)
  森下徹也、米澤康滋、伊藤篤史
- Organizer
  第31回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-17K05620
[Presentation] 教師なし学習法によるタンパク質構造変化の解析2017
- Author(s)
  米澤康滋
- Organizer
  第17回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-15K07037
[Presentation] MD シミュレーションによるタンパク質動的性質の解析手法2017
- Author(s)
  米澤康滋
- Organizer
  蛋白研セミナー「膜イオン輸送の学際研究計算科学から医学まで」
- Invited
- Data Source
  KAKENHI-PROJECT-15K07037
[Presentation] 電位依存性プロトンチャネルVSOP/Hv1の電場中での動態の解析2017
- Author(s)
  近藤寛子，米澤康滋，宮下尚之，岩城雅代，竹下浩平，藤原祐一郎，城田松之，木下賢吾，岡村康司，中川敦史，神取秀樹，鷹野優
- Organizer
  第55回生物物理学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-15K07037
[Presentation] ベイズ推定によるon-the-fly MDトラジェクトリー解析方法の開発2017
- Author(s)
  米澤康滋、宮下尚之
- Organizer
  第31回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-15K07037
[Presentation] 差分距離行列情報による蛋白質構造変化探索の新手法2016
- Author(s)
  米澤康滋
- Organizer
  理論化学討論会
- Place of Presentation
  東京都新宿区早稲田大学西早稲田キャンパス
- Year and Date
  2016-05-24
- Data Source
  KAKENHI-PROJECT-15K07037
[Presentation] 脂質二重膜におけるPI(4,5)P2の安定性の解析2016
- Author(s)
  近藤寛子,米澤康滋, 木下賢吾,鷹野優
- Organizer
  分子シミュレーション討論会
- Place of Presentation
  大阪府豊中市　大阪大学豊中キャンパス
- Year and Date
  2016-11-30
- Data Source
  KAKENHI-PROJECT-15K07037
[Presentation] 蛋白質構造変化探索の新手法2016
- Author(s)
  米澤康滋
- Organizer
  日本蛋白質科学会年会
- Place of Presentation
  福岡県福岡市福岡国際会議場
- Year and Date
  2016-06-08
- Data Source
  KAKENHI-PROJECT-15K07037
[Presentation] A detailed analysis of the binding mode of a zinc ion to the voltage-gated proton channel VSOP/Hv12016
- Author(s)
  近藤寛子・岩城雅代・兼松佑典・城田松之・米澤康滋・木下賢吾・神取秀樹・鷹野優
- Organizer
  日本生物物理学会
- Place of Presentation
  茨城県つくば市　つくば国際会議場
- Year and Date
  2016-11-27
- Data Source
  KAKENHI-PROJECT-15K07037
[Presentation] 分子動力学シミュレーションと多変量解析による転写因子足場蛋白質の研究2016
- Author(s)
  米澤康滋
- Organizer
  分子シミュレーション討論会
- Place of Presentation
  大阪府豊中市大阪大学豊中キャンパス
- Year and Date
  2016-11-30
- Data Source
  KAKENHI-PUBLICLY-15H01360
[Presentation] 分子動力学シミュレーションによるSpt5-CTR領域構造へのリン酸化の影響2016
- Author(s)
  米澤康滋
- Organizer
  分子科学討論会
- Place of Presentation
  兵庫県神戸市神戸ファッションマート
- Year and Date
  2016-09-14
- Data Source
  KAKENHI-PUBLICLY-15H01360
[Presentation] 脂質二重膜におけるPI(4,5)P2の安定性の解析2016
- Author(s)
  近藤寛子・米澤康滋・木下賢吾・鷹野優
- Organizer
  分子シミュレーション討論会
- Place of Presentation
  大阪大学
- Data Source
  KAKENHI-PLANNED-26105012
[Presentation] 差分距離行列情報によるたんぱく質のコンフォメーション変化探索法2016
- Author(s)
  米澤康滋
- Organizer
  蛋白研セミナー
- Place of Presentation
  東京大学（東京都目黒区）
- Year and Date
  2016-03-01
- Invited
- Data Source
  KAKENHI-PUBLICLY-15H01360
[Presentation] 生体活性サイトの機能解明に向けた分子計算技術の開発2015
- Author(s)
  米澤康滋・鷹野優
- Organizer
  新学術領域「3D活性サイト科学」第1回成果報告会
- Place of Presentation
  国際高等研究所（京都府木津川市）
- Year and Date
  2015-03-14
- Data Source
  KAKENHI-PLANNED-26105012
[Presentation] 新規尺度によるたんぱく質構造変化パスの構築方法2015
- Author(s)
  米澤康滋
- Organizer
  第29回分子シミュレーション討論会
- Place of Presentation
  朱鷺メッセ（新潟県新潟市）
- Year and Date
  2015-11-30
- Data Source
  KAKENHI-PUBLICLY-15H01360
[Presentation] Molecular dynamics simulations of the effect of zinc on the voltage-gated proton channel VSOP2015
- Author(s)
  近藤寛子, 城田松之, 米澤康滋, 鷹野優, 木下賢吾
- Organizer
  第53回日本生物物理学会年会
- Place of Presentation
  金沢大学（石川県金沢市）
- Year and Date
  2015-09-15
- Invited
- Data Source
  KAKENHI-PROJECT-15K07037
[Presentation] 蛋白質構造変化経路探索の新手法2015
- Author(s)
  米澤康滋
- Organizer
  計算統計物理学研究会
- Place of Presentation
  名古屋大学（愛知県名古屋市）
- Year and Date
  2015-11-22
- Invited
- Data Source
  KAKENHI-PUBLICLY-15H01360
[Presentation] RNAポリメラーゼC末端領域構造の分子シミュレーション研究2014
- Author(s)
  米澤康滋
- Organizer
  第8回分子科学討論会
- Place of Presentation
  広島大学（広島県東広島市）
- Year and Date
  2014-09-22
- Data Source
  KAKENHI-PUBLICLY-25118521
[Presentation] COMPUTATIONAL STUDY ON THE DYNAMIC CONFORMATIONAL CHANGE OF C-TERMINAL DOMAIN OF RNA POLRIMERASE II2014
- Author(s)
  米澤康滋
- Organizer
  「動的秩序と機能」第2回公開国際シンポジウム
- Place of Presentation
  キャンパスプラザ京都(京都府京都市）
- Data Source
  KAKENHI-PUBLICLY-25118521
[Presentation] マルチカノニカル分子動力学法によるRNAポリメラーゼII-C末端領域の構造空間探索2014
- Author(s)
  米澤康滋
- Organizer
  分子シミュレーション討論会
- Place of Presentation
  仙台市民会館（宮城県仙台市）
- Year and Date
  2014-11-14
- Data Source
  KAKENHI-PUBLICLY-25118521
[Presentation] HPC と蛋白質分子計算科学シミュレーション2014
- Author(s)
  米澤康滋
- Organizer
  筑波大学計算科学センターセミナー
- Place of Presentation
  筑波大学計算科学センター（茨城県つくば市）
- Year and Date
  2014-11-07
- Invited
- Data Source
  KAKENHI-PROJECT-24570189
[Presentation] マルチカノニカル分子動力学法によるRNAポリメラーゼII-C末端領域の構造空間探索2014
- Author(s)
  米澤康滋
- Organizer
  分子シミュレーション討論会
- Place of Presentation
  仙台市民会館（宮城県仙台市）
- Year and Date
  2014-11-14
- Data Source
  KAKENHI-PROJECT-24570189
[Presentation] RNAポリメラーゼC末端領域構造の分子シミュレーション研究2014
- Author(s)
  米澤康滋
- Organizer
  第8回分子科学討論会
- Place of Presentation
  広島大学（広島県東広島市）
- Year and Date
  2014-09-22
- Data Source
  KAKENHI-PROJECT-24570189
[Presentation] 分子動力学シミュレーションによる真核生物RNAポリメラーゼIIのC末端領域の構造特性の研究2014
- Author(s)
  米澤康滋
- Organizer
  第41回生体分子科学討論会
- Place of Presentation
  九州大学西新プラザ（福岡県福岡市）
- Year and Date
  2014-06-07
- Data Source
  KAKENHI-PROJECT-24570189
[Presentation] COMPUTATIONAL STUDY ON THE DYNAMIC CONFORMATIONAL CHANGE OF C-TERMINAL DOMAIN OF RNA POLRIMERASE II2014
- Author(s)
  米澤康滋
- Organizer
  「動的秩序と機能」第2回公開国際シンポジウム
- Place of Presentation
  キャンパスプラザ京都（京都府京都市）
- Data Source
  KAKENHI-PROJECT-24570189
[Presentation] HPC と蛋白質分子計算科学シミュレーション2014
- Author(s)
  米澤康滋
- Organizer
  筑波大学計算科学センターセミナー
- Place of Presentation
  筑波大学計算科学センター(茨城県つくば市)
- Year and Date
  2014-11-07
- Invited
- Data Source
  KAKENHI-PUBLICLY-25118521
[Presentation] 生体高分子生化学的機能解析のための並列古典/量子力学連成分子動力学シミュレーションプログラムの開発2014
- Author(s)
  米澤康滋・鷹野優・中田一人・山中秀介・中村春木
- Organizer
  第1回「3D活性サイト科学」公開ワークショップ
- Place of Presentation
  CIVI研修センター新大阪東（大阪府大阪市）
- Year and Date
  2014-11-21
- Data Source
  KAKENHI-PLANNED-26105012
[Presentation] 構造と機能に関わる蛋白質の自由エネルギー地形探索2013
- Author(s)
  米澤康滋
- Organizer
  化学反応経路探索のニューフロンティア2013
- Place of Presentation
  福井謙一記念研究センター(京都府京都市）
- Invited
- Data Source
  KAKENHI-PROJECT-24570189
[Presentation] Study on the C-terminal domain of eukaryotic RNA polymerase II by2013
- Author(s)
  米澤康滋
- Organizer
  第3回分子シミュレーション国際学会（ICMS2013）
- Place of Presentation
  神戸国際会議場（兵庫県神戸市）
- Data Source
  KAKENHI-PROJECT-24570189
[Presentation] Study on the C-terminal domain of eukaryotic RNA polymerase II by2013
- Author(s)
  米澤康滋
- Organizer
  第3回分子シミュレーション国際学会（ICMS2013）
- Place of Presentation
  神戸国際会議場(兵庫県神戸市）
- Data Source
  KAKENHI-PUBLICLY-25118521
[Presentation] マルチカノニカル法によるRNAポリメラーゼC末端領域の研究2013
- Author(s)
  米澤康滋
- Organizer
  第7回分子科学討論会
- Place of Presentation
  京都テルサ(京都府京都市）
- Data Source
  KAKENHI-PUBLICLY-25118521
[Presentation] 構造と機能に関わる蛋白質の自由エネルギー地形探索2013
- Author(s)
  米澤康滋
- Organizer
  化学反応経路探索のニューフロンティア2013
- Place of Presentation
  福井謙一記念研究センター(京都府京都市）
- Invited
- Data Source
  KAKENHI-PUBLICLY-25118521
[Presentation] マルチカノニカル法によるRNAポリメラーゼC末端領域の研究2013
- Author(s)
  米澤康滋
- Organizer
  第7回分子科学討論会
- Place of Presentation
  京都テルサ(京都府京都市)
- Data Source
  KAKENHI-PROJECT-24570189
[Presentation] Flexible docking between enzyme and inhibitor by multicanonical molecular dynamics2007
- Author(s)
  N., Kamiya, Y., Yonezawa, H., Nakamura, J., Higo
- Organizer
  7'th Annual Meeting of Protein Science Society of Japan
- Place of Presentation
  Sendai International Center, Sendai
- Year and Date
  2007-05-25
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18370063
[Presentation] A Computational Study of Monoamine Oxidase A Dynamics2007
- Author(s)
  R., Apostolov, Y., Yonezawa, H., Nakamura
- Organizer
  45'th Annual Meeting of Biophysical Society of Japan
- Place of Presentation
  Pacifico Yokohama, Yokohama
- Year and Date
  2007-12-21
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18370063
[Presentation] A QM/MM molecular dynamics study on peptidyl-prolyl isomerase Pinl2007
- Author(s)
  Y., Yonezawa, N., Kamiya, T., Takada, H., Nakamura
- Organizer
  7'th Annual Meeting of Protein Science Society of Japan
- Place of Presentation
  Sendai International Center, Sendai
- Year and Date
  2007-05-25
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18370063
[Presentation] A Computational Study of Monoamine Oxidase A Dynamics2007
- Author(s)
  R., Apostolov, Y., Yonezawa, H., Nakamura
- Organizer
  7'th Annual Meeting of Protein Science Society of Japan
- Place of Presentation
  Sendai International Center, Sendai
- Year and Date
  2007-05-25
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18370063
[Presentation] QM/MM study on catalytic mechanism of PPIase protein Pinl2006
- Author(s)
  Y., Yonezawa, N., Kamiya, H., Nakamura
- Organizer
  EABS &BSJ
- Place of Presentation
  Okinawa Convention Center, Ginowan, Okinawa
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18370063
[Presentation] Large-scale molecular dynamics simulations with the pariwise electrostatic interaction method for protein-solvent systems2006
- Author(s)
  G., Kikugwa, Y., Yonezawa, H., Nakamura, R., Himeno
- Organizer
  EABS &BSJ
- Place of Presentation
  Okinawa Convention Center, Ginowan, Okinawa
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18370063
[Presentation] 分子動力学シミュレーションによる真核生物RNAポリメラーゼIIのC末端領域の構造特性の研究
- Author(s)
  米澤康滋
- Organizer
  第41回生体分子科学討論会
- Place of Presentation
  九州大学西新プラザ（福岡県福岡市）
- Year and Date
  2014-06-06 – 2014-06-07
- Data Source
  KAKENHI-PUBLICLY-25118521
[Presentation] Dynamical Aspects of MAOA function : Membrane Attachment Facilitates Ligand Access
- Author(s)
  R., Apostolov, Y., Yonezawa, H., Nakamura
- Organizer
  Perspective in Structural Biology of Membrane Proteins and Biological Macromolecules
- Place of Presentation
  Osaka University, Osaka
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18370063
[Presentation] RNA ポリメラーゼ II の C 末端領域の分子シミュレーションによる構造空間解析
- Author(s)
  米澤康滋
- Organizer
  第17回理論化学討論会
- Place of Presentation
  名古屋大学（愛知県名古屋市）
- Year and Date
  2014-05-22 – 2014-05-24
- Data Source
  KAKENHI-PROJECT-24570189
[Presentation] RNA ポリメラーゼ II の C 末端領域の分子シミュレーションによる構造空間解析
- Author(s)
  米澤康滋
- Organizer
  第17回理論化学討論会
- Place of Presentation
  名古屋大学（愛知県名古屋市）
- Year and Date
  2014-05-22 – 2014-05-24
- Data Source
  KAKENHI-PUBLICLY-25118521

1. NAKAMURA Haruki (80134485)

# of Collaborated Projects: 5 results

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2. TAKANO Yu (30403017)

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13. SALOMON M.

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58. 川鍋陽

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59. 土屋裕子

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YONEZAWA Yasushige 米澤 康滋

米澤 康滋 ヨネザワ ヤスシゲ

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A Simulation Study on the Mechanism of Membrane Voltage Depended Protein VSOPPrincipal Investigator

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計算科学と情報科学によるCTD及びCTRの構造空間と転写因子認識機構の研究Principal Investigator

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計算科学シミュレーションによるＣＴＤの構造特性から探る転写調節機構Principal Investigator

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A hybrid extended ensemble simulation study on the folding process of proteinsPrincipal Investigator

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YONEZAWA Yasushige 米澤康滋

米澤康滋ヨネザワヤスシゲ