Hayashida Morihiro 林田守広

… Alternative Names

HAYASHIDA Morihiro 林田守広

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Researcher Number	40402929
Other IDs
Affiliation (Current)	2025: 松江工業高等専門学校, 電気情報工学科, 教授
Affiliation (based on the past Project Information) *help	2022 – 2024: 松江工業高等専門学校, 電気情報工学科, 教授 2017 – 2021: 松江工業高等専門学校, 電気情報工学科, 准教授 2017 – 2018: 松江工業高等専門学校, その他部局等, 准教授 2007 – 2016: 京都大学, 化学研究所, 助教 2006: Kyoto University, 化学研究所, Assistant Professor
Review Section/Research Field	Principal Investigator Basic Section 62010:Life, health and medical informatics-related / Bioinformatics/Life informatics / Life / Health / Medical informatics Except Principal Investigator Bioinformatics/Life informatics / Mathematical Sciences in Search of New Cooperation / Foundations of mathematics/Applied mathematics / Intelligent informatics / Intelligent informatics
Keywords	Principal Investigator アルゴリズム / 機械学習 / 中央文字列 / 文法圧縮 / タンパク質ドメイン / 整数線形計画問題 / タンパク質 / 生体生命情報学 / タンパク質RNA相互作用 / 中心文字列 … More / 条件付き確率場 / 情報圧縮 / 整数計画法 / グラフ / 深層学習 / バイオマーカー / タンパク質機能予測 / データ圧縮 / タンパク質相互作用 / コルモゴロフ複雑性 / 畳み込みオートエンコーダ / 条件付き敵対的生成ネットワーク / グラフ畳み込みニューラルネットワーク / 整数線形計画法 / 文字列球面 / レーベンシュタイン距離 / 拡張ハミング距離 / ラプラス様混合モデル / 画像認識 / 三角不等式 / Dicer切断部位 / 局所トポロジー / 宿主病原体相互作用 / 一般化series-parallelグラフ / イジングモデル / ニューラルネットワーク / 畳み込みニューラルネットワーク / EMアルゴリズム / ラプラス様混合確率分布 / 一般化Series-Parallelグラフ / タンパク質二量体予測 / タンパク質相互作用予測 / 正則化 / サポートベクトルマシン / カーネル関数 / SURF / SIFT / タンパク質立体構造 / オンライン学習 / タンパク質相互作用強度 / SIFT特徴量 / タンパク質複合体 / タンパク質RNA複合体 / Morganインデックス / グラフ文法 / 類似度 / 蛋白質 / べき乗則 / 分割型木文法 / 相互情報量 / 識別確率場 / バイオインフォマティクス … More Except Principal Investigator 化学構造 / 特徴ベクトル / カーネル法 / 木構造 / 計算生物学 / バイオインフォマティクス / 統計学 / 確率論 / 文字列 / 生物情報ネットワーク / 構造列挙 / 外平面的グラフ / 立体異性体 / グラフ理論 / ケモインフォマティクス / サポートベクターマシン / グラフアルゴリズム / 計算生物 / 統計 / 確率 / 環境再生 / 予測 / 推定 / 微生物の群集 / 数理生物学 / 確率・統計 / 制御理論 / バイオレメディエーション / 制御 / 統計的推定 / ダイナミクス / DNA 配列の集団 / 文字列の位相半群 / subcellular location prediction / chemical structure / support vector machine / kernel method / Euler string / edit distance / triangle inequality / sequence alignment / 糖鎖 / 最大共通部分点集合 / 位置特異的スコア行列 / フランス / 国際情報交換 / モチーフ抽出 / パターンマッチング / タンパク質細胞内局在部位予測 / アルゴリズム / グラフカーネル / タンパク質配列 / クラスタリング / 平面的グラフ / 細胞内局在部位予測 / サポートベクタマシン / オイラー文字列 / 編集距離 / 三角不等式 / 配列アラインメント / 生物配列 / 機械学習 / グラフ列挙 / ヶモインフォマティクス / 構造比較 / ベンゼン環 / 異性体 / 外平面グラフ / 光学異性体 / 構造活性相関 / タンパク質立体構造 / RNA二次構造 / 動的計画法 / 列挙アルゴリズム Less

Developing protein function prediction methods and their application to biomarker discoveryPrincipal Investigator
- Principal Investigator
  
  林田守広
- Project Period (FY)
  2024 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Matsue National College of Technology
タンパク質立体構造の進化的保存部位の解析と機能予測への応用Principal Investigator
- Principal Investigator
  
  林田守広
- Project Period (FY)
  2019 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Matsue National College of Technology
Probability theory and statistics on a noncommutative topological monoid of strings and their application to bioremediation
- Principal Investigator
  
  Koyano Hitoshi
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Mathematical Sciences in Search of New Cooperation
- Research Institution
  Tokyo Institute of Technology
  Institute of Physical and Chemical Research
Development of protein function prediction methods with global substructures and interaction stochastic modelsPrincipal Investigator
- Principal Investigator
  
  HAYASHIDA Morihiro
- Project Period (FY)
  2016 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Matsue National College of Technology
  Kyoto University
An Approach to Novel Structure Design by Combining Discrete Methods and Statistical Methods
- Principal Investigator
  
  AKUTSU Tatsuya
- Project Period (FY)
  2014 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Intelligent informatics
- Research Institution
  Kyoto University
Statistical theory for string data analysis and its application to computational biochemistry
- Principal Investigator
  
  Hitoshi Koyano
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Foundations of mathematics/Applied mathematics
- Research Institution
  Institute of Physical and Chemical Research
  Kyoto University
Development of protein interaction prediction methods by modeling protein substructuresPrincipal Investigator
- Principal Investigator
  
  Hayashida Morihiro
- Project Period (FY)
  2012 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Kyoto University
An Approach to Novel Structural Design by Combining Discrete Methods and Kernel Methods
- Principal Investigator
  
  AKUTSU Tatsuya
- Project Period (FY)
  2010 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Intelligent informatics
- Research Institution
  Kyoto University
Global extractionand analysis of protein tertiary structure patternsPrincipal Investigator
- Principal Investigator
  
  HAYASHIDA Morihiro
- Project Period (FY)
  2009 – 2012
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Kyoto University
New Methods for Designing Chemical Structures Using Graph Theory and Kernel Methods
- Principal Investigator
  
  AKUTSU Tatsuya
- Project Period (FY)
  2007 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Kyoto University
Pattern Matching Methods for Structured Data in Bioinformatics
- Principal Investigator
  
  AKUTSU Tatsuya
- Project Period (FY)
  2004 – 2006
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Kyoto University

[Journal Article] Volume formula and growth rates of the balls of strings under the edit distances2023
- Author(s)
  Koyano Hitoshi、Hayashida Morihiro
- Journal Title
  
  Applied Mathematics and Computation
  
  Volume: 458 Pages: 128202-128202
- DOI
  10.1016/j.amc.2023.128202
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19K12228, KAKENHI-PROJECT-23K20374
[Journal Article] Computational prediction and interpretation of both general and specific types of promoters in Escherichia coli by exploiting a stacked ensemble-learning framework2020
- Author(s)
  Li Fuyi、Chen Jinxiang、Ge Zongyuan、Wen Ya、Yue Yanwei、Hayashida Morihiro、Baggag Abdelkader、Bensmail Halima、Song Jiangning
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 22 Issue: 2 Pages: 2126-2140
- DOI
  10.1093/bib/bbaa049
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K12228
[Journal Article] Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles2019
- Author(s)
  Teppei Matsubara, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu and Jose C. Nacher
- Journal Title
  
  Journal of Bioinformatics and Computational Biology
  
  Volume: 17 Issue: 03 Pages: 1940007-1940007
- DOI
  10.1142/s0219720019400079
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18K11535, KAKENHI-PROJECT-18H04113, KAKENHI-PROJECT-15K01200, KAKENHI-PROJECT-16K00392
[Journal Article] Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings2019
- Author(s)
  Koyano Hitoshi、Hayashida Morihiro、Akutsu Tatsuya
- Journal Title
  
  Journal of Computer and System Sciences
  
  Volume: 106 Pages: 94-128
- DOI
  10.1016/j.jcss.2019.07.003
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K00392
[Journal Article] Euler string-based compression of tree-structured data and its application to analysis of RNAs2018
- Author(s)
  L. Liu, T. Mori, Y. Zhao, M. Hayashida and T. Akutsu
- Journal Title
  
  Current Bioinformatics
  
  Volume: 13 Issue: 1 Pages: 25-33
- DOI
  10.2174/1574893611666160608102231
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26240034, KAKENHI-PROJECT-16KT0020
[Journal Article] Euler string-based compression of tree-structured data and its application to analysis of RNAs2018
- Author(s)
  Liu, L., Mori, T., Zhao, Y., Hayashida, M., and Akutsu., T.
- Journal Title
  
  Current Bioinformatics
  
  Volume: 13 Pages: 25-33
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Journal Article] Improving conditional random field model for prediction of protein-RNA residue-base contacts2018
- Author(s)
  Morihiro Hayashida, Noriyuki Okada, Mayumi Kamada, Hitoshi Koyano
- Journal Title
  
  Quantitative Biology
  
  Volume: 6 Issue: 2 Pages: 155-162
- DOI
  10.1007/s40484-018-0136-7
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K00392
[Journal Article] Improving prediction of heterodimeric protein complexes using combination with pairwise kernel2018
- Author(s)
  Ruan Peiying、Hayashida Morihiro、Akutsu Tatsuya、Vert Jean-Philippe
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 19 Issue: S1 Pages: 39-39
- DOI
  10.1186/s12859-018-2017-5
- NAID
  120006537092
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00392, KAKENHI-PROJECT-26240034, KAKENHI-PROJECT-16KT0020
[Journal Article] Bastion6: a bioinformatics approach for accurate prediction of type VI secreted effectors2018
- Author(s)
  Wang, J., Yang, B., Leier, A., Marquez-Lago, T. T., Hayashida, M., Rocker, A., Zhang, Y., Akutsu, T., Chou, K.-C., Strugnell, R. A., Song, J., and Lithgow, T.
- Journal Title
  
  Bioinformatics
  
  Volume: 34(15) Issue: 15 Pages: 2546-2555
- DOI
  10.1093/bioinformatics/bty155
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Journal Article] ncRNA-disease association prediction based on sequence information and tripartite network2018
- Author(s)
  T. Mori, H. Ngouv, M. Hayashida, T. Akutsu and J. C. Nacher
- Journal Title
  
  BMC Systems Biology
  
  Volume: 12 Issue: S1 Pages: 1-1
- DOI
  10.1186/s12918-018-0527-4
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25330351, KAKENHI-PROJECT-16K00392, KAKENHI-PROJECT-16KT0020
[Journal Article] Analysis of critical and redundant vertices in controlling directed complex networks using feedback vertex sets2018
- Author(s)
  Yu Bao, Morihiro Hayashida, Pengyu Liu, Masayuki Ishitsuka, Jose Nacher, Tatsuya Akutsu
- Journal Title
  
  Journal of Computational Biology
  
  Volume: 25 Issue: 10 Pages: 1071-1090
- DOI
  10.1089/cmb.2018.0019
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00392, KAKENHI-PROJECT-16KT0020
[Journal Article] Improving conditional random field model for prediction of protein-RNA residue-base contacts2018
- Author(s)
  Hayashida, M., Okada, N., Kamada, M., and Koyano, H.
- Journal Title
  
  Quantitative Biology
  
  Volume: 6(2) Pages: 155-162
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16KT0020
[Journal Article] Improving conditional random field model for prediction of protein-RNA Residue-base contacts2018
- Author(s)
  Hayashida, M., Kamada, M., and Koyano, H.
- Journal Title
  
  Quantitative Biology
  
  Volume: 印刷中
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16KT0020
[Journal Article] Determining the minimum number of protein-protein interactions required to support known protein complexes2018
- Author(s)
  Natsu Nakajima, Morihiro Hayashida, Jesper Jansson, Osamu Maruyama, Tatsuya Akutsu
- Journal Title
  
  PLOS ONE
  
  Volume: 13 Issue: 4 Pages: e0195545-e0195545
- DOI
  10.1371/journal.pone.0195545
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00392, KAKENHI-PROJECT-17K00407, KAKENHI-PROJECT-18H04113, KAKENHI-PROJECT-16KT0020
[Journal Article] Finding median and center strings for a probability distribution on a set of strings under Levenshtein distance based on integer linear programming2017
- Author(s)
  Hayashida, M. and Koyano, H.
- Journal Title
  
  Communications in Computer and Information Science
  
  Volume: 690 Pages: 108-121
- DOI
  10.1007/978-3-319-54717-6_7
- ISBN
  9783319547169, 9783319547176
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26610037, KAKENHI-PROJECT-16K00392
[Journal Article] SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems2017
- Author(s)
  Y. An, J. Wang, J. Song, C. Li, J. Revote, T. Naderer, M. Hayashida, T. Akutsu, Y. Zhang, G. I. Webb, T. Lithgow
- Journal Title
  
  Scientific Reports
  
  Volume: 7 Issue: 1 Pages: 41031-41031
- DOI
  10.1038/srep41031
- NAID
  120005997781
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26240034, KAKENHI-PROJECT-16KT0020
[Journal Article] Online regression algorithm with nonlinear transformation and its application to prediction of protein-protein interaction strengths2017
- Author(s)
  Hayashida, M., Kamada, M., and Koyano, H.
- Journal Title
  
  IPSJ SIG Technical Report
  
  Volume: 2017-MPS-114 Pages: 1-4
- Data Source
  KAKENHI-PROJECT-16KT0020
[Journal Article] SecretEPDB: A comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems2017
- Author(s)
  An, Y., Wang, J., Li, C., Revote, J., Zhang, Y., Naderer, T., Hayashida, M., Akutsu, T., Webb, G., Lithgow, T., Song, J.
- Journal Title
  
  Scientific Reports
  
  Volume: 7 Pages: 41031-41031
- NAID
  120005997781
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Journal Article] Finding median and center strings for a probability distribution on a set of strings under Levenshtein distance based on integer linear programming2017
- Author(s)
  Hayashida, M. and Koyano, H.
- Journal Title
  
  Communications in Computer and Information Science
  
  Volume: 690 Pages: 108-121
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16KT0020
[Journal Article] Critical evaluation of in silico methods for prediction of coiled-coil regions in proteins2016
- Author(s)
  Li, C., Chang, C. C. H., Porebski, B. T., Hayashida, M., Akutsu, T., Song, J., and Buckle, A. M.
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 17 Issue: 2 Pages: 270-282
- DOI
  10.1093/bib/bbv047
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Journal Article] Integer linear programming approach to center and median strings for a probability distribution on a set of strings2016
- Author(s)
  Koyano, H. and Hayashida, M
- Journal Title
  
  Communications in Computer and Information Science
  
  Volume: 未定
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26610037
[Journal Article] Enumeration method for structural isomers containing user-defined structures based on breadth-first search approach2016
- Author(s)
  J. Jindalertudomdee, M. Hayashida, T. Akutsu
- Journal Title
  
  Journal of Computational Biology
  
  Volume: 23 Issue: 8 Pages: 625-640
- DOI
  10.1089/cmb.2016.0056
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26240034, KAKENHI-PROJECT-16KT0020
[Journal Article] LBSizeCleav: improved support vector machine (SVM)-based prediction of Dicer cleavage sites using loop/bulge length2016
- Author(s)
  Y. Bao, M. Hayashida, T. Akutsu
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 17 Issue: 1 Pages: 487-487
- DOI
  10.1186/s12859-016-1353-6
- NAID
  120005973378
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26240034, KAKENHI-PROJECT-16KT0020, KAKENHI-PROJECT-16K00392
[Journal Article] Complex network-based approaches to biomarker discovery2016
- Author(s)
  M. Hayashida, T. Akutsu
- Journal Title
  
  Biomarkers in Medicine
  
  Volume: 10 Pages: 621-632
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26240034
[Journal Article] Improving accuracy for predicting heterodimeric protein complexes using combination kernels2016
- Author(s)
  Ruan, P., Hayashida, M., Akutsu, T., and Vert, J.-P.
- Journal Title
  
  IPSJ SIG Technical Report
  
  Volume: 2016-MPS-108 Pages: 12-12
- Data Source
  KAKENHI-PROJECT-16KT0020
[Journal Article] Integer linear programming approach to median and center strings for a probability distribution on a set of strings2016
- Author(s)
  Hayashida, M. and Koyano, H.
- Journal Title
  
  Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies
  
  Volume: 3 Pages: 35-41
- DOI
  10.5220/0005666400350041
- NAID
  120005947093
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26610037, KAKENHI-PROJECT-16KT0020
[Journal Article] Grammar-based compression for unrooted trees and subclass of plane graphs using integer linear programming2016
- Author(s)
  Hayashida, M., Cao, Y., and Zhao, Y.
- Journal Title
  
  IPSJ SIG Technical Report
  
  Volume: 2016-MPS-108 Pages: 11-11
- Data Source
  KAKENHI-PROJECT-16KT0020
[Journal Article] Maximum margin classifier working in a set of strings2016
- Author(s)
  H. Koyano, M. Hayashida, T. Akutsu
- Journal Title
  
  Proceedings of the Royal Society A
  
  Volume: 472 Issue: 2187 Pages: 20150551-20150551
- DOI
  10.1098/rspa.2015.0551
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26240034, KAKENHI-PROJECT-26610037, KAKENHI-PROJECT-16KT0020
[Journal Article] Enumeration method for tree-like chemical compounds with benzene rings and naphthalene rings by breadth-first search order2016
- Author(s)
  J. Jindalertudomdee, M. Hayashida, Y. Zhao, T. Akutsu
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 17 Issue: 1 Pages: 113-113
- DOI
  10.1186/s12859-016-0962-4
- NAID
  120005822781
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26240034, KAKENHI-PROJECT-24500361, KAKENHI-PROJECT-16KT0020
[Journal Article] Complex network-based approaches to biomarker discovery2016
- Author(s)
  Hayashida, M. and Akutsu, T.
- Journal Title
  
  Biomarkers in Medicine
  
  Volume: 10 Issue: 6 Pages: 621-632
- DOI
  10.2217/bmm-2015-0047
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16KT0020, KAKENHI-PROJECT-26540125
[Journal Article] 文字列の集合上の確率分布における中央文字列および中心文字列に対する整数計画問題2016
- Author(s)
  林田守広、小谷野仁
- Journal Title
  
  IPSJ SIG Technical Report
  
  Volume: 2016-MPS-108 Pages: 7-7
- Data Source
  KAKENHI-PROJECT-16KT0020
[Journal Article] Host-pathogen protein interaction prediction based on local topology structures of a protein interaction network2016
- Author(s)
  J. Jindalertudomdee, M. Hayashida, J. Song, T. Akutsu
- Journal Title
  
  Proc. IEEE 16th International Conference on Bioinformatics and Bioengineering
  
  Volume: - Pages: 7-12
- DOI
  10.1109/bibe.2016.26
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26240034
[Journal Article] Grammar-based compression approach to extraction of common rules among multiple trees of glycans and RNAs2015
- Author(s)
  Y. Zhao, M. Hayashida, Y. Cao, J. Hwang, T. Akutsu
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 16 Issue: 1 Pages: 128-128
- DOI
  10.1186/s12859-015-0558-4
- NAID
  120005749951
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26240034, KAKENHI-PROJECT-24500361
[Journal Article] Parallelization of enumerating tree-like chemical compounds by breadth-first search order2015
- Author(s)
  M. Hayashida, J. Jindalertudomdee, Y. Zhao, T. Akutsu
- Journal Title
  
  BMC Medical Genomics
  
  Volume: 8 (Suppl 2) Issue: S2
- DOI
  10.1186/1755-8794-8-s2-s15
- NAID
  120005947140
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26240034, KAKENHI-PROJECT-24500361
[Journal Article] Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels2014
- Author(s)
  Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 15
- NAID
  120005372925
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240009
[Journal Article] Measuring the similarity of protein structures using image local feature descriptors SIFT and SURF2014
- Author(s)
  Hayashida, M., Koyano, H., and Akutsu, T.
- Journal Title
  
  2014 8th International Conference on Systems Biology (ISB)
  
  Volume: - Pages: 167-171
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26610037
[Journal Article] Proteome Compression via Protein Domain Compositions2014
- Author(s)
  Hayashida, M., Ruan, P., Akutsu, T.
- Journal Title
  
  Methods
  
  Volume: 67 Issue: 3 Pages: 380-385
- DOI
  10.1016/j.ymeth.2014.01.012
- NAID
  120005466444
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-24500361, KAKENHI-PROJECT-26240034
[Journal Article] Prediction of Protein-protein Interaction Strength Using Domain Features with Supervised Regression2014
- Author(s)
  Kamada, M., Sakuma, Y., Hayashida, M., Akutsu, T.
- Journal Title
  
  The Scientific World Journal
  
  Volume: 2014 Pages: 240673-240673
- DOI
  10.1155/2014/240673
- NAID
  120005462601
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-24500361, KAKENHI-PROJECT-26240034
[Journal Article] Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso2013
- Author(s)
  Morihiro Hayashida, Mayumi Kamada, Jiangning Song, Tatsuya Akutsu
- Journal Title
  
  BMC Systems Biology
  
  Volume: 7
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240009
[Journal Article] Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels2013
- Author(s)
  Ruan, P., Hayashida, M., Maruyama, O., Akutsu, T.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 15 Issue: S2
- DOI
  10.1186/1471-2105-15-s2-s6
- NAID
  120005372925
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24500361
[Journal Article] Survival analysis by penalized regression and matrix factorization2013
- Author(s)
  Yeuntyng Lai, Morihiro Hayashida, Tatsuya Akutsu
- Journal Title
  
  The Scientific World Journal
  
  Volume: 2013 Issue: 1 Pages: 632030-632030
- DOI
  10.1155/2013/632030
- NAID
  120005289846
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24500361
[Journal Article] Prediction of heterodimeric protein complexes from weighted protein-protein interaction networks using novel features and kernel functions2013
- Author(s)
  Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu
- Journal Title
  
  PLoS ONE
  
  Volume: 8 Issue: 6 Pages: e65265-e65265
- DOI
  10.1371/journal.pone.0065265
- NAID
  120005296009
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240009, KAKENHI-PROJECT-24500361
[Journal Article] Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso2013
- Author(s)
  Hayashida, M., Kamada, M., Song, J., Akutsu, T.
- Journal Title
  
  BMC Systems Biology
  
  Volume: 7 Issue: Suppl 2 Pages: S15-S15
- DOI
  10.1186/1752-0509-7-s2-s15
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24500361
[Journal Article] Breadth-first search approach to enumeration of tree-like chemical compounds2013
- Author(s)
  Y. Zhao, M. Hayashida, J. Jindalertudomdee, H. Nagamochi and T. Akutsu
- Journal Title
  
  Journal of Bioinformatics and Computational Biology
  
  Volume: 11 Issue: 06 Pages: 1143007-1143007
- DOI
  10.1142/s0219720013430075
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-13J02920, KAKENHI-PROJECT-22240009
[Journal Article] Protein complex prediction via improved verification methods using constrained domain-domain matching2012
- Author(s)
  Zhao, Y., Hayashida, M., Nacher, J. C., Nagamochi, H. and Akutsu, T
- Journal Title
  
  International Journal of Bioinformatics Research and Applications
  
  Volume: vol. 8 Issue: 3/4 Pages: 210-227
- DOI
  10.1504/ijbra.2012.048970
- NAID
  120005243442
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21700323, KAKENHI-PROJECT-22240009
[Journal Article] A quadsection algorithm for grammar-based image compression2012
- Author(s)
  Hayashida, M., Ruan, P. and Akutsu, T.
- Journal Title
  
  Integrated Computer-Aided Engineering
  
  Volume: vol. 19 Issue: 1 Pages: 23-38
- DOI
  10.3233/ica-2012-0389
- NAID
  110007993903
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21700323
[Journal Article] Measuring the similarity of protein structures using image compression algorithms2011
- Author(s)
  林田守広, 阿久津達也
- Journal Title
  
  IEICE Transactions on Information and Systems
  
  Volume: E94-D Pages: 2468-2478
- NAID
  10030538198
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21700323
[Journal Article] Conditional random field approach to prediction of protein-protein interactions using domain information2011
- Author(s)
  Hayashida, M., Kamada, M., Song, J. and Akutsu, T
- Journal Title
  
  BMC Systems Biology
  
  Volume: vol. 5, Suppl. 1 Issue: Suppl 1 Pages: S8-S8
- DOI
  10.1186/1752-0509-5-s1-s8
- NAID
  120003238942
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21700323, KAKENHI-PROJECT-22240009
[Journal Article] Measuring the similarity of protein structures using image compression algorithms2011
- Author(s)
  Hayashida, M. and Akutsu, T
- Journal Title
  
  IEICE Transactions on Information and Systems
  
  Volume: vol. E94-D, no. 12 Pages: 2468-2478
- NAID
  10030538198
- URL
  http://search.ieice.org/bin/summary.php?id=e94-d_12_2468
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21700323
[Journal Article] Comparing biological networks via graph compression2010
- Author(s)
  Hayashida, M. and Akutsu, T
- Journal Title
  
  BMC Systems Biology
  
  Volume: vol. 4, Suppl. 2 Issue: S2
- DOI
  10.1186/1752-0509-4-s2-s13
- NAID
  120002561281
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21700323
[Journal Article] The role of internal duplication in the evolution of multi-domain proteins2010
- Author(s)
  Nacher, J. C., Hayashida, M.and Akutsu, T
- Journal Title
  
  BioSystems
  
  Volume: vol. 101, no. 2 Issue: 2 Pages: 127-135
- DOI
  10.1016/j.biosystems.2010.05.005
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21700323
[Journal Article] Comparing biological networks via graph compression2010
- Author(s)
  林田守広, 阿久津達也
- Journal Title
  
  BMC Systems Biology
  
  Volume: 4
- NAID
  120002561281
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21700323
[Journal Article] The role of internal duplication in the evolution of multi-domain proteins2010
- Author(s)
  ナチェルホセ, 林田守広, 阿久津達也
- Journal Title
  
  Biosystems
  
  Volume: 101 Pages: 127-135
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21700323
[Journal Article] Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures2010
- Author(s)
  趙楊, 林田守広, 阿久津達也
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 11
- NAID
  120002723148
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21700323
[Journal Article] Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures2010
- Author(s)
  Y.Zhao, M.Hayashida, T.Akutsu
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 11(Suppl.11)
- NAID
  120002723148
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240009
[Journal Article] Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures2010
- Author(s)
  Zhao, Y., Hayashida, M.and Akutsu, T
- Journal Title
  
  BMC Bioinformatics
  
  Volume: vol. 11, Suppl 11 Issue: S11
- DOI
  10.1186/1471-2105-11-s11-s4
- NAID
  120002723148
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21700323
[Journal Article] Comparing biological networks via graph compression2010
- Author(s)
  M.Hayashida, T.Akutsu
- Journal Title
  
  BMC Systems Biology
  
  Volume: 4(Suppl.2)
- NAID
  120002561281
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240009
[Journal Article] A clustering method for analysis of sequence similarity networks of proteins using maximal components of graphs2008
- Author(s)
  M. Hayashida, T. Akutsu and H. Nagamochi
- Journal Title
  
  IPSJ Transactions on Bioinformatics 49-Sig5
  
  Pages: 15-24
- NAID
  110006684906
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19200022
[Journal Article] A clustering method for analysis of sequence similarity networks of proteins using maximal components of graphs2008
- Author(s)
  M.Hayashida, T.Akutsu, H.Nagamochi
- Journal Title
  
  IPSJ Transactions on Bioinformatics 49-Sig 5
  
  Pages: 15-24
- NAID
  110006684906
- Data Source
  KAKENHI-PROJECT-19200022
[Journal Article] A novel clustering method for analysis of biological networks using maximal components of graphs2007
- Author(s)
  M.Hayashida, T.Akutsu, H.Nagamochi
- Journal Title
  
  Proc. 5th Asia Pasific Bioinformatics Conference
  
  Pages: 257-266
- NAID
  110004823195
- Data Source
  KAKENHI-PROJECT-16300092
[Journal Article] A novel clustering method for analysis of biological networks using maximal components of graphs2007
- Author(s)
  M. Hayashida, T. Akutsu, H. Nagamochi
- Journal Title
  
  Proc. 5th Asia-Pacific Bioinformatics Conference(APBC 2007)
  
  Pages: 257-266
- NAID
  110004823195
- Description
  「研究成果報告書概要(和文)」より
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16300092
[Journal Article] A novel clustering method for analysis of biological networks using maximal components of graphs2007
- Author(s)
  M., Hayashida, T., Akutsu, H., Nagamochi
- Journal Title
  
  Proc. 5th Asia-Pacific Bioinformatics Conference (APBC 2007)
  
  Pages: 257-266
- NAID
  110004823195
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-16300092
[Presentation] 敵対的生成ネットワークとグラフ畳み込みニューラルネットワークを用いた遺伝子発現データからの肺がん予測2023
- Author(s)
  川上瞬汰, 林田守広, 藤嶋教彰, ナチェルホセ
- Organizer
  情報処理学会第142回数理モデル化と問題解決研究会
- Data Source
  KAKENHI-PROJECT-19K12228
[Presentation] 整数線形計画法による文字列の集合上の確率分布における中心文字列探索の高速化の一検討2023
- Author(s)
  槇原このか, 林田守広, 小谷野仁, 村上享, 桑野淳一郎
- Organizer
  情報処理学会第142回数理モデル化と問題解決研究会
- Data Source
  KAKENHI-PROJECT-19K12228
[Presentation] 畳み込みオートエンコーダを用いたタンパク質構造モチーフ探索の一検討2022
- Author(s)
  大塚竜星, 林田守広
- Organizer
  情報処理学会第84回全国大会
- Data Source
  KAKENHI-PROJECT-19K12228
[Presentation] 整数線形計画法による文字列の集合上の確率分布における中央文字列探索の高速化2022
- Author(s)
  槇原このか, 林田守広, 小谷野仁
- Organizer
  情報処理学会第84回全国大会
- Data Source
  KAKENHI-PROJECT-19K12228
[Presentation] Laplace 様混合モデルの基準化定数の計算2021
- Author(s)
  小谷野仁, 林田守広
- Organizer
  情報処理学会第132回数理モデル化と問題解決研究会
- Data Source
  KAKENHI-PROJECT-19K12228
[Presentation] Measuring the Similarity of Proteomes using Grammar-based Compression via Domain Combinations2020
- Author(s)
  Hayashida Morihiro、Koyano Hitoshi、Nacher Jose
- Organizer
  13th International Joint Conference on Biomedical Engineering Systems and Technologies
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K12228
[Presentation] 一般化Series-Parallelグラフの文法圧縮と時間計算量の実験的解析2020
- Author(s)
  小村亘平, 林田守広, 小谷野仁, 阿久津達也
- Organizer
  情報処理学会第127回数理モデル化と問題解決研究会
- Data Source
  KAKENHI-PROJECT-19K12228
[Presentation] Artificial neural network approach to prediction of protein--RNA residue-base contacts2019
- Author(s)
  Hayashida, M. and Koyano, H.
- Organizer
  The 12th International Joint Conference on Biomedical Engineering Systems and Technologies
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] Artificial neural network approach to prediction of protein-RNA residue-base contacts2019
- Author(s)
  Morihiro Hayashida, Jose Nacher, Hitoshi Koyano
- Organizer
  The 12th International Conference on Bioinformatics Models, Methods and Algorithms
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00392
[Presentation] ncRNA-disease association prediction based on sequence information and tripartite network2018
- Author(s)
  Mori, T., Ngouv, H., Hayashida, M., Akutsu, T., and Nacher, J.
- Organizer
  16th Asia Pacific Bioinformatics Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] Grammar-based compression for directed and undirected generalized series-parallel graphs using integer linear programming2018
- Author(s)
  M. Hayashida, H. Koyano, T. Akutsu:
- Organizer
  The 11th International Joint Conference on Biomedical Engineering Systems and Technologies
- Data Source
  KAKENHI-PROJECT-26240034
[Presentation] Analyzing order of domains in grammar-based compression of proteomes2018
- Author(s)
  Hayashida, M., Ishibashi, K., and Koyano, H.
- Organizer
  The 24th International Conference on Parallel and Distributed Processing Techniques and Applications
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] Grammar-based compression for directed and undirected generalized series-parallel graphs using integer linear programming2018
- Author(s)
  Hayashida, M., Koyano, H., and Akutsu, T.
- Organizer
  The 9th International Conference on Bioinformatics Models, Methods and Algorithms
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] Analyzing order of domains in grammar-based compression of proteomes2018
- Author(s)
  Morihiro Hayashida, Kousei Ishibashi, Hitoshi Koyano
- Organizer
  The 24th International Conference on Parallel and Distributed Processing Techniques and Applications
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00392
[Presentation] ncRNA-disease association prediction based on sequence information and tripartite network2018
- Author(s)
  Takuya Mori, Hayliang Ngouv, Morihiro Hayashida, Tatsuya Akutsu, Jose Nacher
- Organizer
  The 16th Asia Pacific Bioinformatics Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00392
[Presentation] Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles2018
- Author(s)
  Teppei Matsubara, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu, Jose Nacher
- Organizer
  The 18th IEEE International Conference on Bioinformatics and BioEngineering
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00392
[Presentation] ncRNA-disease association prediction based on sequence information and tripartite network2018
- Author(s)
  T. Mori, H. Ngouv, M. Hayashida, T. Akutsu and J. Nacher
- Organizer
  The Sixteenth Asia Pacific Bioinformatics Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26240034
[Presentation] Grammar-based compression for directed and undirected generalized series-parallel graphs using integer linear programming2018
- Author(s)
  Morihiro Hayashida, Hitoshi Koyano, Tatsuya Akutsu
- Organizer
  The 9th International Conference on Bioinformatics Models, Methods and Algorithms
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00392
[Presentation] Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles2018
- Author(s)
  Matsubara, T., Ochiai, T., Hayashida, M., Akutsu, T., and Nacher, J.
- Organizer
  The 18th IEEE International Conference on Bioinformatics and BioEngineering
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] Improving prediction of heterodimeric protein complexes using combination with pairwise kernel2018
- Author(s)
  Ruan, P., Hayashida, M., Akutsu, T., and Vert, J.-P.
- Organizer
  28th International Conference on Genome Informatics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] ncRNA-disease association prediction based on sequence information and tripartite network2018
- Author(s)
  Mori, T., Ngouv, H., Hayashida, M., Akutsu, T., Nacher, J.
- Organizer
  The 16th Asia Pacific Bioinformatics Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] Grammar-based compression for directed and undirected generalized series-parallel graphs using integer linear programming2018
- Author(s)
  Hayashida, M., Koyano, H., and Akutsu, T.
- Organizer
  9th International Conference on Bioinformatics Models, Methods and Algorithms
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] Optimal string clustering based on a statistical theory on a topological monoid of strings2017
- Author(s)
  Koyano, H., Hayashida, M., and Akutsu, T.
- Organizer
  13th Workshop on Stochastic Models, Statistics and Their Applications
- Place of Presentation
  Berlin, Germany
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] Optimal string clustering based on a statistical theory on a topological monoid of strings2017
- Author(s)
  Koyano, H., Hayashida, M., and Akutsu, T.
- Organizer
  13th Workshop on Stochastic Models, Statistics and Their Applications
- Place of Presentation
  Berlin, Germany
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26610037
[Presentation] Predicting strengths of protein-protein interactions through online regression algorithms2017
- Author(s)
  Hayashida, M., Kamada, M., and Koyano, H.
- Organizer
  2017 International Conference on Parallel and Distributed Processing Techniques and Applications
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] Improving conditional random field model for prediction of protein-RNA Residue-base contacts2017
- Author(s)
  Hayashida, M., Okada, M., Kamada, M., and Koyano, H.
- Organizer
  11th International Conference on Computational Systems Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] The 28th International Conference on Genome Informatics2017
- Author(s)
  P. Ruan, M. Hayashida, T. Akutsu and J-P. Vert
- Organizer
  Improving prediction of heterodimeric protein complexes using combination with pairwise kernel
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26240034
[Presentation] Optimal string clustering based on a statistical theory on a topological monoid of strings2017
- Author(s)
  Koyano, H., Hayashida, M., and Akutsu, T.
- Organizer
  2017 13th Workshop on Stochastic Models, Statistics and Their Applications
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] Improving conditional random field model for prediction of protein-RNA residue-base contacts2017
- Author(s)
  Morihiro Hayashida, Noriyuki Okada, Mayumi Kamada, Hitoshi Koyano
- Organizer
  The 11th International Conference on Computational Systems Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00392
[Presentation] Host-pathogen protein interaction prediction based on local topology structures of a protein interaction network2016
- Author(s)
  Jindalertudomdee, J., Hayashida, M., Song, J., and Akutsu. T.
- Organizer
  IEEE 16th International Conference on Bioinformatics and BioEngineering
- Place of Presentation
  Taichung, Taiwan
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] Host-pathogen protein interaction prediction based on local topology structures of a protein interaction network2016
- Author(s)
  Jira Jindalertudomdee, Morihiro Hayashida, Jianning Song, Tatsuya Akutsu
- Organizer
  IEEE 16th International Conference on Bioinformatics and BioEngineering
- Place of Presentation
  台中
- Year and Date
  2016-10-31
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00392
[Presentation] Host-pathogen protein interaction prediction based on local topology structures of a protein interaction network2016
- Author(s)
  J. Jindalertudomdee, M. Hayashida, J. Song, T. Akutsu
- Organizer
  IEEE 16th International Conference on Bioinformatics and Bioengineering
- Place of Presentation
  台湾・台中・Sprendor Hotel
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26240034
[Presentation] Integer linear programming approach to median and center strings for a probability distribution on a set of strings2016
- Author(s)
  Hayashida M. and Koyano, H.
- Organizer
  15th European Conference on Computational Biology
- Place of Presentation
  The Hague, Netherlands
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16KT0020
[Presentation] 文字列の集合上の確率分布における中央文字列および中心文字列に対する整数計画問題2016
- Author(s)
  林田守広, 小谷野仁
- Organizer
  日本情報処理学会「数理モデル化と問題解決研究会」, 「バイオ情報学研究会」及び日本電子情報通信学会「ニューロコンピューティング研究会」, 「情報論的学習理論と機械学習研究会」合同研究会
- Place of Presentation
  沖縄、日本
- Data Source
  KAKENHI-PROJECT-26610037
[Presentation] Integer linear programming approach to median and center strings for a probability distribution on a set of strings2016
- Author(s)
  Hayashida, M., Koyano, H.
- Organizer
  The 7th International Conference on Bioinformatics Models, Methods and Algorithms
- Place of Presentation
  Rome, Italy
- Year and Date
  2016-02-21
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-24500361
[Presentation] Integer linear programming approach to center and median strings for a probability distribution on a set of strings2016
- Author(s)
  林田守広
- Organizer
  7th International Conference on Bioinformatics Models, Methods, and Algorithms
- Place of Presentation
  Rome, Italy
- Year and Date
  2016-02-21
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26610037
[Presentation] Online learning approach to prediction of protein-protein interaction strengths2015
- Author(s)
  Hayashida, M., Kamada, M., Koyano, H.
- Organizer
  The 9th International Conference on Systems Biology
- Place of Presentation
  Luoyang, China
- Year and Date
  2015-08-21
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-24500361
[Presentation] Prediction of ncRNA-disease association based on sequence expression and tripartite network2015
- Author(s)
  H. Ngouv, M. Hayashida, J.C. Nacher, T. Akutsu
- Organizer
  生命医薬情報学連合大会2015年大会
- Place of Presentation
  京都大学宇治キャンパス
- Year and Date
  2015-10-29
- Data Source
  KAKENHI-PROJECT-26240034
[Presentation] Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels2014
- Author(s)
  Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu
- Organizer
  The 20th Asia Pacific Bioinformatics Conference
- Place of Presentation
  Fudan University, Shanghai, China
- Data Source
  KAKENHI-PROJECT-22240009
[Presentation] Breadth first search approach to enumeration of tree-like chemical compounds2013
- Author(s)
  Yang Zhao, Morihiro Hayashida, Jira Jindalertudomdee, Hiroshi Nagamochi, Tatsuya Akutsu
- Organizer
  The 24th International Conference on Genome Informatics
- Place of Presentation
  Matrix, Biopolis, Singapore
- Data Source
  KAKENHI-PROJECT-22240009
[Presentation] ベンゼン環を持つ木状化学構造の幅優先探索による列挙手法2013
- Author(s)
  Jira Jindalertudomdee, 林田守広, 阿久津達也
- Organizer
  第３６回情報化学討論会
- Place of Presentation
  筑波大学
- Data Source
  KAKENHI-PROJECT-22240009
[Presentation] Predicting protein-RNA residue-base contacts using two-dimensional conditional random field2012
- Author(s)
  Morihiro Hayashida, Mayumi Kamada, Jiangning Song, Tatsuya Akutsu
- Organizer
  2012 IEEE Conference on Systems Biology
- Place of Presentation
  Xi'an, China
- Data Source
  KAKENHI-PROJECT-24500361
[Presentation] Protein complex prediction via improved verification methods using constrained domain-domain matching2012
- Author(s)
  Y.Zhao, M.Hayashida, J.Nacher
- Organizer
  The Tenth Asia Pacific Bioinformatics Conference
- Place of Presentation
  Rydges Melbourne, Australia
- Year and Date
  2012-01-19
- Data Source
  KAKENHI-PROJECT-22240009
[Presentation] Protein complex prediction via improved verification methods using constrained domain-domain matching2012
- Author(s)
  趙楊, 林田守広, ナチェルホセ, 永持仁, 阿久津達也
- Organizer
  The 10th Asia-Pacific Bioinformatics Conference
- Place of Presentation
  オーストラリア,メルボルン市
- Year and Date
  2012-01-19
- Data Source
  KAKENHI-PROJECT-21700323
[Presentation] Protein complex prediction via improved verification methods using constrained domain-domain matching2012
- Author(s)
  Zhao, Y., Hayashida, M., Nacher, J., Nagamochi, H. and Akutsu, T.
- Organizer
  The 10th Asia-Pacific Bioinformatics Conference
- Place of Presentation
  メルボルン,オーストラリア
- Year and Date
  2012-01-19
- Data Source
  KAKENHI-PROJECT-21700323
[Presentation] Discriminative random field approach to prediction of protein residue contacts2011
- Author(s)
  Kamada, M., Hayashida, M., Song, J. and Akutsu, T.
- Organizer
  2011 IEEE Conference on Systems Biology
- Place of Presentation
  珠海,中国
- Year and Date
  2011-09-03
- Data Source
  KAKENHI-PROJECT-21700323
[Presentation] Discriminative random field approach to prediction of protein residue contacts2011
- Author(s)
  鎌田真由美, 林田守広, 宋江寧, 阿久津達也
- Organizer
  2011 IEEE Conference on Systems Biology
- Place of Presentation
  中国,珠海市
- Year and Date
  2011-09-03
- Data Source
  KAKENHI-PROJECT-21700323
[Presentation] Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures2010
- Author(s)
  Zhao, Y., Hayashida, M.and Akutsu, T
- Organizer
  The 21st International Conference on Genome Informatics
- Place of Presentation
  杭州,中国
- Year and Date
  2010-12-16
- Data Source
  KAKENHI-PROJECT-21700323
[Presentation] Conditional random field approach to prediction of protein-protein interactions using mutual information between domains2010
- Author(s)
  Hayashida, M., Kamada, M., Song, J. and Akutsu, T
- Organizer
  The Fourth International Conference on Computational Systems Biology
- Place of Presentation
  蘇州,中国
- Year and Date
  2010-09-09
- Data Source
  KAKENHI-PROJECT-21700323
[Presentation] Conditional random field approach to prediction of protein-protein interactions using mutual information between domains2010
- Author(s)
  林田守広, 鎌田真由美, 宋江寧, 阿久津達也
- Organizer
  The Fourth International Conference on Computational Systems Biology
- Place of Presentation
  中国,蘇州市
- Year and Date
  2010-09-09
- Data Source
  KAKENHI-PROJECT-21700323
[Presentation] Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycantree structures2010
- Author(s)
  Y.Zhao, M.Hayashida, T.Akutsu
- Organizer
  The 21st International Conference on Genome Informatics
- Place of Presentation
  The First World Hotel, Hangzhou, China
- Year and Date
  2010-12-16
- Data Source
  KAKENHI-PROJECT-22240009
[Presentation] A quadsection algorithm for grammar-based image compression2010
- Author(s)
  Hayashida, M., Ruan, P. and Akutsu, T.
- Organizer
  The 2010 International Conference on Advanced Science and Technology
- Place of Presentation
  宮崎
- Year and Date
  2010-06-25
- Data Source
  KAKENHI-PROJECT-21700323
[Presentation] Comparing biological networks via graph compression2009
- Author(s)
  Hayashida, M. and Akutsu, T
- Organizer
  The Third International Symposium on Optimization and Systems Biology
- Place of Presentation
  張家界,中国
- Year and Date
  2009-09-20
- Data Source
  KAKENHI-PROJECT-21700323
[Presentation] Comparing biological networks via graph compression2009
- Author(s)
  林田守広、阿久津達也
- Organizer
  The Third International Symposium on Optimization and Systems Biology (OSB2009)
- Place of Presentation
  Zhangjiajie, China
- Year and Date
  2009-09-20
- Data Source
  KAKENHI-PROJECT-21700323
[Presentation] Proteome compression via protein domain compositions
- Author(s)
  Hayashida, M., Ruan, P., Akutsu, T.
- Organizer
  2013 IEEE Conference on Systems Biology
- Place of Presentation
  Huangshan, China
- Data Source
  KAKENHI-PROJECT-24500361
[Presentation] Inferring strengths of protein-protein interactions using support vector regression
- Author(s)
  Sakuma, Y., Kamada, M., Hayashida, M., Akutsu, T.
- Organizer
  The 2013 International Conference on Parallel and Distributed Processing Techniques and Applications
- Place of Presentation
  Las Vegas, USA
- Data Source
  KAKENHI-PROJECT-24500361
[Presentation] 文字列の距離空間上の確率論とその機械学習への応用
- Author(s)
  小谷野仁, 林田守広, 阿久津達也
- Organizer
  日本応用数理学会 2014 年度年会
- Place of Presentation
  政策研究大学院大学
- Year and Date
  2014-09-03 – 2014-09-05
- Data Source
  KAKENHI-PROJECT-26610037
[Presentation] Probability theory on a topological monoid of strings and its application to statistical machine learning
- Author(s)
  Koyano, H. and Hayashida, M.
- Organizer
  International Conference on Recent Advances in Pure and Applied Mathematics
- Place of Presentation
  Antalya, Turkey
- Year and Date
  2014-11-06 – 2014-11-09
- Data Source
  KAKENHI-PROJECT-26610037
[Presentation] Parallelization of Enumerating Tree-like Chemical Compounds by Breadth-first Search Order
- Author(s)
  Hayashida, M., Jindalertudomdee, J., Zhao, Y., Akutsu, T.
- Organizer
  The 8th International Conference on Systems Biology
- Place of Presentation
  Qingdao, China
- Year and Date
  2014-10-24 – 2014-10-27
- Data Source
  KAKENHI-PROJECT-24500361
[Presentation] 文字列クラスタリングのための Laplace 様混合モデルに対する EM アルゴリズム
- Author(s)
  小谷野仁, 林田守広
- Organizer
  日本情報処理学会第 77 回全国大会
- Place of Presentation
  京都大学
- Year and Date
  2015-03-17 – 2015-03-19
- Data Source
  KAKENHI-PROJECT-26610037
[Presentation] ナフタレン環を持つ木状化学構造の幅優先探索による列挙手法
- Author(s)
  Jindalertudomdee Jira, 林田守広, 趙楊, 阿久津達也
- Organizer
  第37回情報化学討論会
- Place of Presentation
  豊橋商工会議所
- Year and Date
  2014-11-27 – 2014-11-28
- Data Source
  KAKENHI-PROJECT-26240034
[Presentation] 文字列の距離空間上の最大マージン識別器とそのタンパク質科学への応用
- Author(s)
  小谷野仁, 林田守広, 阿久津達也
- Organizer
  日本情報処理学会「数理モデル化と問題解決研究会」,「バイオ情報学研究会」及び日本電子情報通信学会「ニューロコンピューティング研究会」,「情報論的学習理論と機械学習研究会」合同研究会
- Place of Presentation
  沖縄科学技術大学院大学
- Year and Date
  2014-06-25 – 2014-06-27
- Data Source
  KAKENHI-PROJECT-26610037
[Presentation] Measuring the similarity of protein structures using image local feature descriptors SIFT and SURF
- Author(s)
  Hayashida, M., Koyano, H., and Akutsu, T.
- Organizer
  The 8th International Conference on Systems Biology and the 4th Translational Bioinformatics Conference
- Place of Presentation
  Qingdao, China
- Year and Date
  2014-10-24 – 2014-10-27
- Data Source
  KAKENHI-PROJECT-26610037
[Presentation] Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels
- Author(s)
  Ruan, P., Hayashida, M., Maruyama, O., Akutsu, T.
- Organizer
  The 12th Asia Pacific Bioinformatics Conference
- Place of Presentation
  Shanghai, China
- Data Source
  KAKENHI-PROJECT-24500361
[Presentation] Parallelization of Enumerating Tree-like Chemical Compounds by Breadth-first Search Order
- Author(s)
  Morihiro Hayashida, Jira Jindalertudomdee, Yang Zhao, Tatsuya Akutsu
- Organizer
  The 8th International Conference on Systems Bioloy
- Place of Presentation
  Qingdao, China
- Year and Date
  2014-10-24 – 2014-10-27
- Data Source
  KAKENHI-PROJECT-26240034
[Presentation] Measuring the Similarity of Protein Structures Using Image Local Feature Descriptors SIFT and SURF
- Author(s)
  Hayashida, M., Koyano, H., Akutsu, T.
- Organizer
  The 8th International Conference on Systems Biology
- Place of Presentation
  Qingdao, China
- Year and Date
  2014-10-24 – 2014-10-27
- Data Source
  KAKENHI-PROJECT-24500361
[Presentation] Study on weight of protein-protein interaction network for prediction of heterodimers
- Author(s)
  Ruan, P., Hayashida, M., Akutsu, T.
- Organizer
  電子情報通信学会総合大会
- Place of Presentation
  新潟大学
- Data Source
  KAKENHI-PROJECT-24500361

1. Hitoshi Koyano (10570989)

# of Collaborated Projects: 4 results

# of Collaborated Products: 37 results
2. AKUTSU Tatsuya (90261859)

# of Collaborated Projects: 4 results

# of Collaborated Products: 31 results
3. NAGAMOCHI Hiroshi (70202231)

# of Collaborated Projects: 3 results

# of Collaborated Products: 3 results
4. KAWABATA Takeo (50214680)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
5. MAEGAWA shingo (30467401)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. MIYANO Satoru (50128104)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. MARUYAMA Osamu (20282519)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. UEDA Nobuhisa (80346048)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 細川浩 (90359779)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 緒方博之 (70291432)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 矢野孝次 (80467646)

# of Collaborated Projects: 1 results

# of Collaborated Products: 13 results
12. NACHER Jose

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results

Hayashida Morihiro 林田 守広

HAYASHIDA Morihiro 林田 守広

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Developing protein function prediction methods and their application to biomarker discoveryPrincipal Investigator

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タンパク質立体構造の進化的保存部位の解析と機能予測への応用Principal Investigator

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Probability theory and statistics on a noncommutative topological monoid of strings and their application to bioremediation

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Development of protein function prediction methods with global substructures and interaction stochastic modelsPrincipal Investigator

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An Approach to Novel Structure Design by Combining Discrete Methods and Statistical Methods

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Statistical theory for string data analysis and its application to computational biochemistry

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Development of protein interaction prediction methods by modeling protein substructuresPrincipal Investigator

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An Approach to Novel Structural Design by Combining Discrete Methods and Kernel Methods

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Global extractionand analysis of protein tertiary structure patternsPrincipal Investigator

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New Methods for Designing Chemical Structures Using Graph Theory and Kernel Methods

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Pattern Matching Methods for Structured Data in Bioinformatics

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[Journal Article] Volume formula and growth rates of the balls of strings under the edit distances2023

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[Journal Article] Computational prediction and interpretation of both general and specific types of promoters in Escherichia coli by exploiting a stacked ensemble-learning framework2020

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Hayashida Morihiro 林田守広

HAYASHIDA Morihiro 林田守広