AOKI YUICHI 青木裕一

… Alternative Names

青木裕一アオキユウイチ

Aoki Yuichi 青木裕一

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Researcher Number	40747599
Other IDs
Affiliation (Current)	2025: 東北大学, 東北メディカル・メガバンク機構, 講師
Affiliation (based on the past Project Information) *help	2023 – 2024: 東北大学, 東北メディカル・メガバンク機構, 講師 2019 – 2021: 東北大学, 東北メディカル・メガバンク機構, 助教 2016 – 2017: 東北大学, 東北メディカル・メガバンク機構, 助教 2015: 東北大学, 情報科学研究科, 産学官連携研究員
Review Section/Research Field	Principal Investigator Plant molecular biology/Plant physiology Except Principal Investigator Basic Section 43060:System genome science-related / Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields / Basic Section 64040:Social-ecological systems-related / Basic Section 37020:Chemistry and chemical methodology of biomolecules-related
Keywords	Principal Investigator RNA-Seq / MNase-Seq / 共発現データベース / シロイヌナズナ / ヌクレオソーム / 遺伝子共発現ネットワーク / 遺伝子共発現 / 遺伝子発現制御 Except Principal Investigator 腸内細菌 / 全消化管 … More / メタゲノム / 全消化管細菌叢 / マイクロバイオータ / NGS / 遺伝的地域性 / 遺伝的多様性 / 分子系統解析 / 分子系統地理 / 森林遺伝資源保全 / 集団遺伝 / ゲノムワイドSNP分析 / MIG-seq分析 / 微細藻 / トランスクリプトーム解析 / アポトーシス / トレボウクシア藻 / 藻類 / プラスチックナノ粒子 / クラミドモナス / 遺伝子発現変化 / 樹脂製ナノ粒子 / 樹脂系 / 細胞死誘導 / 細胞増殖阻害 / 薬剤耐性 / 活性酸素種 / 生分解性 / 増殖阻害 / 微細プラスチック / ナノ粒子 / シアノアクリレート / LED / メタボローム / 二次代謝 / 一次代謝 / 機械学習 / メタボロミクス / 量子化学 / UVスペクトル / アントシアニン / 分子軌道計算 / 二次代謝物 / シロイヌナズナ / 植物 / 量子化学計算 Less

Integrated analysis of genetic diversity of all conifers in Japan
- Principal Investigator
  
  陶山佳久
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields
- Research Institution
  Tohoku University
メタゲノム解析による人体の全消化管細菌叢の同定と臨床応用へのアプローチ
- Principal Investigator
  
  石沢興太
- Project Period (FY)
  2023 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  Tohoku University
Digital chemical mapping by treatment of narrow-band LED light in the plant metabolome
- Principal Investigator
  
  Kusano Miyako
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 37020:Chemistry and chemical methodology of biomolecules-related
- Research Institution
  University of Tsukuba
Analyses of abnormal physiological responses induced by stable resin nanoparticles and its species spectrum
- Principal Investigator
  
  Ohama Takeshi
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 64040:Social-ecological systems-related
- Research Institution
  Kochi University of Technology
Impact of Nucleosome Positioning on Gene Coexpression Network ArchitecturePrincipal Investigator
- Principal Investigator
  
  Aoki Yuichi
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Plant molecular biology/Plant physiology
- Research Institution
  Tohoku University

All 2018 2017 2016 2015

All Journal Article Presentation Book

[Book] AI導入によるバイオテクノロジーの発展2018
- Author(s)
  青木裕一（監修: 植田充美）
- Total Pages
  234
- Publisher
  シーエムシー出版
- ISBN
  9784781313153
- Data Source
  KAKENHI-PROJECT-15K20863
[Journal Article] ATTED-II in 2018: A Plant Coexpression Database based on Investigation of Statistical Property of the Mutual Rank Index.2018
- Author(s)
  Obayashi T, Aoki Y, Tadaka S, Kagaya Y, Kinoshita K.
- Journal Title
  
  Plant Cell Physiology
  
  Volume: 59 Issue: 1 Pages: e3-e3
- DOI
  10.1093/pcp/pcx191
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K18464, KAKENHI-PROJECT-15K20863
[Journal Article] Root-knot and cyst nematodes activate procambium-associated genes in Arabidopsis roots2017
- Author(s)
  Yasuka L Yamaguchi, Reira Suzuki, Javier Cabrera, Satoru Nakagami, Tomomi Sagara, Chika Ejima, Ryosuke Sano, Yuichi Aoki, Rocio Olmo Lopez, Tetsuya Kurata, Takeshi Obayashi, Taku Demura, Takashi Ishida, Carolina Escobar, Shinichiro Sawa
- Journal Title
  
  Frontiers in Plant Science
  
  Volume: 8 Pages: 1195-1195
- DOI
  10.3389/fpls.2017.01195
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K20863, KAKENHI-PROJECT-17H03967
[Journal Article] ALCOdb: Gene Coexpression Database for Microalgae.2016
- Author(s)
  Aoki Y, Okamura Y, Ohta H, Kinoshita K, Obayashi T.
- Journal Title
  
  Plant Cell Physiology
  
  Volume: 57 Issue: 1 Pages: e3-e3
- DOI
  10.1093/pcp/pcv190
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15K18464, KAKENHI-PROJECT-15K20863, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114005
[Journal Article] ATTED-II in 2016: a plant coexpression database towards lineage-specific coexpression.2016
- Author(s)
  Aoki Y, Okamura Y, Tadaka S, Kinoshita K, Obayashi T.
- Journal Title
  
  Plant Cell Physiology
  
  Volume: 57 Issue: 1 Pages: e5-e5
- DOI
  10.1093/pcp/pcv165
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15K18464, KAKENHI-PROJECT-15K20863, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114005
[Presentation] シロイヌナズナの遺伝子共発現ネットワークにおけるタンパク質細胞内局在の影響2018
- Author(s)
  青木裕一, 大林武, 木下賢吾
- Organizer
  第59回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] 遺伝子の機能推定における深層学習技術の活用2017
- Author(s)
  青木裕一
- Organizer
  第4回東北大学人工知能学研究会
- Invited
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] 人工知能技術の分子生物学研究への応用2017
- Author(s)
  青木裕一
- Organizer
  日本農芸化学会中部支部第181回例会
- Invited
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] 深層学習を用いた遺伝子の機能推定2017
- Author(s)
  青木裕一
- Organizer
  第35回日本植物細胞分子生物学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] 深層学習を用いた植物分子生物学2017
- Author(s)
  青木裕一
- Organizer
  植物科学シンポジウム2017
- Invited
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] Impact of Evolutionary Age on Gene Coexpression and Core Promoter Architecture in A. thaliana2017
- Author(s)
  青木裕一, 大林武, 木下賢吾
- Organizer
  第58回日本植物生理学会年会
- Place of Presentation
  鹿児島大学（鹿児島県・鹿児島市）
- Year and Date
  2017-03-16
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] 生物ビッグデータ時代における人工知能の可能性2017
- Author(s)
  青木裕一
- Organizer
  仙台プラズマフォーラム
- Invited
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] 植物研究への深層学習の応用2017
- Author(s)
  青木裕一
- Organizer
  第11回植物バイオ研究会
- Invited
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] Gene age determines the fundamental structure of the gene coexpression network2016
- Author(s)
  Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita
- Organizer
  24th Annual International conference on Intelligent Systems for Molecular Biology
- Place of Presentation
  Orlando（USA）
- Year and Date
  2016-07-10
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] Impact of evolutionary age on gene coexpression network architecture2016
- Author(s)
  Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita
- Organizer
  第5回生命医薬情報学連合大会（IIBMP 2016）
- Place of Presentation
  東京国際交流館プラザ平成（東京都・江東区）
- Year and Date
  2016-09-29
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] Impact of Evolutionary Age on Gene Co-expression Network Architecture in Arabidopsis thaliana2016
- Author(s)
  Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita
- Organizer
  The 3rd CWRU-Tohoku Joint workshop Collaboration on Data Science Engineering
- Place of Presentation
  Tohoku University（Sendai, Miyagi）
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] Gene Coexpression Analysis of Chlamydomonas by Using ALCOdb2016
- Author(s)
  Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita
- Organizer
  17th International Conference on the Cell and Molecular Biology of Chlamydomonas
- Place of Presentation
  Kyoto International Conference Center（Kyoto）
- Year and Date
  2016-06-26
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] 遺伝子共発現による機能モジュール探索手法のラン藻への応用2016
- Author(s)
  青木裕一, 大林武, 木下賢吾
- Organizer
  平成28年度ラン藻ゲノム交流会
- Place of Presentation
  東京大学（東京都・目黒区）
- Invited
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] Identification of Genomic Features Associated with Gene Coexpression in Arabidopsis thaliana2016
- Author(s)
  Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita
- Organizer
  第57回日本植物生理学会年会
- Place of Presentation
  岩手大学（盛岡市）
- Year and Date
  2016-03-19
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] Effect of Nucleosome Positioning on Gene Co-expression Network in Arabidopsis thaliana2016
- Author(s)
  Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita
- Organizer
  第34回日本植物細胞分子生物学会（上田）大会
- Place of Presentation
  信州大学（長野県・上田市）
- Year and Date
  2016-09-01
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] Involvement of evolutionary age in transcription factor mediated gene regulatory network2016
- Author(s)
  Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita
- Organizer
  ISMB2016 RegGenSIG
- Place of Presentation
  Orlando（USA）
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] Impact of Evolutionary Age on Gene Coexpression Network and Gene Functional Relationship2016
- Author(s)
  Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita
- Organizer
  第39回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜（神奈川県・横浜市）
- Year and Date
  2016-11-30
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] 藍藻の遺伝子共発現データベース構築の現状と課題2015
- Author(s)
  青木裕一, 大林武, 木下賢吾
- Organizer
  藍藻の分子生物学2015
- Place of Presentation
  かずさアカデミアホール（木更津市）
- Year and Date
  2015-11-16
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] ALCOdb: a gene coexpression database for microalgal species2015
- Author(s)
  Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita
- Organizer
  ISMB/ECCB2015
- Place of Presentation
  Convention Centre Dublin, Ireland
- Year and Date
  2015-07-12
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] 微細藻類の遺伝子共発現データベースALCOdbの構築と光合成研究への応用2015
- Author(s)
  青木裕一, 大林武, 木下賢吾
- Organizer
  第6回日本光合成学会年会
- Place of Presentation
  岡山国際交流センター（岡山市）
- Year and Date
  2015-05-22
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] NGSデータを駆使した非モデル生物の遺伝子共発現解析2015
- Author(s)
  青木裕一, 大林武, 木下賢吾
- Organizer
  NGS現場の会第四回研究会
- Place of Presentation
  つくば国際会議場（つくば市）
- Year and Date
  2015-07-02
- Invited
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] ALCOdbを用いたクラミドモナスの遺伝子共発現解析2015
- Author(s)
  青木裕一, 大林武, 木下賢吾
- Organizer
  第12回クラミドモナス研究会
- Place of Presentation
  中央大学（東京都文京区）
- Year and Date
  2015-09-03
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] Relationship Analysis between Nucleosome Positioning Dynamics and Gene Coexpression2015
- Author(s)
  Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita
- Organizer
  BMB2015(第38回日本分子生物学会年会)
- Place of Presentation
  神戸ポートアイランド（神戸市）
- Year and Date
  2015-12-02
- Data Source
  KAKENHI-PROJECT-15K20863
[Presentation] Relationship Analysis between 3D Genome Architecture and Gene Coexpression2015
- Author(s)
  Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita
- Organizer
  生命医薬情報学連合大会2015年大会
- Place of Presentation
  京都大学（宇治市）
- Year and Date
  2015-10-30
- Data Source
  KAKENHI-PROJECT-15K20863

1. Kusano Miyako (60415148)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. Ohama Takeshi (00194267)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 立川仁典 (00267410)

# of Collaborated Projects: 1 results

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4. 福島敦史 (80415281)

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5. 林八寿子 (20228597)

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6. 右手浩一 (30176713)

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7. 陶山佳久 (60282315)

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8. 北村系子 (00343814)

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9. 津村義彦 (20353774)

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10. Worth James (30770771)

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11. 内山憲太郎 (40501937)

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12. 戸丸信弘 (50241774)

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13. 岩泉正和 (50391701)

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14. 高橋大樹 (50913216)

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15. 逢沢峰昭 (70436294)

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16. 玉城聡 (80370857)

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17. 石沢興太 (60400313)

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18. 菅野武 (30757886)

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19. 高山真 (80579954)

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20. OBAYASHI Takeshi

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21. 木下賢吾

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AOKI YUICHI 青木 裕一

青木 裕一 アオキ ユウイチ

Aoki Yuichi 青木 裕一

Research Projects

Research Products

Co-Researchers

Integrated analysis of genetic diversity of all conifers in Japan

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

メタゲノム解析による人体の全消化管細菌叢の同定と臨床応用へのアプローチ

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Digital chemical mapping by treatment of narrow-band LED light in the plant metabolome

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Analyses of abnormal physiological responses induced by stable resin nanoparticles and its species spectrum

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Impact of Nucleosome Positioning on Gene Coexpression Network ArchitecturePrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] AI導入によるバイオテクノロジーの発展2018

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Journal Article] ATTED-II in 2018: A Plant Coexpression Database based on Investigation of Statistical Property of the Mutual Rank Index.2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Root-knot and cyst nematodes activate procambium-associated genes in Arabidopsis roots2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] ALCOdb: Gene Coexpression Database for Microalgae.2016

Author(s)

Journal Title

DOI

Data Source

[Journal Article] ATTED-II in 2016: a plant coexpression database towards lineage-specific coexpression.2016

Author(s)

Journal Title

DOI

Data Source

[Presentation] シロイヌナズナの遺伝子共発現ネットワークにおけるタンパク質細胞内局在の影響2018

Author(s)

Organizer

Data Source

[Presentation] 遺伝子の機能推定における深層学習技術の活用2017

Author(s)

Organizer

Data Source

[Presentation] 人工知能技術の分子生物学研究への応用2017

Author(s)

Organizer

Data Source

[Presentation] 深層学習を用いた遺伝子の機能推定2017

Author(s)

Organizer

Data Source

[Presentation] 深層学習を用いた植物分子生物学2017

Author(s)

AOKI YUICHI 青木裕一

青木裕一アオキユウイチ

Aoki Yuichi 青木裕一