Takemata Naomichi 竹俣直道

Researcher Number	40883830
Other IDs
Affiliation (Current)	2026: 立命館大学, 生命科学部, 准教授
Affiliation (based on the past Project Information) *help	2026: 立命館大学, 生命科学部, 准教授 2021 – 2024: 京都大学, 工学研究科, 助教
Review Section/Research Field	Principal Investigator Basic Section 43050:Genome biology-related / Transformative Research Areas, Section (III) / 0701:Biology at molecular to cellular levels, and related fields
Keywords	Principal Investigator アーキア / 染色体構造 / リバースジャイレース / DNA超らせん / SMCタンパク質 / 進化 / SMC / 染色体三次元構造 / 超好熱菌 / トポイソメラーゼ / 染色体ドメイン

Research Projects
(5 results)
Research Products
(57 results)

超好熱菌ゲノムの熱防御機構とその進化的意義Principal Investigator
- Principal Investigator
  
  竹俣直道
- Project Period (FY)
  2026 – 2028
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43050:Genome biology-related
- Research Institution
  Ritsumeikan University
アーキアコンデンシンとDNA超らせんによる染色体構造制御Principal Investigator
- Principal Investigator
  
  竹俣直道
- Project Period (FY)
  2023 – 2024
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  Kyoto University
Role of reverse gyrase for genome organization and adaptation to hyperthermal environmentsPrincipal Investigator
- Principal Investigator
  
  Takemata Naomichi
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 43050:Genome biology-related
- Research Institution
  Kyoto University
第三の生物ドメイン「アーキア」がもつ機能未知SMC様タンパク質の研究Principal Investigator
- Principal Investigator
  
  竹俣直道
- Project Period (FY)
  2021 – 2022
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  Kyoto University
Evolution of the SMC complex: insight from archaeaPrincipal Investigator
- Principal Investigator
  
  Takemata Naomichi
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Research Activity Start-up
- Review Section
  
  0701:Biology at molecular to cellular levels, and related fields
- Research Institution
  Kyoto University

All 2025 2024 2023 2022

All Journal Article Presentation

[Journal Article] Chromosomal domain formation by archaeal SMC, a roadblock protein, and DNA structure2025
- Author(s)
  Yamaura Kodai、Takemata Naomichi、Kariya Masashi、Osaka Ayami、Ishino Sonoko、Yamauchi Masataka、Tamura Tomonori、Hamachi Itaru、Takada Shoji、Ishino Yoshizumi、Atomi Haruyuki
- Journal Title
  
  Nature Communications
  
  Volume: 16 Issue: 1 Pages: 1312-1312
- DOI
  10.1038/s41467-025-56197-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-23H04281, KAKENHI-PROJECT-23K21151, KAKENHI-PROJECT-22K15083, KAKENHI-PROJECT-24K01991
[Journal Article] Hi-C/3C-seq Data Analysis for Prokaryotic Genomes with HiC-Pro2024
- Author(s)
  Takemata Naomichi
- Journal Title
  
  Computational Methods for 3D Genome Analysis
  
  Volume: n/a Pages: 157-176
- DOI
  10.1007/978-1-0716-4136-1_9
- ISBN
  9781071641354, 9781071641361
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23H04281, KAKENHI-PROJECT-22K15083
[Journal Article] Capturing chromosome conformation in Crenarchaea2024
- Author(s)
  Elyza Pilatowski-Herzing, Rachel Y. Samson, Naomichi Takemata, Catherine Badel, Peter B. Bohall, Stephen D. Bell
- Journal Title
  
  Molecular Microbiology
  
  Volume: 00 Issue: 2 Pages: 1-8
- DOI
  10.1111/mmi.15245
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K20636, KAKENHI-PUBLICLY-23H04281, KAKENHI-PROJECT-22K15083
[Journal Article] How Do Thermophiles Organize Their Genomes?2024
- Author(s)
  Takemata Naomichi
- Journal Title
  
  Microbes and Environments
  
  Volume: 39 Issue: 5 Pages: n/a
- DOI
  10.1264/jsme2.ME23087
- ISSN
  1342-6311, 1347-4405
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-23H04281, KAKENHI-PROJECT-22K15083
[Journal Article] Facultative heterochromatin formation in rDNA is essential for cell survival during nutritional starvation.2022
- Author(s)
  Hayato Hirai, Naomichi Takemata, Miki Tamura, Kunihiro Ohta
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 50 Issue: 7 Pages: 3727-3744
- DOI
  10.1093/nar/gkac175
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K15083, KAKENHI-PROJECT-21K20636, KAKENHI-PUBLICLY-21H05747
[Presentation] アーキアゲノムの動作原理の理解に向けて2025
- Author(s)
  竹俣直道
- Organizer
  学際分野としての微生物研究会第１回「あつまれ！びせいぶつの森」
- Invited
- Data Source
  KAKENHI-PUBLICLY-23H04281
[Presentation] アーキア SMC 複合体を介した染色体ドメイン形成機構2025
- Author(s)
  竹俣直道
- Organizer
  第 42 回染色体ワークショップ・第 23 回核ダイナミクス研究会
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] アーキアゲノムの動作原理の理解に向けて2025
- Author(s)
  竹俣直道
- Organizer
  学際分野としての微生物研究会第１回「あつまれ！びせいぶつの森」
- Invited
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] アーキア SMC 複合体を介した染色体ドメイン形成機構2025
- Author(s)
  竹俣直道
- Organizer
  第 42 回染色体ワークショップ・第 23 回核ダイナミクス研究会
- Data Source
  KAKENHI-PUBLICLY-23H04281
[Presentation] アーキアの染色体ドメイン形成機構2024
- Author(s)
  竹俣直道
- Organizer
  第41回染色体ワークショップ・第22回核ダイナミクス研究会
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] 好熱菌におけるリバースジャイレースの役割2024
- Author(s)
  竹俣直道
- Organizer
  第47回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] Eukaryotic-like mechanism of chromosomal domain formation by archaeal SMC, a roadblock NAP, and DNA structure2024
- Author(s)
  竹俣直道
- Organizer
  SMC complexes: orchestrating diverse genome functions
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-23H04281
[Presentation] 3D genome organization in archaea2024
- Author(s)
  竹俣直道
- Organizer
  RIKEN International Symposium: The 3D genome
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-23H04281
[Presentation] アーキアの染色体ドメイン形成機構2024
- Author(s)
  竹俣直道
- Organizer
  第 41 回染色体ワークショップ・第 22 回核ダイナミクス研究会
- Data Source
  KAKENHI-PUBLICLY-23H04281
[Presentation] Molecular Mechanism of Chromosomal Domain Formation in Archaea2024
- Author(s)
  竹俣直道
- Organizer
  RIKEN International Symposium on Nuclear Structure and Function
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K20636
[Presentation] 3D genome organization in archaea2024
- Author(s)
  竹俣直道
- Organizer
  RIKEN International Symposium: The 3D genome
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] 好熱菌におけるリバースジャイレースの役割2024
- Author(s)
  竹俣直道
- Organizer
  第47回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PUBLICLY-23H04281
[Presentation] アーキアSMC複合体を基盤とした染色体ドメイン構造の形成機構2024
- Author(s)
  竹俣直道
- Organizer
  第 36 回日本 Archaea 研究会講演会
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] Molecular Mechanism of Chromosomal Domain Formation in Archaea2024
- Author(s)
  竹俣直道
- Organizer
  RIKEN International Symposium on Nuclear Structure and Function
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] Eukaryotic-like mechanism of chromosomal domain formation by archaeal SMC, a roadblock NAP, and DNA shape2024
- Author(s)
  竹俣直道
- Organizer
  EMBO workshop "Molecular biology of Archaea"
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-23H04281
[Presentation] アーキアの染色体ドメイン形成機構2024
- Author(s)
  竹俣直道
- Organizer
  第 41 回染色体ワークショップ・第 22 回核ダイナミクス研究会
- Data Source
  KAKENHI-PROJECT-21K20636
[Presentation] アーキアSMC複合体を基盤とした染色体ドメイン構造の形成機構2024
- Author(s)
  竹俣直道
- Organizer
  第 36 回日本 Archaea 研究会講演会
- Data Source
  KAKENHI-PUBLICLY-23H04281
[Presentation] Eukaryotic-like mechanism of chromosomal domain formation by archaeal SMC, a roadblock NAP, and DNA shape2024
- Author(s)
  竹俣直道
- Organizer
  EMBO workshop "Molecular biology of Archaea"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] Eukaryotic-like mechanism of chromosomal domain formation by archaeal SMC, a roadblock NAP, and DNA structure2024
- Author(s)
  竹俣直道
- Organizer
  SMC complexes: orchestrating diverse genome functions
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] Molecular mechanism of SMC-mediated domain formation in archaea2023
- Author(s)
  竹俣直道
- Organizer
  第3回Hi-C研究会
- Invited
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] アーキアにおける染色体ドメイン構造の形成機構2023
- Author(s)
  竹俣直道
- Organizer
  第24回極限環境生物学会年会
- Data Source
  KAKENHI-PUBLICLY-23H04281
[Presentation] SMC複合体とバウンダリー因子によるアーキア染色体の構造化機構2023
- Author(s)
  竹俣直道
- Organizer
  日本ゲノム微生物学会第17回年会
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] アーキアにおける染色体ドメイン構造の形成機構2023
- Author(s)
  竹俣直道
- Organizer
  第24回極限環境生物学会年会
- Data Source
  KAKENHI-PROJECT-21K20636
[Presentation] Molecular mechanism of SMC-mediated domain formation in archaea2023
- Author(s)
  竹俣直道
- Organizer
  Gordon Research Conference: Chromosome Biology From Cellular, Molecular and Physical Perspectives
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K20636
[Presentation] Molecular mechanism of SMC-mediated domain formation in archaea2023
- Author(s)
  竹俣直道
- Organizer
  第3回Hi-C研究会
- Invited
- Data Source
  KAKENHI-PUBLICLY-23H04281
[Presentation] SMC複合体とバウンダリー因子によるアーキア染色体の構造化機構2023
- Author(s)
  竹俣直道
- Organizer
  日本ゲノム微生物学会第17回年会
- Data Source
  KAKENHI-PUBLICLY-21H05747
[Presentation] アーキアにおける染色体ドメイン構造の形成機構2023
- Author(s)
  竹俣直道
- Organizer
  第24回極限環境生物学会年会
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] Molecular mechanism of SMC-mediated domain formation in archaea2023
- Author(s)
  竹俣直道
- Organizer
  Gordon Research Conference: Chromosome Biology From Cellular, Molecular and Physical Perspectives
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] Molecular mechanism of SMC-mediated domain formation in archaea2023
- Author(s)
  竹俣直道
- Organizer
  第3回Hi-C研究会
- Invited
- Data Source
  KAKENHI-PROJECT-21K20636
[Presentation] Molecular mechanism of SMC-mediated domain formation in archaea2023
- Author(s)
  竹俣直道
- Organizer
  Chromosome Dynamics Gordon Research Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-23H04281
[Presentation] SMC複合体とバウンダリー因子によるアーキア染色体の構造化機構2023
- Author(s)
  竹俣直道
- Organizer
  日本ゲノム微生物学会第17回年会
- Data Source
  KAKENHI-PROJECT-21K20636
[Presentation] アーキアにおける染色体高次構造の制御とその意義2022
- Author(s)
  竹俣直道
- Organizer
  日本遺伝学会第94回大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-21H05747
[Presentation] SMC複合体とバウンダリー因子によるアーキアTADの形成機構2022
- Author(s)
  竹俣直道
- Organizer
  第45回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-21K20636
[Presentation] Archaeal Smc-ScpAB and the Xer recombinase create TAD-like structures2022
- Author(s)
  竹俣直道
- Organizer
  Genome organisation by SMC complexes
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] 超好熱性アーキアから探る染色体の構造と機能の進化2022
- Author(s)
  竹俣直道
- Organizer
  第23回極限環境生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-21K20636
[Presentation] 第三の生物ドメイン「アーキア」はセントロメアをもつか?2022
- Author(s)
  竹俣直道
- Organizer
  第45回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] Archaeal Smc-ScpAB and the Xer recombinase create TAD-like structures2022
- Author(s)
  竹俣直道
- Organizer
  Genome organisation by SMC complexes
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K20636
[Presentation] Condensin-mediated organization of archaeal chromosomes2022
- Author(s)
  竹俣直道
- Organizer
  EMBO Molecular Biology of Archaea
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-21H05747
[Presentation] Condensin-mediated organization of archaeal chromosomes2022
- Author(s)
  竹俣直道
- Organizer
  EMBO Molecular Biology of Archaea
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] SMC複合体とバウンダリー因子によるアーキアTADの形成機構2022
- Author(s)
  竹俣直道
- Organizer
  第45回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] アーキアにおける染色体高次構造の制御とその意義2022
- Author(s)
  竹俣直道
- Organizer
  日本遺伝学会第94回大会
- Invited
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] SMC複合体を基盤としたアーキア染色体の構築機構2022
- Author(s)
  竹俣直道
- Organizer
  第74回日本細胞生物学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-21K20636
[Presentation] SMC複合体とバウンダリー因子によるアーキアTADの形成機構2022
- Author(s)
  竹俣直道
- Organizer
  第45回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PUBLICLY-21H05747
[Presentation] SMC複合体を基盤としたアーキア染色体の構築機構2022
- Author(s)
  竹俣直道
- Organizer
  第74回日本細胞生物学会大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-21H05747
[Presentation] 超好熱性アーキアから探る染色体の構造と機能の進化2022
- Author(s)
  竹俣直道
- Organizer
  第23回極限環境生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] 第三の生物ドメイン「アーキア」はセントロメアをもつか？2022
- Author(s)
  竹俣直道
- Organizer
  第45回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PUBLICLY-21H05747
[Presentation] アーキアにおける染色体高次構造の制御とその意義2022
- Author(s)
  竹俣直道
- Organizer
  日本遺伝学会第94回大会
- Invited
- Data Source
  KAKENHI-PROJECT-21K20636
[Presentation] Archaeal Smc-ScpAB and the Xer recombinase create TAD-like structures2022
- Author(s)
  竹俣直道
- Organizer
  Genome organisation by SMC complexes
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-21H05747
[Presentation] Condensin-mediated organization of archaeal chromosomes2022
- Author(s)
  竹俣直道
- Organizer
  EMBO Molecular Biology of Archaea
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K20636
[Presentation] SMC複合体を基盤としたアーキア染色体の構築機構2022
- Author(s)
  竹俣直道
- Organizer
  第74回日本細胞生物学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-22K15083
[Presentation] 第三の生物ドメイン「アーキア」はセントロメアをもつか?2022
- Author(s)
  竹俣直道
- Organizer
  第45回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-21K20636
[Presentation] 超好熱性アーキアから探る染色体の構造と機能の進化2022
- Author(s)
  竹俣直道
- Organizer
  第23回極限環境生物学会年会
- Invited
- Data Source
  KAKENHI-PUBLICLY-21H05747

Takemata Naomichi 竹俣 直道

Research Projects

Research Products

超好熱菌ゲノムの熱防御機構とその進化的意義Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

アーキアコンデンシンとDNA超らせんによる染色体構造制御Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Role of reverse gyrase for genome organization and adaptation to hyperthermal environmentsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

第三の生物ドメイン「アーキア」がもつ機能未知SMC様タンパク質の研究Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Evolution of the SMC complex: insight from archaeaPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Chromosomal domain formation by archaeal SMC, a roadblock protein, and DNA structure2025

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Hi-C/3C-seq Data Analysis for Prokaryotic Genomes with HiC-Pro2024

Author(s)

Journal Title

DOI

ISBN

Data Source

[Journal Article] Capturing chromosome conformation in Crenarchaea2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] How Do Thermophiles Organize Their Genomes?2024

Author(s)

Journal Title

DOI

ISSN

Language

Data Source

[Journal Article] Facultative heterochromatin formation in rDNA is essential for cell survival during nutritional starvation.2022

Author(s)

Journal Title

DOI

Data Source

[Presentation] アーキアゲノムの動作原理の理解に向けて2025

Author(s)

Organizer

Data Source

[Presentation] アーキア SMC 複合体を介した染色体ドメイン形成機構2025

Author(s)

Organizer

Data Source

[Presentation] アーキアゲノムの動作原理の理解に向けて2025

Author(s)

Organizer

Data Source

[Presentation] アーキア SMC 複合体を介した染色体ドメイン形成機構2025

Author(s)

Organizer

Data Source

[Presentation] アーキアの染色体ドメイン形成機構2024

Author(s)

Organizer

Takemata Naomichi 竹俣直道