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MATSUDA Hideo  松田 秀雄

… Alternative Names

松田 秀雄

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Researcher Number 50183950
Other IDs
  • ORCIDhttps://orcid.org/0000-0002-4701-3779
External Links
Affiliation (Current) 2025: 大阪大学, 大学院情報科学研究科, 招へい教授
Affiliation (based on the past Project Information) *help 2022 – 2024: 大阪大学, 大学院情報科学研究科, 教授
2012 – 2021: 大阪大学, 情報科学研究科, 教授
2007 – 2011: Osaka University, 大学院・情報科学研究科, 教授
2006: 大阪大学, 大学院情報科学研究科, 教授
2002 – 2005: Osaka University, Graduate School of Information Science and Technology, Professor, 大学院・情報科学研究科, 教授 … More
2004: Osaka University, Graduate School of Information Science and Technology, Professor, 大学院情報科学研究科, 教授
2002: 大阪大学, 大学院・情報科学研究科, 助教授
1997 – 2001: 大阪大学, 大学院・基礎工学研究科, 助教授
2000: 大阪大学, 大学院・基礎工学研究科情報数理系専攻, 助教授
1999: 大阪大学, 大学院・基礎工学研究所, 助教授
1996: 大阪大学, 基礎工学研究科, 助教授
1995 – 1996: 大阪大学, 基礎工学部, 助教授
1994: 神戸大学, 光学部, 助教授
1994: 神戸大学, 工学部, 助教授
1992 – 1993: 神戸大学, 工学部, 講師
1989 – 1990: 神戸大学, 工学部, 講師
1989: 神戸大学, 工学部, 助手
1987: 神戸大学, 工学部, 助手 Less
Review Section/Research Field
Principal Investigator
Intelligent informatics / Medium-sized Section 62:Applied informatics and related fields / Life / Health / Medical informatics / System genome science / Science and Engineering / Biological Sciences / Complex systems / 計算科学
Except Principal Investigator
Biological Sciences / Basic Section 42040:Laboratory animal science-related … More / Intelligent informatics / 計算機工学 / 電子通信系統工学 / Food science / 機械工作 Less
Keywords
Principal Investigator
バイオインフォマティクス / 遺伝子発現解析 / 遺伝子配列解析 / 1細胞トランスクリプトーム解析 / 細胞追跡 / ゲノム情報解析 / cDNA / 分子進化 / 細胞系譜解析 / 細胞系譜推定 … More / 細胞遊走 / ベイジアンネットワーク / 代謝パスウェイ / 機能注釈 / マイクロアレイ / クラスタリング / 人工生命 / 遺伝的アルゴリズム / ゲノム情報処理 / 細胞系譜 / 1細胞RNAシーケンス / 細胞アトラス / 免疫細胞 / 細胞イメージング解析 / 細胞イメージング / Genome Information Analysis / Metabolic Pathway / DNAチップ / 脂肪細胞 / 生体イメージング / 遺伝子制御ネットワーク / 細胞分化 / 遺伝子ネットワーク / 異種データベース / 情報システム / データグリッド / モチーフ / 生物情報科学 / 遺伝子分類 / 組合せ最適化 / 最尤法 / 分子系統解析 / 並列処理 / 細胞種推定 / 融合遺伝子検出 / 遺伝子発現プロファイル解析 / RNAシーケンシングデータ解析 / 1細胞トランスクリプトーム / 1細胞トランスクリプトーム解析 / 炎症 / 1細胞トランスクリプトーム / 生体イメージング解析 / 1細胞RNAシーケンス解析 / 1細胞RNAシーケンシング解析 / 時系列データ解析 / トランスクリプトーム解析 / ネットワーク解析 / 1細胞RNAシーケンシング / 1細胞RNAシーケンシング / 動的ベイジアンネットワークモデル / 遺伝子制御ネットワーク推定 / 生体シミュレーション / 炎症反応 / 細胞動態 / セグメンテーション / イメージング解析 / Knowledgebase / Database Federation / Genome Database / Grid Computing / データ検索インターフェース / XML / 知識ベース / データベース連携 / ゲノムデータベース / グリッドコンピューティング / Gene Regulatory Network / Transcription Factor Binding Site / Transcription Factor / Microarray / 配列モチーフ / 転写因子結合配列 / 転写因子 / 代謝経路 / Gene Sequence Analysis / cDNA Microarray / Functional Annotation / Gene Interactions / Gene Exnression Analysis / 遺伝子相互作用 / Bioinformatics / multiple alignment / metabolic pathway / gene expression pattern / DNA chip / gene classification / genetic sequence analysis / 多重アライメント / 代謝反応パスウェイ / 遺伝子発現パターン / 大規模データ解析 / 褐色脂肪細胞 / 熱産生 / microRNA / モデル化とシミュレーション / 細胞トラッキング / 蛍光イメージング / バイオイメージインフォマティクス / 数理モデル / 画像処理 / 細胞画像解析 / 遺伝子発現プロファイル / 大規模ファルシステム / ワークフロー / Webサービス / 大規模ファイルシステム / 情報検索 / ゲノム情報 / 系統樹 / 分子系統樹 / コード領域予測 / 最尤推定 / 論理型言語 / データベース … More
Except Principal Investigator
データベース / Prolog / siRNA / 配列解析 / ゲノムアノテーション / バイオインフォマティクス / 転写因子 / ブラストイド / iPS細胞 / ES細胞 / 全能性 / Image Processing of Micrographs / Phenome / Comparative Genomics / Transcription Start Site Analysis / Genome Sequencing / Bioinformatics / ゲノム / アミノ酸モチーフ / アラインメント / ヒトゲノム / データマイニング / アルゴリズム / ゲノム情報 / オリゴマ設計 / DNAチップ / ゲノム解析ソフトウエア / ゲノム配列解読 / 遺伝子発現量解析 / RNAi / 遺伝子予測 / 顕微鏡画像解析 / フェノーム / 表現型 / 比較ゲノム / 転写開始点 / ゲノム解読 / Genetic diseases / Pathway / Molecular interactions / Network / Database / Protein structure prediction / Gene function prediction / Genome analysis / 遺伝子疾患 / パスウェイ / 分子間相互作用 / ネットワーク / タンパク質立体構造予測 / 遺伝子機能予測 / ゲノム解析 / Workstation network / Field / Agent / Multi-agent / Distributed computing / 並列処理 / 協調処理 / ワークステーションネットワーク / リ-クステーションネットワーク / 場 / エージェント / マルチエージェント / 分散協調処理 / knowledge base / relational database / processor array / data base machine / 関係ベ-タ・ベ-ス / デ-タ・ベ-スマシン / 関係デ-タベ-ス / 知識ベ-ス / デ-タベ-スマシン / 関係データベース / 知識ベース / プロセッサアレイ / データベースマシン / マイクロプロセッサ並列処理 / 多次元ディジタルフィルタの構成 / 多次元ディジタルフィルタの設計 / 多次元ディジタル信号処理 / メタボリック症候群 / 褐色脂肪 / 脂肪細胞 / エネルギー代謝 / 肥満 / 植物ゲノム解析 / 発現解析 / ゲノムリシーケンス / 疾患関連遺伝子解析 / 病原微生物解析 / ゲノム リシーケンス / 表現型解析 / 情報解析 / マルチエージェントシステムソフトウェアプロセス / 生産性 / リスケジュ-リング / スケジュ-リング / 生産時点情報管理 / 生産管理 / 生産情報 / 分散処理 / シミュレーション / リスケジューリング / POPシステム / CIM Less
  • Research Projects

    (33 results)
  • Research Products

    (133 results)
  • Co-Researchers

    (41 People)
  •  自律的な初期胚形成が可能な全能性状態の誘導

    • Principal Investigator
      堀江 恭二
    • Project Period (FY)
      2024 – 2027
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 42040:Laboratory animal science-related
    • Research Institution
      Nara Medical University
  •  Development of cell lineage inference method from cell atlas based on information criteriaPrincipal Investigator

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      2021 – 2024
    • Research Category
      Grant-in-Aid for Challenging Research (Exploratory)
    • Review Section
      Medium-sized Section 62:Applied informatics and related fields
    • Research Institution
      Osaka University
  •  Development of integrated analysis method of single-cell transcriptome data for elucidating inflammatory processPrincipal Investigator

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      2020 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      Osaka University
  •  Development of multiple classification and comparison methods of cells based on information criteria and their applications to Cell AtlasPrincipal Investigator

    • Principal Investigator
      MATSUDA Hideo
    • Project Period (FY)
      2019 – 2021
    • Research Category
      Grant-in-Aid for Challenging Research (Exploratory)
    • Review Section
      Medium-sized Section 62:Applied informatics and related fields
    • Research Institution
      Osaka University
  •  Analysis of migration dynamics of inflammatory cells by bio-imaging and development of its simulation methodPrincipal Investigator

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      2018 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Research Institution
      Osaka University
  •  Development of cell diversity analysis method based on gene regulatory prediction by Bayesian networkPrincipal Investigator

    • Principal Investigator
      MATSUDA Hideo
    • Project Period (FY)
      2018 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 62:Applied informatics and related fields
    • Research Institution
      Osaka University
  •  Comprehensive and Systematic Analysis of Cell Migration Dynamics by Real-Time BioimagingPrincipal Investigator

    • Principal Investigator
      MATSUDA Hideo
    • Project Period (FY)
      2016 – 2018
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Osaka University
  •  Development of Systematic Analysis Method of Gene Network for Adipocyte TransdifferentiationPrincipal Investigator

    • Principal Investigator
      Matsuda Hideo
    • Project Period (FY)
      2014 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Osaka University
  •  Dynamic analysis for living cell environment by 4D imagingPrincipal Investigator

    • Principal Investigator
      MATSUDA Hideo
    • Project Period (FY)
      2012 – 2014
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      System genome science
    • Research Institution
      Osaka University
  •  Development Mechanism and Physiological Roles of Brown Fat Regulating Energy Expenditure

    • Principal Investigator
      KAWADA Teruo
    • Project Period (FY)
      2010 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research (S)
    • Research Field
      Food science
    • Research Institution
      Kyoto University
  •  Development of Gene Regulatory Network Analysis Methods for Revealing Cell Differentiation ProcessesPrincipal Investigator

    • Principal Investigator
      MATSUDA Hideo
    • Project Period (FY)
      2010 – 2012
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      System genome science
    • Research Institution
      Osaka University
  •  データグリッドによる異分野科学データベース統合技術の開発Principal Investigator

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      2007 – 2008
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      Osaka University
  •  異分野科学データベースからの大量情報統合技術の開発Principal Investigator

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      2006
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      Osaka University
  •  Support for data analysis and sharing

    • Principal Investigator
      TAKAGI Toshihisa
    • Project Period (FY)
      2005 – 2009
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      The University of Tokyo
  •  Genome-level integration of gene functional information and its application to elucidation of gene systemsPrincipal Investigator

    • Principal Investigator
      MATSUDA Hideo
    • Project Period (FY)
      2003 – 2004
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      Osaka University
  •  Construction of Federated Genome Knowledgebases by Grid ComputingPrincipal Investigator

    • Principal Investigator
      MATSUDA Hideo
    • Project Period (FY)
      2003 – 2004
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      計算科学
    • Research Institution
      Osaka University
  •  ゲノムレベルでの遺伝子機能情報の統合化Principal Investigator

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      2001 – 2004
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      Osaka University
  •  Construction of Gene Interaction Network with Computational LifePrincipal Investigator

    • Principal Investigator
      MATSUDA Hideo
    • Project Period (FY)
      2001 – 2002
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Intelligent informatics
    • Research Institution
      Osaka University
  •  Knowledge Discovery from Genome Databases

    • Principal Investigator
      MORISHITA Shinichi
    • Project Period (FY)
      2000 – 2004
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      University of Tokyo
  •  Construction of Genetic Regulatory Network with Computational LifePrincipal Investigator

    • Principal Investigator
      MATSUDA Hideo
    • Project Period (FY)
      1999 – 2000
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Intelligent informatics
    • Research Institution
      Osaka University
  •  人工生命による分子進化のモデル化と遺伝子情報の統合解析Principal Investigator

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      1997 – 1998
    • Research Category
      Grant-in-Aid for Encouragement of Young Scientists (A)
    • Research Field
      Intelligent informatics
    • Research Institution
      Osaka University
  •  人工生命による分子進化のモデル化と遺伝子配列の機能解析Principal Investigator

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      1996
    • Research Category
      Grant-in-Aid for Encouragement of Young Scientists (A)
    • Research Field
      Intelligent informatics
    • Research Institution
      Osaka University
  •  Biological Knowledge Based on Genome Information

    • Principal Investigator
      KANEHISA Minoru
    • Project Period (FY)
      1996 – 2000
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas (A)
    • Research Institution
      KYOTO UNIVERSITY
  •  最尤法による分子進化の並列解析システムの開発Principal Investigator

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      1995
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Osaka University
  •  人工生命による分子進化のモデルと並列シミュレーションPrincipal Investigator

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      1995
    • Research Category
      Grant-in-Aid for Encouragement of Young Scientists (A)
    • Research Field
      Intelligent informatics
    • Research Institution
      Osaka University
  •  最尤法によるゲノム情報の並列多重解析システムの開発Principal Investigator

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      1994
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Kobe University
  •  人工生命による生体機構のモデル化と並列シミュレーションPrincipal Investigator

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      1994
    • Research Category
      Grant-in-Aid for Encouragement of Young Scientists (A)
    • Research Field
      Intelligent informatics
    • Research Institution
      Kobe University
  •  Multi-agent system description programming language system based on workstation cluster type parllel computer system

    • Principal Investigator
      KANEDA Yukio
    • Project Period (FY)
      1994 – 1995
    • Research Category
      Grant-in-Aid for General Scientific Research (C)
    • Research Field
      Intelligent informatics
    • Research Institution
      Kobe University
  •  データ並列論理 言語によるゲノム情報データベースシステムの開発Principal Investigator

    • Principal Investigator
      松田 秀雄
    • Project Period (FY)
      1993
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Kobe University
  •  論理プログラミングにおけるソフトウェア構成プロセスのモデル化に関する研究

    • Principal Investigator
      KANEDA Yukio
    • Project Period (FY)
      1992
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Research Institution
      Kobe University
  •  インテリジェント生産時点情報管理(POP)に関する研究

    • Principal Investigator
      藤井 進
    • Project Period (FY)
      1989 – 1990
    • Research Category
      Grant-in-Aid for General Scientific Research (C)
    • Research Field
      機械工作
    • Research Institution
      Kobe University
  •  Research on one dimensional processor array type data base machine

    • Principal Investigator
      KANEDA Yukio
    • Project Period (FY)
      1989 – 1990
    • Research Category
      Grant-in-Aid for General Scientific Research (C)
    • Research Field
      計算機工学
    • Research Institution
      Kobe University
  •  マイクロプロセッサの立体アレイによる3次元情報の高速処理に関する研究

    • Principal Investigator
      MAEKAWA Sadao
    • Project Period (FY)
      1986 – 1987
    • Research Category
      Grant-in-Aid for General Scientific Research (B)
    • Research Field
      電子通信系統工学
    • Research Institution
      Kobe University

All 2024 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2008 2007 2006 2005 2004 2003 2002 2001 Other

All Journal Article Presentation Patent

  • [Journal Article] Accurate Detection of Fusion Genes in Long-Read Transcriptome Datasets from Multiple Cancer Cell Lines2024

    • Author(s)
      Keigo Masuda、Yoshiaki Sota、Hideo Matsuda
    • Journal Title

      Proceedings of the 2024 14th International Conference on Bioscience, Biochemistry and Bioinformatics

      Volume: - Pages: 7-13

    • DOI

      10.1145/3640900.3640909

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K19827
  • [Journal Article] Detecting Fusion Genes in Long-Read Transcriptome Sequencing Data with FUGAREC2024

    • Author(s)
      Keigo Masuda、Yoshiaki Sota、Hideo Matsuda
    • Journal Title

      IPSJ Transactions on Bioinformatics

      Volume: 17 Issue: 0 Pages: 1-9

    • DOI

      10.2197/ipsjtbio.17.1

    • ISSN
      1882-6679
    • Language
      English
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K19827
  • [Journal Article] Pseudotime-based Deep Learning of Gene Regulatory Relationships from Single-Cell Expression Data2023

    • Author(s)
      Koki Nishi、Junko Yoshida、Shigeto Seno、Kyoji Horie、Hideo Matsuda
    • Journal Title

      Proceedings of the 2023 13th International Conference on Biomedical Engineering and Technology

      Volume: - Pages: 56-62

    • DOI

      10.1145/3620679.3620688

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21K19827
  • [Journal Article] A Cell Tracking Method for Dynamic Analysis of Immune Cells Based on Deep Learning2023

    • Author(s)
      Aya Watanabe,Kenji Fujimoto,Hironori Shigeta,Shigeto Seno,Yutaka Uchida,Masaru Ishii,Hideo Matsuda
    • Journal Title

      International Journal of Machine Learning

      Volume: 13 Issue: 2 Pages: 64-69

    • DOI

      10.18178/ijml.2023.13.2.1130

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K19827
  • [Journal Article] Inference of Cell-Cell Communication for Detecting Immune Disease-Associated Signaling Pathways using Single-Cell RNA-seq2022

    • Author(s)
      Akihiro Nomura,Hideo Matsuda
    • Journal Title

      Proceedings of the 2022 9th International Conference on Biomedical and Bioinformatics Engineering

      Volume: - Pages: 74-80

    • DOI

      10.1145/3574198.3574210

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21K19827
  • [Journal Article] A Novel Method for Fusion Gene Detection using Both End-Fragment Sequences of Long Reads2022

    • Author(s)
      Keigo Masuda,Yoshiaki Sota,Hideo Matsuda
    • Journal Title

      Proceedings of the 2022 9th International Conference on Biomedical and Bioinformatics Engineering

      Volume: - Pages: 88-92

    • DOI

      10.1145/3574198.3574212

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K19827
  • [Journal Article] A Novel Method for Gene Regulatory Network Inference with Pseudotime Data Using Information Criterion2022

    • Author(s)
      Shuhei Yao, Kaito Uemura, Shigeto Seno, Hideo Matsuda
    • Journal Title

      International Journal of Bioscience, Biochemistry and Bioinformatics

      Volume: 12

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H04124
  • [Journal Article] Detection of Biomarkers for Epithelial-Mesenchymal Transition with Single-Cell Trajectory Inference2022

    • Author(s)
      Murayama Kosho、Matsuda Hideo
    • Journal Title

      Frontiers in Bioscience-Landmark

      Volume: 27 Issue: 4 Pages: 127-127

    • DOI

      10.31083/j.fbl2704127

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-ORGANIZER-17H06391, KAKENHI-PUBLICLY-20H04947, KAKENHI-PROJECT-18H04124
  • [Journal Article] A Method for Detection of Markers for Epithelial-Mesenchymal Transition based on Single Cell Transcriptomic Data2022

    • Author(s)
      Kosho Murayama, Hideo Matsuda
    • Journal Title

      Proceedings of 12th International Conference on Bioscience, Biochemistry and Bioinformatics

      Volume: - Pages: 57-62

    • DOI

      10.1145/3510427.3510436

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K22894, KAKENHI-ORGANIZER-17H06391, KAKENHI-PUBLICLY-20H04947, KAKENHI-PROJECT-18H04124
  • [Journal Article] Identification of Lineage Markers for T Cell Immune Dysregulation in Sarcoidosis using Single-Cell RNA-seq2022

    • Author(s)
      Akihiro Nomura, Hideo Matsuda
    • Journal Title

      International Journal of Bioscience, Biochemistry and Bioinformatics

      Volume: 12

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K22894
  • [Journal Article] Detecting Lineage-Specific Marker Genes for Tumor Evolution Based on Single Cell Transcriptome2021

    • Author(s)
      Murayama Kosho、Graduate School of Information Science and Technology, Osaka University, Suita, Osaka, Japan、Matsuda Hideo
    • Journal Title

      International Journal of Bioscience, Biochemistry and Bioinformatics

      Volume: 11 Issue: 3 Pages: 50-57

    • DOI

      10.17706/ijbbb.2021.11.3.50-57

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-ORGANIZER-17H06391, KAKENHI-PUBLICLY-20H04947
  • [Journal Article] Detecting Lineage-specific Marker Genes for Tumor Evolution based on Single Cell Transcriptome2021

    • Author(s)
      Kosho Murayama, Hideo Matsuda
    • Journal Title

      International Journal of Bioscience, Biochemistry and Bioinformatics

      Volume: 11

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H04124
  • [Journal Article] A CNN-based cell tracking method for multi-slice intravital imaging data2021

    • Author(s)
      Fujimoto Kenji、Mizugaki Tsubasa、Rajkumar Utkrisht、Shigeta Hironori、Seno Shigeto、Uchida Yutaka、Ishii Masaru、Bafna Vineet、Matsuda Hideo
    • Journal Title

      Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics

      Volume: 35 Pages: 1-7

    • DOI

      10.1145/3459930.3469559

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-17H06391, KAKENHI-PUBLICLY-20H04947
  • [Journal Article] 炎症の進行過程解明のための一細胞トランスクリプトーム解析2020

    • Author(s)
      松田秀雄
    • Journal Title

      医学のあゆみ

      Volume: 275 Pages: 1085-1091

    • Data Source
      KAKENHI-PUBLICLY-20H04947
  • [Journal Article] Thrombomodulin induces anti-inflammatory effects by inhibiting the rolling adhesion of leukocytes in vivo.2020

    • Author(s)
      Nishizawa S, Kikuta J, Seno S, Kajiki M, Tsujita R, Mizuno H, Sudo T, Ao T, Matsuda H, Ishii M.
    • Journal Title

      J Pharmacol Sci.

      Volume: 143 Issue: 1 Pages: 17-22

    • DOI

      10.1016/j.jphs.2020.01.001

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K17906, KAKENHI-PUBLICLY-18H05035, KAKENHI-PROJECT-18K16114, KAKENHI-PROJECT-20K17378
  • [Journal Article] Long non-coding RNA 2310069B03Rik functions as a suppressor of Ucp1 expression under prolonged cold exposure in murine beige adipocytes2020

    • Author(s)
      Mari Iwase, Shoko Sakai, Shigeto Seno, Yu-Sheng Yeh, Tony Kuo, Haruya Takahashi, Wataru Nomura, Huei-Fen Jheng, Paul Horton, Naoki Osato, Hideo Matsuda, Kazuo Inoue, Teruo Kawada, Tsuyoshi Goto
    • Journal Title

      Bioscience, biotechnology, and biochemistry

      Volume: 84 Issue: 2 Pages: 305-313

    • DOI

      10.1080/09168451.2019.1677451

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K00387, KAKENHI-PROJECT-18H04124, KAKENHI-PROJECT-19H02910
  • [Journal Article] Improvement of detection performance of fusion genes from RNA-Seq data by clustering short reads2019

    • Author(s)
      Yoshiaki Sota, Shigeto Seno, Hironori Shigeta, Naoki Osato, Masafumi Shimoda, Shinzaburo Noguchi, Hideo Matsuda
    • Journal Title

      Journal of Bioinformatics and Computational Biology

      Volume: 印刷中

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H04124
  • [Journal Article] 生体蛍光観察動画像の深度を考慮した深層学習による細胞追跡精度の改善2019

    • Author(s)
      嶋田彩人, 瀬尾茂人, 繁田浩功, 間下以大, 内田穣, 石井優, 松田秀雄
    • Journal Title

      情報処理学会論文誌 数理モデル化と応用

      Volume: 印刷中

    • NAID

      170000150463

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-18H05035
  • [Journal Article] Direct cell-cell contact between mature osteoblasts and osteoclasts dynamically controls their functions in vivo2018

    • Author(s)
      Masayuki Furuya、Junichi Kikuta、Sayumi Fujimori、Shigeto Seno、et.al
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 300-300

    • DOI

      10.1038/s41467-017-02541-w

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00403, KAKENHI-PROJECT-17K11005, KAKENHI-PROJECT-16K12525, KAKENHI-PROJECT-15H05671, KAKENHI-PROJECT-16H02619
  • [Journal Article] The dipeptidyl peptidase-4 (DPP-4) inhibitor teneligliptin enhances brown adipose tissue function, thereby preventing obesity in mice2018

    • Author(s)
      Takeda Kenichiro、Sawazaki Honami、Takahashi Haruya、Yeh Yu-Sheng、Jheng Huei-Fen、Nomura Wataru、Ara Takeshi、Takahashi Nobuyuki、Seno Shigeto、Osato Naoki、Matsuda Hideo、Kawada Teruo、Goto Tsuyoshi
    • Journal Title

      FEBS Open Bio

      Volume: 8 Issue: 11 Pages: 1782-1793

    • DOI

      10.1002/2211-5463.12498

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02551, KAKENHI-PROJECT-15K00403, KAKENHI-PROJECT-16K12525
  • [Journal Article] The hepatokine FGF21 is crucial for peroxisome proliferator-activated receptor-α agonist-induced amelioration of metabolic disorders in obese mice2017

    • Author(s)
      Tsuyoshi Goto、Mariko Hirata、Yumeko Aoki、Mari Iwase、Haruya Takahashi、Minji Kim、Yongjia Li、Huei-Fen Jheng、Wataru Nomura、Nobuyuki Takahashi、Chu-Sook Kim、Rina Yu、Shigeto Seno、et.al
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 292 Issue: 22 Pages: 9175-9190

    • DOI

      10.1074/jbc.m116.767590

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00403, KAKENHI-PROJECT-16K07734, KAKENHI-PROJECT-26280106
  • [Journal Article] Bone marrow cavity segmentation using graph-cuts with wavelet-based texture feature2017

    • Author(s)
      Shigeta Hironori、Mashita Tomohiro、Junichi Kikuta、Shigeto Seno、et.al
    • Journal Title

      Journal of Bioinformatics and Computational Biology

      Volume: 15 Issue: 05 Pages: 1740004-1740004

    • DOI

      10.1142/s0219720017400042

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K00403, KAKENHI-PROJECT-16K12525
  • [Journal Article] Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution2016

    • Author(s)
      Yoichi Takenaka, Shigeto Seno, Hideo Matsuda
    • Journal Title

      J. Bioinformatics and Computational Biology

      Volume: 13 Issue: 05 Pages: 1543002-1543020

    • DOI

      10.1142/s0219720015430027

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-15K00402, KAKENHI-PROJECT-24700294, KAKENHI-PROJECT-26280106
  • [Journal Article] Proinflammatory cytokine interleukin-1β suppresses cold-induced thermogenesis in adipocytes2016

    • Author(s)
      Tsuyoshi Goto, Supaporn Naknukool, Rieko Yoshitake, Yuki Hanafusa, Soshi Tokiwa, Yongjia Li, Tomoya Sakamoto, Takahiro Nitta, Minji Kim, Nobuyuki Takahashi, Rina Yu, Hiromi Daiyasu, Shigeto Seno, Hideo Matsuda, Teruo Kawada
    • Journal Title

      Cytokine

      Volume: 77 Pages: 107-114

    • DOI

      10.1016/j.cyto.2015.11.001

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24700294, KAKENHI-PROJECT-26280106
  • [Journal Article] グラフカットを用いた骨髄腔画像の領域分割2015

    • Author(s)
      宇佐見 潤, 繁田 浩功, 間下 以大, 黒田 嘉宏, 菊田 順一, 瀬尾 茂人, 石井 優, 松田 秀雄, 竹村 治雄
    • Journal Title

      情報処理学会論文誌 数理モデル化と応用

      Volume: 8 Pages: 18-27

    • NAID

      110009886640

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24651229
  • [Journal Article] Metagenome fragment classification based on multiple motif-occurrence profiles2014

    • Author(s)
      Naoki Matsushita, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      PeerJ

      Volume: 2: e559 Pages: 1-13

    • DOI

      10.7717/peerj.559

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-24650155, KAKENHI-PROJECT-24700294, KAKENHI-PROJECT-26280106
  • [Journal Article] 混合正規分布モデルを用いた経時観測蛍光画像からの細胞核の検出と追跡手法2013

    • Author(s)
      瀬尾茂人, 間下以大, 前田栄, 竹中要一, 石井優, 松田秀雄
    • Journal Title

      情報処理学会論文誌 数理モデル化と応用

      Volume: 6(3) Pages: 140-150

    • NAID

      110009550153

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24651229
  • [Journal Article] An estimation method for a cellular-state-specific gene regulatory network along tree-structured gene expression profiles2013

    • Author(s)
      Ryo Araki, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      Gene

      Volume: Vol.518 Issue: 1 Pages: 17-25

    • DOI

      10.1016/j.gene.2012.11.090

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310125, KAKENHI-PROJECT-22680023, KAKENHI-PROJECT-24650155, KAKENHI-PROJECT-24700294
  • [Journal Article] A Method for Isoform Prediction from RNA-Seq Data by Iterative Mapping2012

    • Author(s)
      Tomoshige Ohno, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      IPSJ Transactions on Bioinformatics

      Volume: 5 Issue: 0 Pages: 27-33

    • DOI

      10.2197/ipsjtbio.5.27

    • NAID

      130002124175

    • ISSN
      1882-6679
    • Language
      English
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Journal Article] An estimation method for inference of gene regulatory network using Bayesian network with uniting of partial problems2012

    • Author(s)
      Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      BMC Genomics

      Volume: Vol.13 Issue: Suppl 1 Pages: S12-S12

    • DOI

      10.1186/1471-2164-13-s1-s12

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310125, KAKENHI-PROJECT-22680023
  • [Journal Article] 細胞分化クロストークのモデル化と細胞分化クロストーク遺伝子の推定手法2011

    • Author(s)
      吉澤陽志, 瀬尾茂人, 竹中要一, 松田秀雄
    • Journal Title

      情報処理学会論文誌 数理モデル化と応用

      Volume: 4巻 Pages: 59-68

    • NAID

      40019257169

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Journal Article] Inference of S-system models of gene regulatory networks using immune algorithm2011

    • Author(s)
      Tomoyoshi Nakayama, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Journal Title

      Journal of Bioinformatics and Computational Biology

      Volume: Vol.9 Issue: supp01 Pages: 75-86

    • DOI

      10.1142/s0219720011005768

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Journal Article] Gene expression profile prospectively predicts peritoneal relapse after curative surgery of gastric cancer2010

    • Author(s)
      A.Takeno, I.Takemasa, S.Seno, M.Yamasaki, M.Motoori, H.Miyata, K.Nakajima, S.Takiguchi, Y.Fujiwara, T.Nishida, T.Okayama, K.Matsubara, Y.Takenaka, H.Matsuda, M.Monden, M.Mori, Y.Doki
    • Journal Title

      Annals of Surgical Oncology

      Volume: Vol.17 Pages: 1033-1042

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Journal Article] A combination method of the tanimoto coefficient and proximity measure of random forest for compound activity prediction2008

    • Author(s)
      Kawamura, G. (Matsuda, H.)
    • Journal Title

      IPSJ Transactions on Bioinformatics 49(SIG5)

      Pages: 46-57

    • NAID

      110006684909

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17020001
  • [Journal Article] A Distributed-Processing System for Accelerating Biological Research using Data-Staging2008

    • Author(s)
      Y., Kido・S., Seno・S., Date・Y., Takenaka・H., Matsuda
    • Journal Title

      IPSJ Transactions on Bioinformatics (印刷中)

    • NAID

      110006684910

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Journal Article] A Combination Method of the Tanimoto Coefficient and Proximity Measure of Random Forest for Compound Activity Prediction2008

    • Author(s)
      G., Kawamura・S., Seno・Y., Takenaka・H., Matsuda
    • Journal Title

      IPSJ Transactions on Bioinformatics (印刷中)

    • NAID

      110006824830

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Journal Article] A distributed-processing system for accelerating biological research using data-staging2008

    • Author(s)
      Kido, Y. (Matsuda, H.)
    • Journal Title

      IPSJ Transactions on Bioinformatics 49(SIG5)

      Pages: 58-64

    • NAID

      110006684910

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17020001
  • [Journal Article] Compound-Transporter Interaction Studies using Canonical Correlation Analysis2007

    • Author(s)
      M., Kitajima・Y., Minowa・H., Matsuda・Y., Okuno
    • Journal Title

      Chem-Bio Informatics Journal 7

      Pages: 24-34

    • NAID

      130004138177

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Journal Article] Retrieving functionally similar bioinformatics workflows using TF-IDF filtering2007

    • Author(s)
      Seo, J., (Matsuda, H.)
    • Journal Title

      IPSJ Transactions on Bioinformatics 48 (SIG5)

      Pages: 20-29

    • NAID

      110006242959

    • Data Source
      KAKENHI-PROJECT-17020001
  • [Journal Article] Inference of Transcriptional Regulatory Networks using CAGE Transcriptome Dataset of Mus musculus2006

    • Author(s)
      K.Taki, Y.Takenaka, H.Matsuda
    • Journal Title

      Proceedings of World Congress on Medical Physics and Biomedical Engineering (CD-ROM)

    • Data Source
      KAKENHI-PROJECT-18049053
  • [Journal Article] Extraction of Functionally Similar Bioinformatics Workflows2006

    • Author(s)
      J.Seo, S.Seno, Y.Takenaka, H.Matsuda
    • Journal Title

      Proceedings of International Workshop on Dstibute Applications, Web Services, Tools and GRID Infrastructures for Bioinformatics 6

      Pages: 70-74

    • Data Source
      KAKENHI-PROJECT-18049053
  • [Journal Article] 遺伝子発現プロファイルを用いた遺伝子制御ネットワーク推定のためのバイクラスタリングの応用2006

    • Author(s)
      瀧浩平, 竹中要一, 松田秀雄
    • Journal Title

      情報処理学会論文誌 : 数理モデル化と応用 47・15

      Pages: 118-128

    • Data Source
      KAKENHI-PROJECT-18049053
  • [Journal Article] A Method for Exploring Tissue-Specific Functions based on Information Content of Gene Ontology Terms using CAGE Tags2006

    • Author(s)
      S.Maekawa, A.Matsumoto, Y.Takenaka, H.Matsuda
    • Journal Title

      Proceedings of World Congress on Medical Physics and Biomedical Engineering (CD-ROM)

    • Data Source
      KAKENHI-PROJECT-18049053
  • [Journal Article] An OGSA-based Integration of Life Science Resources2005

    • Author(s)
      T.Kosaka, Y.Tohsato, S.Date, H.Matsuda, S.Shimojo
    • Journal Title

      Methods of Information in Medicine 44-2 (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15607013
  • [Journal Article] Heterogeneous Database Federation using Grid Technology for Drug Discovery Process2005

    • Author(s)
      Y.Tohsato, T.Kosaka, S.Date, S.Shimojo, H.Matsuda
    • Journal Title

      Lecture Notes in Bioinformatics 3370

      Pages: 43-52

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15607013
  • [Journal Article] An OGSA-based Integration of Life Science Resources2005

    • Author(s)
      T.Kosaka, Y.Tohsato, S.Date, H.Matsuda, S.Shimojo
    • Journal Title

      Methods of Information in Medicine 44・2(in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15607013
  • [Journal Article] Architecture of a Grid-Enabled Research Platform with Location-Transparency for Bioinformatics2005

    • Author(s)
      Y.Tohsato, T.Kosaka, S.Date, S.Shimojo, H.Matsuda
    • Journal Title

      Lecture Notes in Bioinformatics 3370

      Pages: 43-52

    • NAID

      130003997344

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15607013
  • [Journal Article] Graph-based Clustering for Finding Distant Relationships in a Large Set of Protein Sequences2004

    • Author(s)
      Kawaji, H., Takenaka, Y., Matsuda, H.
    • Journal Title

      Bioinformatics 20(2)

      Pages: 243-252

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15011229
  • [Journal Article] Biased biological functions of horizontally transferred genes in prokarvotic genomes2004

    • Author(s)
      Y.Nakamura, T.I toh, H.Matsuda, T.Goiobori.
    • Journal Title

      Nature Genetics 36・7

      Pages: 760-766

    • Data Source
      KAKENHI-PROJECT-15011229
  • [Journal Article] Architecture of a Grid-Enabled Research Platform with Location-Transparency for Bioinformatics2004

    • Author(s)
      Y.Kido S.Date S.Takeda S.Hatano J.Ma S.Shimoio H.Matsuda
    • Journal Title

      Genome Informatics l5・2

      Pages: 3-12

    • NAID

      130003997344

    • Data Source
      KAKENHI-PROJECT-15011229
  • [Journal Article] A Method for Clustering Expression Data Based on Graph Structure2004

    • Author(s)
      S.Seno, R.Teramoto, Y.Takenaka, H.Matsuda
    • Journal Title

      Genome Informatics 15-2

      Pages: 151-160

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15607013
  • [Journal Article] 遺伝子の機能分類を利用した遺伝子制御ネットワーク推定手法2004

    • Author(s)
      瀧浩平, 寺本礼仁, 竹中要一, 松田秀雄
    • Journal Title

      情報科学技術レターズ 3

      Pages: 23-24

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15607013
  • [Journal Article] MaXML : Mouse Annotation XML2004

    • Author(s)
      Kasukawa, T., Bono, H., Hayashizaki, Y., Okazaki, Y., Matsuda, H.
    • Journal Title

      In Silico Biology 4(3)

      Pages: 7-15

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15011229
  • [Journal Article] Architecture of a Grid-Enabled Research Platform with Location-Transparency for Bioinformatics2004

    • Author(s)
      Y.Kido, S.Date, S.Takeda, S.Hatano, J.Ma, S.Shimojo, H.Matsuda
    • Journal Title

      Genome Informatics 15-2

      Pages: 3-12

    • NAID

      130003997344

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15607013
  • [Journal Article] Development of a database system for drug discovery by employing grid technology2004

    • Author(s)
      K.Taki, R.Teramoto, Y.Takenaka, H.Matsuda
    • Journal Title

      Information Technology Letters 3

      Pages: 365-369

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15607013
  • [Journal Article] Biased Biological Functions of Horizontally Transferred Genes in Prokaryotic Genomes2004

    • Author(s)
      Nakamura, Y., Itoh, T., Matsuda, H., Gojobori, T.
    • Journal Title

      Nature Genetics 36(7)

      Pages: 760-766

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15011229
  • [Journal Article] A Method for Clustering Expression Data Based on Graph Structure2004

    • Author(s)
      S.Seno R.Teramoto Y.Takenaka, H.Matsuda
    • Journal Title

      Genome Informatics 15・2

      Pages: 151-160

    • Data Source
      KAKENHI-PROJECT-15011229
  • [Journal Article] Biased biological functions of horizontally transferred genes in prokaryotic genomes2004

    • Author(s)
      Y.Nakamura, T.Itoh, H.Matsuda, T.Gojobori
    • Journal Title

      Nature Genetics 36・7

      Pages: 760-766

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15607013
  • [Journal Article] 遺伝子の機能分類を利用した遺伝子制御ネットワーク推定手法2004

    • Author(s)
      瀧浩平, 寺本礼仁, 竹中要一, 松田秀雄
    • Journal Title

      情報科学技術レターズ 3

      Pages: 23-24

    • Data Source
      KAKENHI-PROJECT-15011229
  • [Journal Article] Biased biological functions of horizontally transferred genes in prokaryotic genomes2004

    • Author(s)
      Y.Nakamura, T.Itoh, H.Matsuda, T.Gojobori
    • Journal Title

      Nature Genetics 36-7

      Pages: 760-766

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15607013
  • [Journal Article] Architecture of a Grid-Enabled Research Platform with Location-Transparency for Bioinformatics2004

    • Author(s)
      Y.Kido, S.Date, S.Takeda, S.Hatano, J.Ma, S.Shimojo, H.Matsuda
    • Journal Title

      Genome Informatics 15・2

      Pages: 3-12

    • NAID

      130003997344

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15607013
  • [Journal Article] Inference method of gene regulatory networks using gene functional classification2004

    • Author(s)
      Taki, K., Teramoto, R., Takenaka, Y., Matsuda, H.
    • Journal Title

      Information Technology Letters 3

      Pages: 23-24

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15011229
  • [Journal Article] A Method for Clustering Expression Data Based on Graph Structure2004

    • Author(s)
      S.Seno, R.Teramoto, Y.Takenaka, H.Matsuda
    • Journal Title

      Genome Informatics 15・2

      Pages: 151-160

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15607013
  • [Journal Article] A Clustering Method for Comparative Analysis between Genomes and Pathways2003

    • Author(s)
      Miyake, S., Tohsato, Y., Takenaka, Y., Matsuda, H.
    • Journal Title

      8th International Conference on Database Systems for Advanced Applications DASFAA2003

      Pages: 327-334

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15011229
  • [Journal Article] Mouse Proteome Analysis2003

    • Author(s)
      Kanapin, A., Batalov, S., Davis, M.J., Gough, J., Grimmond, S., Kawaji, H., Magrane, M., Matsuda, H., Schoenbach, C., Teasdale, R.D., RIKEN GER Group, GSL Members, Yuan, Z.
    • Journal Title

      Genome Research 13(6b)

      Pages: 1335-1344

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15011229
  • [Journal Article] Exploration of Novel Motifs derived from Mouse cDNA sequences2002

    • Author(s)
      Kawaji, H., Schoenbach, C., Matsuo, Y., Kawai, J., Okazaki, Y., Hayashizaki, Y., Matsuda, H.
    • Journal Title

      Genome Research 12(3)

      Pages: 367-378

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15011229
  • [Journal Article] An Application of a Pathway Alignment Method to the Analysis of Metabolic Pathways, Research Communications in Biochemistry2001

    • Author(s)
      Tohsato, Y., Matsuda, H, Hashimoto, A.
    • Journal Title

      Cell and Molecular Biology 15(3/4)

      Pages: 179-191

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15011229
  • [Journal Article] Retrieving Functionally Similar Bioinformatics Workflows using TF-IDF Filtering

    • Author(s)
      J.Seo, S.Seno, Y.Takenaka, H.Matsuda
    • Journal Title

      IPSJ Transactions on Bioinformatics (印刷中)

    • NAID

      110006595438

    • Data Source
      KAKENHI-PROJECT-18049053
  • [Patent] 評価方法、評価装置およびプログラム2018

    • Inventor(s)
      石井優、菊田順一、松田秀雄、瀬尾茂人
    • Industrial Property Rights Holder
      石井優、菊田順一、松田秀雄、瀬尾茂人
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2018-007571
    • Filing Date
      2018
    • Data Source
      KAKENHI-PROJECT-16K12525
  • [Presentation] A clustering method based on cell type identification for single-cell RNA-seq data2022

    • Author(s)
      Sohta Nishida,Junko Yoshida,Shigeto Seno,Kyoji Horie,Hideo Matsuda
    • Organizer
      The Annual International Conference on Intelligent Systems for Molecular Biology (ISMB2022)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-21K19827
  • [Presentation] 炎症刺激に対する免疫細胞の動態解析のための深層学習に基づく細胞追跡手法2022

    • Author(s)
      渡部 綾,ブライソン ジェームス, 藤本 健二, 繁田 浩功, 瀬尾 茂人, 松田 秀雄
    • Organizer
      情報処理学会 第137回数理モデル化と問題解決研究発表会
    • Data Source
      KAKENHI-PUBLICLY-20H04947
  • [Presentation] A method for classification of cell migration types based on cell-tracking results from live-cell imaging2021

    • Author(s)
      Aya Watanabe, Tsubasa Mizugaki, Hironori Shigeta, Shigeto Seno, Hideo Matsuda
    • Organizer
      29th Conference on Intelligent Systems for Molecular Biology and 20th European Conference on Computational Biology (ISMB/ECCB)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-20H04947
  • [Presentation] Cell trajectory inference for mouse stem cell differentiation using cell type information from single-cell RNA-seq data2021

    • Author(s)
      Yutaka Izeki, Mona Mizutome, Junko Yoshida, Shigeto Seno, Kyoji Horie, Hideo Matsuda
    • Organizer
      29th Conference on Intelligent Systems for Molecular Biology and 20th European Conference on Computational Biology (ISMB/ECCB)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K22894
  • [Presentation] Cell trajectory inference for revealing differentiation process of mouse stem cells using single cell RNA-seq data2020

    • Author(s)
      Takumi Adachi, Junko Yoshida, Shigeto Seno, Kyoji Horie, Hideo Matsuda
    • Organizer
      28th Conference on Intelligent Systems for Molecular Biology (ISMB)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K22894
  • [Presentation] A method for tracking cell migration in vivo based on deep learning with target detection2020

    • Author(s)
      Tsubasa Mizugaki, Utkrisht Rajkumar, Kenji Fujimoto, Hironori Shigeta, Shigeto Seno, Yutaka Uchida, Masaru Ishii, Vineet Bafna, Hideo Matsuda
    • Organizer
      28th Conference on Intelligent Systems for Molecular Biology (ISMB)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-20H04947
  • [Presentation] Single-cell transcriptome analysis for elucidating cell dynamics2019

    • Author(s)
      Naoki Osato, Hironori Shigeta, Shigeto Seno, Yutaka Uchida, Masaru Ishii, Hideo Matsuda
    • Organizer
      Single cell biology meets diagnostics - 12th International workshop on approaches to single cell analysis
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H04124
  • [Presentation] A method for inferring gene regulatory networks based on pseudo time-series gene expression profiles from single-cell RNA-seq data2019

    • Author(s)
      Kaito Uemura, Naoki Osato, Hironori Shigeta, Shigeto Seno, Hideo Matsuda
    • Organizer
      27th Conference on Intelligent Systems for Molecular Biology and 18th European Conference on Computational Biology (ISMB/ECCB)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H04124
  • [Presentation] Single-cell RNA-seq analysis combined with live cell imaging on inflammatory response2019

    • Author(s)
      Hideo Matsuda, Naoki Osato, Yutaka Uchida, Hironori Shigeta, Shigeto Seno, Masaru Ishii
    • Organizer
      27th Conference on Intelligent Systems for Molecular Biology and 18th European Conference on Computational Biology (ISMB/ECCB)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-18H05035
  • [Presentation] A study on novel estimation method of cell differentiation lineage by single cell trajectory inference2019

    • Author(s)
      Shuhei Yao, Hironori Shigeta, Shigeto Seno, Hideo Matsuda
    • Organizer
      27th Conference on Intelligent Systems for Molecular Biology and 18th European Conference on Computational Biology (ISMB/ECCB)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K22894
  • [Presentation] Single-cell transcriptome analysis of mouse leukocytes in inflammatory stimulation2019

    • Author(s)
      Naoki Osato, Hironori Shigeta, Shigeto Seno, Yutaka Uchida, Junichi Kikuta, Masaru Ishii, Hideo Matsuda
    • Organizer
      IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-18H05035
  • [Presentation] Analyzing leukocyte migration trajectories by deformable image matching2019

    • Author(s)
      Hironori Shigeta, Shigeto Seno, Shino Nishizawa, Yutaka Uchida, Junichi Kikuta, Masaru Ishii, Hideo Matsuda
    • Organizer
      19th International Conference on IEEE Bioinformatics and BioEngineering (BIBE)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-18H05035
  • [Presentation] Detection of fusion genes from human breast cancer cell-line RNA-Seq data using shifted short read clustering2018

    • Author(s)
      Yoshiaki Sota, Shigeto Seno, Hironori Shigeta, Naoki Osato, Masafumi Shimoda, Shinzaburo Noguchi, Hideo Matsuda
    • Organizer
      IEEE 18th International Conference on Bioinformatics and Bioengineering (BIBE 2018)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H04124
  • [Presentation] Asymmetric integration of single-cell transcriptomic data using latent Dirichlet allocation and procrustes analysis2018

    • Author(s)
      Mitsuhisa Eto, Wataru Hirota, Shigeto Seno, Hideo Matsuda
    • Organizer
      The 9th Integrative Data Analysis in Systems Biology (IDEAS 2018)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-18H05035
  • [Presentation] 細胞画像のセグメンテーション精度向上のための画像類推を用いた学習データ拡張2018

    • Author(s)
      赤沢秀樹, 渡邊誓旅, 繁田浩功, 間下以大, 瀬尾茂人, 松田秀雄
    • Organizer
      第21回画像の認識・理解シンポジウム MIRU2018
    • Data Source
      KAKENHI-PROJECT-16K12525
  • [Presentation] Clustering of cells for single cell analysis using latent Dirichlet allocation2017

    • Author(s)
      Mitsuhiro Eto, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      International Conference on Intelligent Systems for Molecular Biology and European Conference on Computational Biology (ISMB/ECCB 2017)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26280106
  • [Presentation] 細胞個体の移動傾向の違いを考慮したグローバルデータアソシエーションを用いた細胞追跡手法2017

    • Author(s)
      伊藤澄美, 瀬尾茂人, 繁田浩功, 菊田順一, 竹中要一, 石井優, 松田秀雄
    • Organizer
      情報処理学会 第112回数理モデル化と問題解決研究発表会
    • Place of Presentation
      清温荘 (岩手県)
    • Year and Date
      2017-02-27
    • Data Source
      KAKENHI-PROJECT-16K12525
  • [Presentation] 蛍光顕微鏡画像のためのグラフカットによる毛細血管の抽出手法2017

    • Author(s)
      嶋田彩人, 繁田浩功, 瀬尾茂人, 池田わたる, 竹中要一, 松田秀雄
    • Organizer
      第16回画像の認識・理解シンポジウム MIRU2017
    • Data Source
      KAKENHI-PROJECT-16K12525
  • [Presentation] 畳み込みニューラルネットワークを用いた脂肪細胞セグメンテーションにおける分割精度改善手法の提案2017

    • Author(s)
      薮崎隼人, 瀬尾茂人, 竹中要一, 後藤剛, 河田照雄, 松田秀雄
    • Organizer
      情報処理学会 第112回数理モデル化と問題解決研究発表会
    • Place of Presentation
      清温荘 (岩手県)
    • Year and Date
      2017-02-27
    • Data Source
      KAKENHI-PROJECT-26280106
  • [Presentation] 一細胞解析のための潜在的ディリクレ配分法を用いた遺伝子群の機能予測手法2017

    • Author(s)
      江藤充宏, 瀬尾茂人, 竹中要一, 松田秀雄
    • Organizer
      NGS現場の会 第五回研究会
    • Data Source
      KAKENHI-PROJECT-26280106
  • [Presentation] A method of bioimage analysis for spatial pattern of cellular interaction and intercalation2017

    • Author(s)
      Shigeto Seno, Masayuki Furuya, Junichi Kikuta, Masaru Ishii, Hideo Matsuda
    • Organizer
      International Conference on Intelligent Systems for Molecular Biology and European Conference on Computational Biology (ISMB/ECCB 2017)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K12525
  • [Presentation] 1細胞RNA-seqの特性を考慮した遺伝子発現差解析手法の検討2017

    • Author(s)
      大里直樹, 繁田浩功, 瀬尾茂人, 松田秀雄
    • Organizer
      NGS現場の会 第五回研究会
    • Data Source
      KAKENHI-PROJECT-26280106
  • [Presentation] Analyzing cell migration dynamics from intravital imaging by deformable image matching2017

    • Author(s)
      Hideo Matsuda, Hironori Shigeta, Shigeto Seno, Junichi Kikuta, Masaru Ishii
    • Organizer
      International Conference on Intelligent Systems for Molecular Biology and European Conference on Computational Biology (ISMB/ECCB 2017)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K12525
  • [Presentation] A bone marrow cavity segmentation method using wavelet-based texture feature2016

    • Author(s)
      Hironori Shigeta, Tomohiro Mashita, Junichi Kikuta, Shigeto Seno, Haruo Takemura, Hideo Matsuda, Masaru Ishii
    • Organizer
      International Conference on Pattern Recognition (ICPR2016)
    • Place of Presentation
      Cancun Center, Cancun, Mexico
    • Year and Date
      2016-12-04
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K12525
  • [Presentation] ウェーブレット特徴量を用いた生体骨組織の骨髄腔の領域分割手法2016

    • Author(s)
      繁田浩功, 間下以大, 菊田順一, 瀬尾茂人, 竹村治雄, 松田秀雄, 石井優
    • Organizer
      バイオイメージ・インフォマティクスワークショップ 2016
    • Place of Presentation
      大阪大学銀杏会館(大阪府)
    • Year and Date
      2016-06-22
    • Data Source
      KAKENHI-PROJECT-16K12525
  • [Presentation] An accurate estimation method for expression profiles of novel transcripts from RNA-Seq data2016

    • Author(s)
      F. Iwasaki, S. Seno, Y. Takenaka, H. Matsuda
    • Organizer
      International Conference on Intelligent Systems for Molecular Biology (ISMB2016)
    • Place of Presentation
      Swan and Dolphin Hotel, Orlando, USA
    • Year and Date
      2016-07-08
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26280106
  • [Presentation] 模様特徴量とグラフカットを利用した生体骨組織の骨髄腔の領域分割2016

    • Author(s)
      繁田浩功,間下以大,菊田順一,瀬尾茂人,石井優,松田秀雄
    • Organizer
      第5回生命医薬情報学連合大会
    • Place of Presentation
      東京国際交流館プラザ平成(東京都)
    • Year and Date
      2016-09-29
    • Data Source
      KAKENHI-PROJECT-16K12525
  • [Presentation] Bayesian network inference from gene expression profiles with a small number of samples2016

    • Author(s)
      K. Saito, S. Seno, Y. Takenaka, H. Matsuda
    • Organizer
      International Conference on Research in Computational Molecular Biology (RECOMB 2016)
    • Place of Presentation
      UCLA, Los Angeles, USA
    • Year and Date
      2016-04-17
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26280106
  • [Presentation] A method for reducing false positives of target genes of microRNAs by combining two prediction tools2016

    • Author(s)
      H. Matsuda, J. Tsuda, S. Seno, Y. Takenaka
    • Organizer
      International Conference on Intelligent Systems for Molecular Biology (ISMB2016)
    • Place of Presentation
      Swan and Dolphin Hotel, Orlando, USA
    • Year and Date
      2016-07-08
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26280106
  • [Presentation] Dynamic analysis of gene regulations using leaving-one-out expression profile2016

    • Author(s)
      Y. Takenaka, S. Seno, H. Matsuda
    • Organizer
      International Conference on Research in Computational Molecular Biology (RECOMB 2016)
    • Place of Presentation
      UCLA, Los Angeles, USA
    • Year and Date
      2016-04-17
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26280106
  • [Presentation] 小サンプル数データに対するベイジアンネットワークのスコアベース構造学習改善手法2016

    • Author(s)
      齋藤和正, 瀬尾茂人, 竹中要一, 松田秀雄
    • Organizer
      情報処理学会第45回バイオ情報学研究発表会
    • Place of Presentation
      北陸先端科学技術大学院大学(石川県)
    • Year and Date
      2016-03-18
    • Data Source
      KAKENHI-PROJECT-26280106
  • [Presentation] オプティカルフローとウェーブレット解析を用いた白血球の動態の解析手法2016

    • Author(s)
      松原周平, 瀬尾茂人, 西澤志乃, 菊田順一, 竹中要一, 石井優, 松田秀雄
    • Organizer
      バイオイメージ・インフォマティクスワークショップ 2016
    • Place of Presentation
      大阪大学銀杏会館(大阪府)
    • Year and Date
      2016-06-22
    • Data Source
      KAKENHI-PROJECT-16K12525
  • [Presentation] 脂肪細胞の遺伝子解析:白色脂肪細胞の寒冷刺激による褐色化の機構解明2014

    • Author(s)
      松田秀雄
    • Organizer
      第3回生命医薬情報学連合大会
    • Place of Presentation
      仙台国際センター(宮城県)
    • Year and Date
      2014-10-04
    • Invited
    • Data Source
      KAKENHI-PROJECT-26280106
  • [Presentation] 大域データ対応付けの反復実行による細胞追跡精度の改善手法2014

    • Author(s)
      藏重昂平, 福田浩二郎, 瀬尾茂人, 間下以大, 竹中要一, 松田秀雄
    • Organizer
      情報処理学会 第39回バイオ情報学研究会
    • Place of Presentation
      大阪大学情報科学研究科(大阪府)
    • Year and Date
      2014-09-19
    • Data Source
      KAKENHI-PROJECT-24651229
  • [Presentation] ゲノム情報からのビッグデータの解析2014

    • Author(s)
      松田秀雄
    • Organizer
      情報処理学会 組込みシステムシンポジウム
    • Place of Presentation
      国立オリンピック記念青少年センター(東京都)
    • Year and Date
      2014-10-23
    • Invited
    • Data Source
      KAKENHI-PROJECT-26280106
  • [Presentation] ベイジアンネットワークによる遺伝子制御ネットワーク推定結果の反復構築のための計算速度向上手法2014

    • Author(s)
      津田絢子, 瀬尾茂人, 竹中要一, 松田秀雄
    • Organizer
      情報処理学会 第38回バイオ情報学研究会
    • Place of Presentation
      沖縄科学技術大学院大学(沖縄県)
    • Year and Date
      2014-06-26
    • Data Source
      KAKENHI-PROJECT-26280106
  • [Presentation] IL-1βが白色脂肪細胞におけるUCP1発現に及ぼす影響2014

    • Author(s)
      吉竹 里依子、Naknukool Supaporn、花房 祐希、坂本 智弥、後藤  剛、高橋 信之、大安 裕美、瀬尾 茂人、松田 秀雄、河田 照雄
    • Organizer
      第35回日本肥満学会
    • Place of Presentation
      宮崎市 シーガイアコンベンションセンター
    • Year and Date
      2014-10-24
    • Data Source
      KAKENHI-PROJECT-22228001
  • [Presentation] ライフサイエンスにおけるビッグデータの解析2014

    • Author(s)
      松田秀雄
    • Organizer
      グリッド協議会神戸セミナー
    • Place of Presentation
      理化学研究所 計算科学研究機構(兵庫県)
    • Year and Date
      2014-09-12
    • Invited
    • Data Source
      KAKENHI-PROJECT-26280106
  • [Presentation] タイムラプスイメージングによる細胞周期観測画像の時空間解析2014

    • Author(s)
      福田浩二郎, 瀬尾茂人, 間下以大, 竹中要一, 松田秀雄
    • Organizer
      バイオイメージ・インフォマティクスワークショップ
    • Place of Presentation
      岡崎コンファレンスセンター(愛知県)
    • Year and Date
      2014-06-09
    • Data Source
      KAKENHI-PROJECT-24651229
  • [Presentation] 経時観測蛍光画像からのモーションヒストリーイメージを用いた細胞分裂の検出方法2013

    • Author(s)
      福田浩二郎, 瀬尾茂人, 間下以大, 前田栄, 竹中要一, 石井優, 松田秀雄
    • Organizer
      画像の認識・理解シンポジウムMIRU2013
    • Place of Presentation
      国立情報学研究所, 東京
    • Data Source
      KAKENHI-PROJECT-24651229
  • [Presentation] Global Data Associationによる経時観察画像における破骨前駆細胞の自動追跡手法2013

    • Author(s)
      尾野貴広, 瀬尾茂人, 間下以大, 竹中要一, 石井優, 松田秀雄
    • Organizer
      画像の認識・理解シンポジウムMIRU2013
    • Place of Presentation
      国立情報学研究所, 東京
    • Data Source
      KAKENHI-PROJECT-24651229
  • [Presentation] スパコンによる遺伝子ネットワーク解析2012

    • Author(s)
      松田秀雄
    • Organizer
      電子情報通信学会2012年総合大会
    • Place of Presentation
      岡山大学(岡山県)
    • Year and Date
      2012-03-20
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Large-Scale Gene Regulatory Network Analysis for Adipocyte Differentiation on High-Performance Computer2012

    • Author(s)
      Hideo Matsuda
    • Organizer
      The 23rd International Conference on Genome Informatics (GIW2012)
    • Place of Presentation
      National Cheng Kung University, Tainan, Taiwan
    • Year and Date
      2012-12-12
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Estimate Dynamic Gene Regulatory Networks in Adipocyte Differentiation for Detecting Changes of Gene Regulations by Splitting Time Course Data2012

    • Author(s)
      Tomoyoshi Nakayama, Yoshiyuki Kido,Hiromi Daiyasu, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      23rd International Conference on Genome Informatics(GIW2012)
    • Place of Presentation
      National Cheng Kung University, Tainan, Taiwan
    • Year and Date
      2012-12-13
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Direct unique gene regulatory networks along dendrogram of cell differentiation2011

    • Author(s)
      Ryo Araki, Yoichi Takenaka, Tomoshige Ohno, Yukito Watanabe, Shigeto Seno, Hideo Matsuda
    • Organizer
      InCoB/ISCB-Asia Joint Conference 2011
    • Place of Presentation
      Renaissance Hotel, Kuala Lumpur, Malaysia
    • Year and Date
      2011-11-30
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Network analysis for time-series expression profile using nested effects models2011

    • Author(s)
      Tatsuya Kitaguchi, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      The 2011 Joint Conference of CBI and JSBi (CBI/JSBi2011)
    • Place of Presentation
      Kobe International Conference Center, Hyogo.
    • Year and Date
      2011-11-08
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] A Directed Graphical Gaussian Model for Inferring Gene Regulatory Networks2011

    • Author(s)
      Tomoshige Ohno, Kiyoshi Yoshizawa, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      The 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB2011)
    • Place of Presentation
      Austria Center Vienna, Vienna, Austria
    • Year and Date
      2011-07-19
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] A Method for Inference of Gene Regulatory Network based on Bayesian Network with Uniting of Partial Problems2011

    • Author(s)
      Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      The 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB2011)
    • Place of Presentation
      Austria Center Vienna, Vienna, Austria.
    • Year and Date
      2011-07-18
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Reconstruction of Gene Regulatory Networks for Drug Target Discovery2010

    • Author(s)
      Hideo Matsuda
    • Organizer
      The 3rd National Seminar and Workshop on Computer Aided-Drug Design: Virtual Screening (CADD2010)
    • Place of Presentation
      Gurney Hotel, Penang, Malaysia
    • Year and Date
      2010-12-03
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] An estimation method of S-system model of gene regulatory networks using immune algorithm2010

    • Author(s)
      T.Nakayama, S.Seno, Y.Takenaka, H.Matsuda
    • Organizer
      International Conference on Intelligent Sysmtes for Molecular Biology (ISMB2010)
    • Place of Presentation
      Hynes Convention Center, Boston (USA)
    • Year and Date
      2010-07-12
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Revealing regulatory relationships of crosstalk with multiple time-series gene expression profiles2010

    • Author(s)
      Kiyoshi Yoshizawa, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
    • Organizer
      The 2010 Annual Conference of the Japanese Society for Bioinformatics (JSBi2010)
    • Place of Presentation
      Centennial Hall, Kyushu University School of Medicine, Fukuoka.
    • Year and Date
      2010-12-13
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Revealing regulatory relationships of crosstalk with multiple time-series gene expression profiles2010

    • Author(s)
      K.Yoshizawa, S.Seno, Y.Takenaka, H.Matsuda
    • Organizer
      Annual Conference of the Japanese Society for Bioinformatics (JSBi2010)
    • Place of Presentation
      九州大学医学部百年講堂、福岡県
    • Year and Date
      2010-12-13
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] 大規模遺伝子ネットワーク解析とその応用2010

    • Author(s)
      松田秀雄
    • Organizer
      情報計算化学生物学会2010年大会
    • Place of Presentation
      学術総合センター、東京都(招待講演)
    • Year and Date
      2010-09-15
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Reconstruction of gene regulatory networks for drug target discovery2010

    • Author(s)
      H.Matsuda
    • Organizer
      3rd Workshop on Computer Aided-Drug Design (CADD2010)
    • Place of Presentation
      Gurney Hotel, Penang (Malaysia)(招待講演)
    • Year and Date
      2010-12-03
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Architecture of an Efficient Data Transfer System and Manager for Genome-wide Analysis Workflows2008

    • Author(s)
      J. Seo, Y. Kido, S. Seno, Y. Takenaka, H. Matsuda
    • Organizer
      3rd MEI International Symposium
    • Place of Presentation
      サンフランシスコ、アメリカ
    • Year and Date
      2008-12-02
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Presentation] An Efficient Data Transfer, on Workflows for Genome-wide Analysis2008

    • Author(s)
      J. Seo, Y. Kido, S. Seno, Y. Takenaka, H. Matsuda
    • Organizer
      An Efficient Data Transfer, on Workflows for Genome-wide Analysis
    • Place of Presentation
      千里中央、大阪
    • Year and Date
      2008-12-16
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Presentation] A Method for Making a New Reference Set of PDB Entries for Retrieving Protein 3D Structures with Structural Annotations2008

    • Author(s)
      M. Hamada, Y. Kido, S. Seno, H. Daiyasu, Y. Takenaka. H. Matsuda
    • Organizer
      Annual Conf Japanese Society for Bioinformatics
    • Place of Presentation
      千里中央、大阪
    • Year and Date
      2008-12-15
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Presentation] A Data Transmission Method for Web Services in Bioinformatics Workflows2008

    • Author(s)
      J. Seo, S. Seno, Y. Takenaka, H. Matsuda
    • Organizer
      Intl Conf Intelligent Systems for Molecular Biology
    • Place of Presentation
      トロント、カナダ
    • Year and Date
      2008-07-21
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Presentation] A Method for Reducing Bounds of Compound Search by Dividing Structure Key2008

    • Author(s)
      T. Shimizu, Y. Kido, S. Seno, Y. Takenaka, H. Matsuda
    • Organizer
      Annual Conf Japanese Society for Bioinformatics
    • Place of Presentation
      千里中央、大阪
    • Year and Date
      2008-12-16
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Presentation] グラフ構造を用いた組織特異的な選択的スプライシングの解析手法2007

    • Author(s)
      瀬尾茂人、竹中要一、松田秀雄
    • Organizer
      日本分子生物学会第30回大会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-11
    • Data Source
      KAKENHI-PROJECT-17020001
  • [Presentation] A Method for Retrieving Functionally Similar Bioinformatics Workflows2007

    • Author(s)
      J., Seo・S., Seno・Y., Takenaka・H., Matsuda
    • Organizer
      Annual Conference of Japanese Society for Bioinformatics
    • Place of Presentation
      東京,日本科学未来館
    • Year and Date
      2007-12-17
    • Data Source
      KAKENHI-PROJECT-19024050
  • [Presentation] Large-Scale Gene Regulatory Network Analysis for Adipocyte Differentiation on High-Performance Computer

    • Author(s)
      Hideo Matsuda
    • Organizer
      International Conference on Genome Informatics (GIW2012)
    • Place of Presentation
      National Cheng Kung University, Taiwan
    • Invited
    • Data Source
      KAKENHI-PROJECT-22310125
  • [Presentation] Improvement approach of cell tracking accuracy by using inter-frame information

    • Author(s)
      Kohei Kurashige, Shigeto Seno, Tomohiro Mashita, Junichi Kikuta, Yoichi Takenaka, Masaru Ishii, Hideo Matsuda
    • Organizer
      Bioimage Informatics Conference
    • Place of Presentation
      フラームスブラバント州庁舎(ルーベン、ベルギー)
    • Year and Date
      2014-10-08 – 2014-10-10
    • Data Source
      KAKENHI-PROJECT-24651229
  • [Presentation] An automatic event detection method using semi-supervised learning for time-lapse imaging data

    • Author(s)
      Kojiro Fukuda, Shigeto Seno, Tomohiro Mashita, Yoichi Takenaka, Masaru Ishii, Hideo Matsuda
    • Organizer
      Bioimage Informatics Conference
    • Place of Presentation
      フラームスブラバント州庁舎(ルーベン、ベルギー)
    • Year and Date
      2014-10-08 – 2014-10-10
    • Data Source
      KAKENHI-PROJECT-24651229
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  • 2.  KANEDA Yukio (80107979)
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  • 19.  TAKI Kazuo (20243321)
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  • 26.  綿谷 泰典 (90230945)
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  • 27.  熊本 悦子 (00221383)
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  • 39.  浅井 潔
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