KATOU Yuki 加藤由紀

Researcher Number	50391917
Affiliation (based on the past Project Information) *help	2011 – 2016: 東京大学, 分子細胞生物学研究所, 助教 2011: 東京大学, 分子生物学研究所, 助教 2010: Tokyo Institute of Technology, 生命理工学研究科, その他 2009: Tokyo Institute of Technology, 大学院・生命理工学研究科, 特任助教
Review Section/Research Field	Principal Investigator 基礎ゲノム科学 Except Principal Investigator Biological Sciences / Laboratory animal science
Keywords	Principal Investigator 染色体 / ゲノム機能 / 細胞周期 / コヒーシン / アセチル化 / ChIP-seq解析 / ChIP-chip解析 Except Principal Investigator DNA / ゲノム / 非コード領域 … More / 組換え / 転写 / クロマチン / エピゲノム / 遺伝 / 非コードDNA / 偽遺伝子 / ncDNA / 遺伝情報 / 減数分裂 / アフリカツメガエル / 器官再生 / 未分化増殖細胞 / インターロイキン-11 / ゲノム編集 / PhyH-like / Phyhd1 / T細胞活性化 / 再生芽 / 増殖細胞 / Interleukin 11 / 脊索 / pentraxin / 再生 / 免疫細胞 / 非自己 / Interleukin / T細胞 / 自己免疫応答 / interleukin-11 / keratin-18 Less

Study on the reactivation of regenerative ability by masking 'autoantigens' expressed in organ blastema.
- Principal Investigator
  
  Kubo Takeo
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Laboratory animal science
- Research Institution
  The University of Tokyo
DNA reorganization mechanisms in non-coding genome
- Principal Investigator
  
  OHTA Kunihiro
- Project Period (FY)
  2011 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Analysis of the acetylation of SMC3Principal Investigator
- Principal Investigator
  
  KATOU Yuki
- Project Period (FY)
  2009 – 2012
- Research Category
  
  Grant-in-Aid for Young Scientists (A)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  The University of Tokyo
  Tokyo Institute of Technology

All 2015 2014 2012 2011 2010 2009 Other

All Journal Article Presentation

[Journal Article] Germline gain-of-function mutations in AFF4 cause a developmental syndrome functionally linking the super elongation complex and cohesin.2015
- Author(s)
  Izumi K, Nakato R, Zhang Z, Edmondson AC, Noon S, Dulik MC, Rajagopalan R, Venditti CP, Gripp K, Samanich J, Zackai EH, Deardorff MA, Clark D, Allen JL, Dorsett D, Misulovin Z, Komata M, Bando M, Kaur M, Katou Y, Shirahige K*, Krantz ID*.
- Journal Title
  
  Nat Genet.
  
  Volume: 47 Pages: 338-338
- DOI
  10.1038/ng.3229
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-ORGANIZER-22125001, KAKENHI-PROJECT-22221009, KAKENHI-PROJECT-25290065, KAKENHI-PLANNED-23114003, KAKENHI-PUBLICLY-15H01347
[Journal Article] Unique Gene Expression Profile of the Proliferating Xenopus Tadpole Tail Blastema Cells Deciphered by RNA-Sequencing Analysis.2015
- Author(s)
  Hiroshi Tsujioka, Takekazu kunieda, Yuki Katou, Katsuhiko Shirahige, Takeo Kubo
- Journal Title
  
  PLoS One.
  
  Volume: 10(3)
- DOI
  10.1371/journal.pone.0111655
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26640051, KAKENHI-PLANNED-23114003
[Journal Article] The chromosomal association of the Smc5/6 complex depends on cohesion and predicts the level of sister chromatid entanglement.2015
- Author(s)
  Jeppsson K, Carlborg KK, Nakato R, Berta DG, Lilienthal I, Kanno T, Lindqvist A, Brink MC, Dantuma NP, Katou Y, Shirahige K, Sjögren C.
- Journal Title
  
  PLoS Genet.
  
  Volume: 10
- DOI
  10.1371/journal.pgen.1004680
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-23114003
[Journal Article] Exome Sequencing Identification of EP300 Mutation in a Proband with Coloboma and Imperforate Anus: Possible Expansion of the Phenotypic Spectrum of Rubinstein-Taybi Syndrome.2015
- Author(s)
  Koji Masuda, Kazuhiro Akiyama, Michiko Arakawa, Eriko Nishi, Noritaka Kitazawa, Tsukasa Higuchi, Yuki Katou, Katsuhiko Shirahige, Kosuke Izumi
- Journal Title
  
  Mol Syndromol.
  
  Volume: 6 Pages: 99-103
- DOI
  10.1159/000375542
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15J10948, KAKENHI-PLANNED-23114003
[Journal Article] Quantitative Dynamics of Chromatin Remodeling during Germ Cell Specification from Mouse Embryonic Stem Cells.2015
- Author(s)
  Kurimoto, K., Yabuta, Y., Hayashi, K., Ohta, H., Kiyonari, H., Mitani, T., Moritoki, Y., Kohri, K., Kimura, H., Yamamoto, T., Katou, Y., Shirahige, K., Saitou, M.
- Journal Title
  
  Stem Cells
  
  Volume: 16 Pages: 2668-2678
- DOI
  10.1016/j.stem.2015.03.002
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-24681039, KAKENHI-PROJECT-25650065, KAKENHI-PLANNED-23114003, KAKENHI-PLANNED-25114006, KAKENHI-PROJECT-25290033
[Journal Article] Replication-Coupled PCNA Unloading by the Elg1 Complex Occurs Genome-wide and Requires Okazaki Fragment Ligation.2015
- Author(s)
  Takashi Kubota, Yuki Katou, Ryuichiro Nakato, Katsuhiko Shirahige, Anne D. Donaldson
- Journal Title
  
  Cell Rep.
  
  Volume: 12 Pages: 774-787
- DOI
  10.1016/j.celrep.2015.06.066
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K18465, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PLANNED-23114003
[Journal Article] BRCA2 coordinates the activities of cell-cycle kinases to promote genome stability.2014
- Author(s)
  Yata K, Bleuyard JY, Nakato R, Ralf C, Katou Y, Schwab RA, Niedzwiedz W, Shirahige K, Esashi F.
- Journal Title
  
  Cell Rep.
  
  Volume: 7 Pages: 1547-1559
- DOI
  10.1016/j.celrep.2014.04.023
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-23114003
[Journal Article] 5-Hydroxymethylcytosine plays a critical role in glioblastomagenesis by recruiting the CHTOP-methylosome complex.2014
- Author(s)
  Hiroki Takai, Tetsu Akiyama et al.
- Journal Title
  
  Cell Rep
  
  Volume: 9 Pages: 48-60
- DOI
  10.1016/j.celrep.2014.08.071
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-14J10908, KAKENHI-ORGANIZER-22112001, KAKENHI-PLANNED-22112004, KAKENHI-PROJECT-24390340, KAKENHI-PROJECT-24501313, KAKENHI-PUBLICLY-25134702, KAKENHI-PROJECT-25620125, KAKENHI-PROJECT-26220205, KAKENHI-PROJECT-26253073, KAKENHI-PROJECT-26293321, KAKENHI-PROJECT-26560442, KAKENHI-PROJECT-26702035, KAKENHI-PLANNED-23114003, KAKENHI-PLANNED-26113003
[Journal Article] Dimeric combinations of MafB, cFos, and cJun control the apoptosis-survival balance in limb patterning.2014
- Author(s)
  N. suda, T. Itoh, R. Nakato et. al.
- Journal Title
  
  Development.
  
  Volume: 141 Pages: 2885-2894
- DOI
  10.1242/dev.099150
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-22125008, KAKENHI-PUBLICLY-25111720, KAKENHI-PROJECT-25291086, KAKENHI-PROJECT-25461353, KAKENHI-PLANNED-23114003
[Journal Article] EndogenousDNA replication stress results inexpansion of dNTP pools and a mutator phenotype2012
- Author(s)
  Davidson MB, KatouY , Keszthelyi A,Sing TL, Xia T, Ou J, Vaisica JA,Thevakumaran N, Marjavaara L, Myers CL,Chabes A, Shirahige K, Brown GW
- Journal Title
  
  EMBO J
  
  Volume: 31(4) Pages: 895-907
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21681025
[Journal Article] Shirahige K, Labib K.Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases2012
- Author(s)
  De Piccoli G, Katou Y , Itoh T, Nakato
- Journal Title
  
  Mol Cell
  
  Volume: 45(5) Pages: 696-704
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21681025
[Journal Article] Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype2012
- Author(s)
  Davidson MB, Katou Y, Keszthelyi A, Sing TL, Xia T, Ou J, Vaisica JA, Thevakumaran N, Marjavaara L, Myers CL, Chabes A, Shirahige K, Brown GW
- Journal Title
  
  EMBO J
  
  Volume: 31(4) Pages: 895-907
- DOI
  10.1038/emboj.2011.485
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21681025, KAKENHI-ORGANIZER-23114001, KAKENHI-PLANNED-23114003
[Journal Article] Chromosome length influences replication-induced topological stress2011
- Author(s)
  Kegel A, Betts-Lindroos H, Kanno T, Jeppsson K, Strom L, Katou Y, Itoh T, Shirahige K, Sjogren C
- Journal Title
  
  Nature
  
  Volume: 471(7338 Pages: 392-396
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21681025
[Journal Article] Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing2011
- Author(s)
  Tanaka S, Nakato R, Katou Y, Shirahige K, Araki H
- Journal Title
  
  Curr Biol
  
  Volume: 21(24) Pages: 2055-2063
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21681025
[Journal Article] The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores2011
- Author(s)
  Bermejo R, Capra T, Jossen R, Colosio A, Frattini C, Carotenuto W, Cocito A, Doksani Y, Klein H, Gomez-Gonzalez B, Aguilera A, Katou Y, Shirahige K, Foiani M
- Journal Title
  
  Cell
  
  Volume: 146(2) Pages: 233-246
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21681025
[Journal Article] Shirahige K, Araki H.Origin association of Sld3,Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing.2011
- Author(s)
  Tanaka S, Nakato R, Katou Y
- Journal Title
  
  Curr Biol
  
  Volume: 21(24) Pages: 2055-63
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21681025
[Journal Article] Both interaction surfaces within cohesin's hinge domain are essential for its stable chromosomal association2010
- Author(s)
  Mishra A, Hu B, Kurze A, Beckouet F, Farcas AM, Dixon SE, Katou Y, Khalid S, Shirahige K, Nasmyth K
- Journal Title
  
  Curr Biol 20
  
  Pages: 279-289
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21681025
[Journal Article] Tof1,and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks2009
- Author(s)
  Bando M*, Katou Y *, Komata M, Tanaka H,Itoh T, Sutani T, Shirahige K. Csm3
- Journal Title
  
  J Biol Chem
  
  Volume: 284(49) Pages: 34355-65
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21681025
[Journal Article] Ctf4 coordinates the progression of helicase and DNA polymerase alpha. Genes2009
- Author(s)
  Tanaka H*, Katou Y * , Yagura M, Saitoh K, Itoh T, Araki H, Bando M, Shirahige K.
- Journal Title
  
  Cells
  
  Volume: 14(7) Pages: 807-20
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21681025
[Journal Article] Involvement of a chromatin remodeling complex in damage tolerance during DNA replication2009
- Author(s)
  Falbo KB, Alabert C, Katou Y, Wu S, Han J, Wehr T, Xiao J, He X, Zhang Z, Shi Y, Shirahige K, Pasero P, Shen X.
- Journal Title
  
  Nat Struct Mol Biol. 16
  
  Pages: 1167-1172
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21681025
[Journal Article] Csm3, Tof1, and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks2009
- Author(s)
  Bando M, Katou Y, Komata M, Tanaka H, Itoh T, Sutani T, Shirahige K.
- Journal Title
  
  J Biol Chem. 284
  
  Pages: 34355-34365
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21681025
[Presentation] The role of interleukin 11-signaling in tail regeneration of Xenopus laevis tadpoles.2015
- Author(s)
  Tsujioka H, Kunieda T, Katou Y, Shirahige K, Kubo T
- Organizer
  Society for Developmental Biology 74th annual meeting
- Place of Presentation
  Snowbird, Utah USA
- Year and Date
  2015-07-09
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26640051
[Presentation] Analysis of the role of interleukin 11 in tail regeneration of Xenopus laevis tadpoles2015
- Author(s)
  辻岡洋、國枝武和、加藤由紀、白髭克彦、久保健雄
- Organizer
  第48回日本発生生物学会大会
- Place of Presentation
  つくば国際会議場　（茨城県つくば市）
- Year and Date
  2015-06-02
- Data Source
  KAKENHI-PROJECT-26640051
[Presentation] Mec1 is required for efficient progression of replication forks at cohesin localization sites2012
- Author(s)
  Yuki KATOU
- Organizer
  The 13th International Conference on Systems Biology
- Place of Presentation
  Toront,Canada
- Data Source
  KAKENHI-PROJECT-21681025
[Presentation] Genome-wide Dynamic change of Cohesin and replication in yeast.2012
- Author(s)
  Yuki Katou, Ryuichiro Nakato,Katsuhiko Shirahige
- Organizer
  The 13th International Conference on Systems Biology
- Place of Presentation
  in Toronto
- Data Source
  KAKENHI-PROJECT-21681025
[Presentation] 発表タイトル:次世代シーケンサーを使用した姉妹染色分体間の接着形成に必要な因子の解析2010
- Author(s)
  加藤由起、伊藤武彦、白髭克彦
- Organizer
  日本分子生物学会年会
- Place of Presentation
  in Kobe Japan
- Data Source
  KAKENHI-PROJECT-21681025
[Presentation] Csm3, Tof1, and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks2009
- Author(s)
  加藤由起、坂東優篤、白髭克彦
- Organizer
  第32回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2009-12-11
- Data Source
  KAKENHI-PROJECT-21681025
[Presentation] Csm3,Tof1,and Mrc1 form a Heterotrimeric Mediator Complex that Associates with DNA Replication Forks2009
- Author(s)
  加藤由起、田中宏和,白髭克彦
- Organizer
  日本分子生物学会年会
- Place of Presentation
  in
- Data Source
  KAKENHI-PROJECT-21681025
[Presentation] アフリカツメガエル幼生尾の再生芽増殖細胞に選択的に発現する遺伝子の網羅的検索と解析
- Author(s)
  辻岡洋、國枝武和、加藤由起、白髭克彦、久保健雄
- Organizer
  日本動物学会　第85回　仙台大会
- Place of Presentation
  宮城県仙台市　東北大学川内北キャンパス
- Year and Date
  2014-09-11 – 2014-09-13
- Data Source
  KAKENHI-PROJECT-26640051
[Presentation] アフリカツメガエル幼生尾の再生芽増殖細胞に選択的に発現する遺伝子の網羅的検索と解析
- Author(s)
  辻岡洋、國枝武和、加藤由起、白髭克彦、久保健雄
- Organizer
  第66回　日本細胞生物学会大会
- Place of Presentation
  奈良県奈良市　新公会堂　東大寺総合文化センター
- Year and Date
  2014-06-11 – 2014-06-13
- Data Source
  KAKENHI-PROJECT-26640051
[Presentation] Comprehensive screening and identification of genes expressed preferentially in the proliferating blastema cells of the Xenopus laevis tadpole tails
- Author(s)
  Hiroshi Tsujioka, Takekazu Kunieda, Yuki Katou, Katsuhiko Shirahige, Takeo Kubo
- Organizer
  47th Annual Meeting of the Japanese Society of Developmental Biologists
- Place of Presentation
  愛知県名古屋市　WINC AICHI
- Year and Date
  2014-05-27 – 2014-05-30
- Data Source
  KAKENHI-PROJECT-26640051
[Presentation] アフリカツメガエル幼生尾の再生芽増殖細胞に選択的に発現する遺伝子の解析
- Author(s)
  辻岡洋、國枝武和、加藤由起、白髭克彦、久保健雄
- Organizer
  第37回　日本分子生物学会年会
- Place of Presentation
  神奈川県横浜市　パシフィコ横浜
- Year and Date
  2014-11-25 – 2014-11-27
- Data Source
  KAKENHI-PROJECT-26640051

1. OHTA Kunihiro (90211789)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
2. YAMADA Takatomi (30451850)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. Kubo Takeo (10201469)

# of Collaborated Projects: 1 results

# of Collaborated Products: 7 results
4. SHIRAHIGE Katsuhiko (90273854)

# of Collaborated Projects: 1 results

# of Collaborated Products: 9 results
5. ITOH Takehiko

# of Collaborated Projects: 0 results

# of Collaborated Products: 3 results
6. NAKATO Ryuichiro

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
7. NASU Ryo

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
8. MUKASA Akitake

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
9. SAITO Kuniaki

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
10. SUZUKI Takeo

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
11. 坂東優篤

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
12. 佐藤靖史

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
13. 秋山徹

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
14. 藤堂具紀

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
15. 稲生靖

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
16. 鈴木勉

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
17. 栗本一基

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
18. 林克彦

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
19. 片岡浩介

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
20. 黒川大輔

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
21. 田中幹子

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

KATOU Yuki 加藤 由紀

Research Projects

Research Products

Co-Researchers

Study on the reactivation of regenerative ability by masking 'autoantigens' expressed in organ blastema.

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

DNA reorganization mechanisms in non-coding genome

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Analysis of the acetylation of SMC3Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Germline gain-of-function mutations in AFF4 cause a developmental syndrome functionally linking the super elongation complex and cohesin.2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Unique Gene Expression Profile of the Proliferating Xenopus Tadpole Tail Blastema Cells Deciphered by RNA-Sequencing Analysis.2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The chromosomal association of the Smc5/6 complex depends on cohesion and predicts the level of sister chromatid entanglement.2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Exome Sequencing Identification of EP300 Mutation in a Proband with Coloboma and Imperforate Anus: Possible Expansion of the Phenotypic Spectrum of Rubinstein-Taybi Syndrome.2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Quantitative Dynamics of Chromatin Remodeling during Germ Cell Specification from Mouse Embryonic Stem Cells.2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Replication-Coupled PCNA Unloading by the Elg1 Complex Occurs Genome-wide and Requires Okazaki Fragment Ligation.2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] BRCA2 coordinates the activities of cell-cycle kinases to promote genome stability.2014

Author(s)

Journal Title

DOI

Data Source

[Journal Article] 5-Hydroxymethylcytosine plays a critical role in glioblastomagenesis by recruiting the CHTOP-methylosome complex.2014

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Dimeric combinations of MafB, cFos, and cJun control the apoptosis-survival balance in limb patterning.2014

Author(s)

Journal Title

DOI

Data Source

[Journal Article] EndogenousDNA replication stress results inexpansion of dNTP pools and a mutator phenotype2012

Author(s)

Journal Title

Data Source

[Journal Article] Shirahige K, Labib K.Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases2012

Author(s)

Journal Title

Data Source

[Journal Article] Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype2012

Author(s)

Journal Title

DOI

Data Source

KATOU Yuki 加藤由紀