KAMIMURA Atsushi 上村淳

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Kamimura Atsushi 上村淳

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Researcher Number	50582847
Other IDs
Affiliation (Current)	2026: 東京大学, 生産技術研究所, 技術専門職員
Affiliation (based on the past Project Information) *help	2021 – 2024: 東京大学, 生産技術研究所, 特任助教
Review Section/Research Field	Principal Investigator 1002:Human informatics, applied informatics and related fields
Keywords	Principal Investigator 細胞分裂 / 自己複製

Research Projects
(1 results)
Research Products
(23 results)

Understanding Cellular Self-Replication and Its Regulatory PrinciplesPrincipal Investigator
- Principal Investigator
  
  Kamimura Atsushi
- Project Period (FY)
  2021 – 2024
- Research Category
  
  Grant-in-Aid for Research Activity Start-up
- Review Section
  
  1002:Human informatics, applied informatics and related fields
- Research Institution
  The University of Tokyo

All 2025 2024 2023 2022 2021

All Journal Article Presentation

[Journal Article] Chemical thermodynamics of growing autocatalytic processes2024
- Author(s)
  上村淳、杉山友規、小林徹也
- Journal Title
  
  Oyo Buturi
  
  Volume: 93 Issue: 11 Pages: 624-629
- DOI
  10.11470/oubutsu.93.11_624
- ISSN
  0369-8009, 2188-2290
- Year and Date
  2024-11-01
- Language
  Japanese
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K21308, KAKENHI-PROJECT-24K00542
[Journal Article] Thermodynamic and stoichiometric laws ruling the fates of growing systems2024
- Author(s)
  Kamimura Atsushi, Sughiyama Yuki, Kobayashi Tetsuya J.
- Journal Title
  
  Physical Review Research
  
  Volume: 6 Issue: 2 Pages: 023173-023173
- DOI
  10.1103/physrevresearch.6.023173
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K21308, KAKENHI-PROJECT-24K00542
[Journal Article] Chemical thermodynamics of growing autocatalytic processes2024
- Author(s)
  Kamimura Atsushi, Sughiyama Yuki, Kobayashi Tetsuya J.
- Journal Title
  
  JSAP Review
  
  Volume: 2024 Issue: 0 Pages: n/a
- DOI
  10.11470/jsaprev.240217
- ISSN
  2437-0061
- Language
  English
- Open Access
- Data Source
  KAKENHI-PROJECT-21K21308, KAKENHI-PROJECT-24K00542
[Journal Article] Hessian geometry of nonequilibrium chemical reaction networks and entropy production decompositions2022
- Author(s)
  Kobayashi Tetsuya J.、Loutchko Dimitri、Kamimura Atsushi、Sughiyama Yuki
- Journal Title
  
  Physical Review Research
  
  Volume: 4 Issue: 3 Pages: 033208-033208
- DOI
  10.1103/physrevresearch.4.033208
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K21308, KAKENHI-ORGANIZER-19H05794, KAKENHI-PLANNED-19H05799
[Journal Article] Kinetic derivation of the Hessian geometric structure in chemical reaction networks2022
- Author(s)
  Kobayashi Tetsuya J.、Loutchko Dimitri、Kamimura Atsushi、Sughiyama Yuki
- Journal Title
  
  Physical Review Research
  
  Volume: 4 Issue: 3 Pages: 033066-033066
- DOI
  10.1103/physrevresearch.4.033066
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K21308, KAKENHI-ORGANIZER-19H05794, KAKENHI-PLANNED-19H05799
[Journal Article] Hessian geometric structure of chemical thermodynamic systems with stoichiometric constraints2022
- Author(s)
  Sughiyama Yuki、Loutchko Dimitri、Kamimura Atsushi、Kobayashi Tetsuya J.
- Journal Title
  
  Physical Review Research
  
  Volume: 4 Issue: 3 Pages: 033065-033065
- DOI
  10.1103/physrevresearch.4.033065
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K21308, KAKENHI-ORGANIZER-19H05794, KAKENHI-PLANNED-19H05799
[Journal Article] Chemical thermodynamics for growing systems2022
- Author(s)
  Sughiyama Yuki、Kamimura Atsushi、Loutchko Dimitri、Kobayashi Tetsuya J.
- Journal Title
  
  Physical Review Research
  
  Volume: 4 Issue: 3 Pages: 033191-033191
- DOI
  10.1103/physrevresearch.4.033191
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K21308, KAKENHI-ORGANIZER-19H05794, KAKENHI-PLANNED-19H05799
[Presentation] Analysis of cell growth and division using neural-network-aided point processes2025
- Author(s)
  Atsushi Kamimura, Tetsuya J. Kobayashi
- Organizer
  TSVP Symposium "Computational and Physical Understanding of Biological Information Processing"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] 体積成長を伴う自己複製反応における拘束2024
- Author(s)
  上村　淳、杉山友規、小林徹也
- Organizer
  日本物理学会第79回年次大会
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] Physical constraints for growing systems2024
- Author(s)
  上村　淳
- Organizer
  CREST「多細胞間での時空間的相互作用の理解を目指した定量的解析基盤の創出」第6回領域会議
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] 深層生成隠れマルコフモデルの安定した学習方法の提案2024
- Author(s)
  谷本佑馬、小林徹也、上村　淳
- Organizer
  第27回画像の認識・理解シンポジウム MIRU 2024
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] Stoichiometric constraints alter thermodynamic fates of growing systems2024
- Author(s)
  Atsushi Kamimura, Yuki Sughiyama, Tetsuya J. Kobayashi
- Organizer
  21st IUPAB Congress 2024
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] Conservation laws alter the thermodynamic fates of growing systems2024
- Author(s)
  Atsushi Kamimura
- Organizer
  Autocatalysis in reaction networks (ARN) seminar
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] 機械学習ベースの隠れ状態推定手法の比較と生物データへの応用2023
- Author(s)
  谷本佑馬、上村　淳、小林徹也
- Organizer
  第26回情報論的学習理論ワークショップ
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] The fate of growing systems under thermodynamic and stoichiometric constraints2023
- Author(s)
  Atsushi Kamimura, Yuki Sughiyama, Tetsuya J. Kobayashi
- Organizer
  STATPHYS28 The 28th IUPAP International Conference on Statistical Physics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] 体積成長を考慮した自己複製系の化学熱力学2023
- Author(s)
  上村　淳、杉山友規、小林徹也
- Organizer
  「細胞を創る」研究会 16.0
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] Chemical thermodynamics for growing protocells2023
- Author(s)
  Atsushi Kamimura, Yuki Sughiyama, Tetsuya J. Kobayashi
- Organizer
  Origins of Life Donostia Meeting 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] Chemical thermodynamics for growing compartments2023
- Author(s)
  Atsushi Kamimura, Yuki Sughiyama, Dimitri Loutchko, Tetsuya J. Kobayashi
- Organizer
  Molecular Origins of Life, Munich 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] 体積成長を伴う自己複製反応過程の熱力学2023
- Author(s)
  上村　淳
- Organizer
  Biothermology Workshop
- Invited
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] Chemical thermodynamics for growing compartments with stoichiometric constraints2023
- Author(s)
  上村　淳、杉山友規、小林徹也
- Organizer
  日本生物物理学会第61回年次大会
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] 細胞成長の化学熱力学的な制限2022
- Author(s)
  上村　淳
- Organizer
  新学術領域「情報物理学でひもとく生命の秩序と設計原理」領域会議
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] A general approach to chemical thermodynamics and constraints for growing systems2022
- Author(s)
  上村　淳
- Organizer
  日本生物物理学会第60回年次大会
- Data Source
  KAKENHI-PROJECT-21K21308
[Presentation] Representation and inference of cell growth and division by neural-network-aided point processes2021
- Author(s)
  上村　淳
- Organizer
  日本生物物理学会第59回年次大会
- Data Source
  KAKENHI-PROJECT-21K21308

KAMIMURA Atsushi 上村 淳

Kamimura Atsushi 上村 淳

Research Projects

Research Products

Understanding Cellular Self-Replication and Its Regulatory PrinciplesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Chemical thermodynamics of growing autocatalytic processes2024

Author(s)

Journal Title

DOI

ISSN

Year and Date

Language

Data Source

[Journal Article] Thermodynamic and stoichiometric laws ruling the fates of growing systems2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Chemical thermodynamics of growing autocatalytic processes2024

Author(s)

Journal Title

DOI

ISSN

Language

Data Source

[Journal Article] Hessian geometry of nonequilibrium chemical reaction networks and entropy production decompositions2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Kinetic derivation of the Hessian geometric structure in chemical reaction networks2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Hessian geometric structure of chemical thermodynamic systems with stoichiometric constraints2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Chemical thermodynamics for growing systems2022

Author(s)

Journal Title

DOI

Data Source

[Presentation] Analysis of cell growth and division using neural-network-aided point processes2025

Author(s)

Organizer

Data Source

[Presentation] 体積成長を伴う自己複製反応における拘束2024

Author(s)

Organizer

Data Source

[Presentation] Physical constraints for growing systems2024

Author(s)

Organizer

Data Source

[Presentation] 深層生成隠れマルコフモデルの安定した学習方法の提案2024

Author(s)

Organizer

Data Source

[Presentation] Stoichiometric constraints alter thermodynamic fates of growing systems2024

Author(s)

Organizer

Data Source

[Presentation] Conservation laws alter the thermodynamic fates of growing systems2024

Author(s)

Organizer

Data Source

[Presentation] 機械学習ベースの隠れ状態推定手法の比較と生物データへの応用2023

Author(s)

Organizer

Data Source

[Presentation] The fate of growing systems under thermodynamic and stoichiometric constraints2023

Author(s)

KAMIMURA Atsushi 上村淳

Kamimura Atsushi 上村淳