YAMATO Ichiro 山登一郎

… Alternative Names

山登一郎ヤマトイチロウ

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Researcher Number	70111458
Other IDs
External Links
Affiliation (based on the past Project Information) *help	2016: 東京理科大学, 基礎工学部, 教授 2011 – 2013: 東京理科大学, 基礎工学部, 教授 2007 – 2008: 東京理科大学, 基礎工学部, 教授 1997 – 2004: 東京理科大学, 基礎工学部, 教授 1995: 東京理科大学, 基礎工学部, 教授 … More 1992 – 1994: 東京理科大学, 基礎工学部, 助教授 1989 – 1990: 東京理科大学, 基礎工学部, 助教授 1986: Faculty of Science, University of Tokyo, 理学部, 助手 Less
Review Section/Research Field	Principal Investigator Functional biochemistry / 代謝生物化学 Except Principal Investigator Structural biochemistry / Biological Sciences / 代謝生物化学
Keywords	Principal Investigator 大腸菌 / エネルギー共役 / 二次性能動輸送 / 逐次結合モデル / Na^+結合部位 / osmotolerance / energy coupling mechanism / NaィイD1+ィエD1 binding / purification & reconstitution / Enterococcus hirae … More / NaィイD1+ィエD1-translocating ATPase / V-type ATPase / 耐塩性 / 反応機構モデル / Na^+結合反応 / 精製と再構成 / 腸内連鎖球菌 / Na^+輸送性ATPアーゼ / 液胞型ATPアーゼ / Co-transport / Sugar & amino acid transport / Site specific mutagenesis / Affinity model / Energy coupling / Carrier / Secondary active transport / Escherichi coli / 基質結合反応 / 共輸送 / 糖・アミノ酸輸送系 / 部位特異的変異導入 / 親和性モデル / エネルギ-共役 / 輸送タンパク質 / 自由エネルギー摂動計算 / 分子動力学シミュレーション / ポリン / チャンネルタンパク質 / Na^+共役系 / 能動輸送 / Na^+結合モチーフ / 遂次結合モデル … More Except Principal Investigator X線結晶構造解析 / V-ATPase / 分子モーター / 膜タンパク質 / 構造解析 / 回転分子モーター / Saccharomyces / Yeast / <H^+> -ATPase / Vacuole / 輸送蛋白質 / プロトンポンプ / ATPase / 液胞 / 酵母 / proteome / genome / molecular dynamics / simulation / prediction / protein function / protein structure / membrane protein / バイオインフォマティックス / 立体構造予測 / 構造・機能分類 / 構造・機能予測 / 受容体 / 輸送体 / 分子シミュレーション / 構造予測 / バイオインフォマティクス / チャネル / バクテリオロドプシン / ドッキング / 膜タンパク質予測 / 物理的予測 / タンパク質分類 / ポリンチャネル / 光受容膜タンパク質 / 計算機シミュレーション / シグナルペプチド / 分子認識 / 膜組み込み装置 / アミノ酸配列 / プロテオーム / ゲノム / 分子動力学 / シミュレーション / 予測 / 機能 / 構造 / 膜タンパク / ATP / 酵素反応 / Enterococcus hirae / 複合体 / モーター / ナトリウム / ポンプ / 情報構造 / Hyperbolic Tree / WebMap / 視覚化 / WWW Less

Molecular mechanism of the structural formation and functional regulation of the V1 rotary motor
- Principal Investigator
  
  Murata Takeshi
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Structural biochemistry
- Research Institution
  Chiba University
Structural basis of ATP hydrolysis mechanism of V1-ATPase motor
- Principal Investigator
  
  MURATA Takeshi
- Project Period (FY)
  2011 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Structural biochemistry
- Research Institution
  Chiba University
腸内連鎖球菌ナトリウム輸送性V型ATPアーゼの分子機構の解明
- Principal Investigator
  
  MURATA Takeshi
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyoto University
Prediction and Analysis for Structure and Function of Membrane Proteins
- Principal Investigator
  
  MITAKU Shigeki
- Project Period (FY)
  2000 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Nagoya University
  Tokyo University of Agriculture and Technology
エージェント型データマイニングに基づく知識発見法の開発と応用
- Principal Investigator
  
  溝口文雄
- Project Period (FY)
  1998
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Research Institution
  Tokyo University of Science
Structure and function of NaィイD1+ィエD1-translocating V-type ATPasePrincipal Investigator
- Principal Investigator
  
  YAMATO Ichiro
- Project Period (FY)
  1997 – 1999
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Functional biochemistry
- Research Institution
  Science University of Tokyo
二次性能動輸送タンパク質の共役イオン結合部位の構造Principal Investigator
- Principal Investigator
  
  山登一郎
- Project Period (FY)
  1995
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  Tokyo University of Science
チャンネルタンパク質内イオン透過機構の研究Principal Investigator
- Principal Investigator
  
  山登一郎
- Project Period (FY)
  1994
- Research Category
  
  Grant-in-Aid for General Scientific Research (C)
- Research Field
  
  Functional biochemistry
- Research Institution
  Tokyo University of Science
二次性能動輸送タンパク質の共役イオン結合部位の構造の研究Principal Investigator
- Principal Investigator
  
  山登一郎
- Project Period (FY)
  1993
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  Tokyo University of Science
能動輸送タンパク質のエネルギー共役機構Principal Investigator
- Principal Investigator
  
  山登一郎
- Project Period (FY)
  1993
- Research Category
  
  Grant-in-Aid for General Scientific Research (C)
- Research Field
  
  Functional biochemistry
- Research Institution
  Tokyo University of Science
二次性能動輸送系の遂次結合型エネルギー共役機構の熱力学Principal Investigator
- Principal Investigator
  
  山登一郎
- Project Period (FY)
  1992
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  Tokyo University of Science
Study of Transport Mechanism of Secondary Active Transport ProteinsPrincipal Investigator
- Principal Investigator
  
  YAMATO Ichiro
- Project Period (FY)
  1989 – 1990
- Research Category
  
  Grant-in-Aid for General Scientific Research (C)
- Research Field
  
  代謝生物化学
- Research Institution
  Science University of Tokyo
Biochemical Studies on <H^+> -ATPase and <Ca^(2+)> / <H^+> antiporter on the Yeast Vacuolar Membranes
- Principal Investigator
  
  ANRAKU Yasuhiro
- Project Period (FY)
  1985 – 1986
- Research Category
  
  Grant-in-Aid for General Scientific Research (B)
- Research Field
  
  代謝生物化学
- Research Institution
  Faculty of Science, University of Tokyo

All 2016 2014 2013 2011 2005 2004 2003 2000

All Journal Article Book Patent

[Book] Function and Regulation of Mammalian V-ATPase Isoforms, Regulation of Ca2+-ATPase, V-ATPases and F-ATPases, Advances in Biochemistry in Health and Disease 142016
- Author(s)
  Suhaila Rahman, Ichiro Yamato, Takeshi Murata
- Total Pages
  17
- Publisher
  Springer International Publishing
- Data Source
  KAKENHI-PROJECT-26291009
[Journal Article] Operating principles of rotary molecular motors: differences between F<sub>1</sub> and V<sub>1</sub> motors2016
- Author(s)
  Ichiro Yamato, Yoshimi Kakinuma, Takeshi Murata
- Journal Title
  
  Biophysics and Physicobiology
  
  Volume: 13 Issue: 0 Pages: 37-44
- DOI
  10.2142/biophysico.13.0_37
- NAID
  130005129245
- ISSN
  2189-4779
- Language
  English
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26291009
[Journal Article] Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor.2016
- Author(s)
  Kano Suzuki, Kenji Mizutani, Shintaro Maruyama, Kazumi Shimono, Fabiana L. Imai, Eiro Muneyuki, Yoshimi Kakinuma, Yoshiko Ishizuka-Katsura, Mikako Shirouzu, Shigeyuki Yokoyama, Ichiro Yamato, and Takeshi Murata
- Journal Title
  
  Nature Communications
  
  Volume: 7 Issue: 1 Pages: 13235-13235
- DOI
  10.1038/ncomms13235
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PUBLICLY-16H00811, KAKENHI-PROJECT-26291009
[Journal Article] Torque generation of Enterococcus hirae V-ATPase2014
- Author(s)
  Ueno H, Minagawa Y, Hara M, Rahman S, Yamato I, Muneyuki E, Murata T, and Iino R
- Journal Title
  
  The Journal of Biological Chemistry
  
  Volume: 289 Issue: 45 Pages: 31212-31223
- DOI
  10.1074/jbc.m114.598177
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-14J10948, KAKENHI-PLANNED-23115002, KAKENHI-PROJECT-24370062, KAKENHI-PROJECT-24570187, KAKENHI-PROJECT-25251016, KAKENHI-PROJECT-25840053, KAKENHI-PUBLICLY-26103528, KAKENHI-PROJECT-26291009
[Journal Article] Basic properties of rotary dynamics of the molecular motor Enterococcus hirae V1-ATPase2013
- Author(s)
  Yoshihiro Minagawa, Hiroshi Ueno, Mayu Hara, Yoshiko Ishizuka-Katsura, Noboru Ohsawa,Takaho Terada, Mikako Shirouzu, Shigeyuki Yokoyama, Ichiro Yamato, Eiro Muneyuki, Hiroyuki Noji, Takeshi Murata, and Ryota Iino
- Journal Title
  
  J.Biol.Chem
  
  Volume: 288 Issue: 45 Pages: 32700-32707
- DOI
  10.1074/jbc.m113.506329
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-23115002, KAKENHI-PROJECT-23370047, KAKENHI-PROJECT-24570187, KAKENHI-PROJECT-24651167, KAKENHI-PROJECT-25251016, KAKENHI-PROJECT-25840053
[Journal Article] Rotation mechanism of Enterococcus hirae V 1-ATPase based on asymmetric crystal structures2013
- Author(s)
  Satoshi Arai, Shinya Saijo, Kano Suzuki, Kenji Mizutani, Yoshimi Kakinuma, Yoshiko Ishizuka-Katsura, Noboru, Ohsawa, Takaho Terada, Mikako Shirouzu, Shigeyuki Yokoyama, So Iwata, Ichiro Yamato and Takeshi Murata
- Journal Title
  
  Nature
  
  Volume: 493 Issue: 7434 Pages: 703-707
- DOI
  10.1038/nature11778
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370047, KAKENHI-PROJECT-24570162, KAKENHI-PUBLICLY-23118705
[Journal Article] Mutant LV476-7AA of A-subunit of Enterococcus hirae V1-ATPase: High affinity of A3B3 complex to DF axis and low ATPase activity2013
- Author(s)
  Md. Jahangir Alam, Ichiro Yamato, Satoshi Arai, Shinya Saijo, Kenji Mizutani, Yoshiko Ishizuka-Katsura, Noboru Ohsawa, Takaho Terada, Mikako Shirouzu, Shigeyuki Yokoyama, So Iwata, Yoshimi Kakinuma and Takeshi Murata
- Journal Title
  
  SpringerPlus
  
  Volume: 2 Pages: 689-689
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370047
[Journal Article] Mutant LV476-7AA of A-subunit of Enterococcus hirae V 1-ATPase : High affinity of A3B3 complex to DF axis and low ATPase activity2013
- Author(s)
  Md. Jahangir Alam, Ichiro Yamato, Satoshi Arai, Shinya Saijo, Kenji Mizutani, Yoshiko Ishizuka-Katsura, Noboru Ohsawa, Takaho Terada, Mikako Shirouzu, Shigeyuki Yokoyama, So Iwata, Yoshimi Kakinuma and Takeshi Murata
- Journal Title
  
  SpringerPlus
  
  Volume: 2 Pages: 689-689
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370047
[Journal Article] Biochemical and biophysical properties of interactions between subunits of the peripheral stalk region of human V-ATPase2013
- Author(s)
  Suhaila Rahman, Ichiro Yamato, Shinya Saijo, Kenji Mizutani, Yoshiko Ishizuka-Katsura, Noboru Ohsawa, Takaho Terada, Mikako Shirouzu, Shigeyuki Yokoyama, So Iwata and Takeshi Murata
- Journal Title
  
  PLoS ONE
  
  Volume: 8 Issue: 2 Pages: e55704-e55704
- DOI
  10.1371/journal.pone.0055704
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370047, KAKENHI-PUBLICLY-23118705
[Journal Article] Loose Binding of the DF Axis with the A 3B3 Complex Stimulates the Initial Activity of Enterococcus hirae V 1-ATPase2013
- Author(s)
  Md. Jahangir Alam, Satoshi Arai, Shinya Saijo, Kano Suzuki, Kenji Mizutani, Yoshiko Ishizuka-Katsura, Noboru Ohsawa, Takaho Terada, Mikako Shirouzu, Shigeyuki Yokoyama, So Iwata, Yoshimi Kakinuma, Ichiro Yamato and Takeshi Murata
- Journal Title
  
  PLoS ONE
  
  Volume: 8 Issue: 9 Pages: e74291-e74291
- DOI
  10.1371/journal.pone.0074291
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370047, KAKENHI-PROJECT-24570162
[Journal Article] Crystal structure of the central axis DF complex of the prokaryotic V-ATPase2011
- Author(s)
  Saijo, S.
- Journal Title
  
  Pioc Natl Acad Sci USA
  
  Volume: 108 Issue: 50 Pages: 19955-19960
- DOI
  10.1073/pnas.1108810108
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570144, KAKENHI-PUBLICLY-23118705, KAKENHI-PROJECT-23370047
[Journal Article] Sarkosyl is a good regeneration reagent for studies on vacuolar-type ATPase subunit interactions in Biacore experiments2011
- Author(s)
  Suhaila Rahman, Satoshi Arai, Shinya Saijo, Ichiro Yamato, and Takeshi Murata
- Journal Title
  
  Anali. Biochem
  
  Volume: 418 Issue: 2 Pages: 301-303
- DOI
  10.1016/j.ab.2011.07.009
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370047
[Journal Article] Interference, fluctuation, and alternation of electron tunneling in protein media. 1.2005
- Author(s)
  Nishioka H, Kimura A, Yamato T, Kawatsu T, Kakitani T
- Journal Title
  
  JOURNAL OF PHYSICAL CHEMISTRY B 109(5)
  
  Pages: 1978-1987
- Data Source
  KAKENHI-PROJECT-12208005
[Journal Article] Torsion potential works in rhodopsin2004
- Author(s)
  A.Yamada, T.Yamato, T.Kakitani, S.Yamamoto
- Journal Title
  
  PHOTOCHEMISTRY AND PHOTOBIOLOGY 79(5)
  
  Pages: 476-486
- NAID
  110001158378
- Data Source
  KAKENHI-PROJECT-12208005
[Journal Article] A new implicit solvent model for Brownian dynamics simulation : Solvent-accessible surface area dependent effective charge model2004
- Author(s)
  Tadashi Ando, Toshiyuki Meguro, Ichiro Yamato
- Journal Title
  
  J.Comput.Chem., Jpn. 3
  
  Pages: 129-136
- NAID
  130000056836
- Data Source
  KAKENHI-PROJECT-12208005
[Journal Article] Identification of nucleotide binding sites in V-type Na^<+-> ATPase from Enterococcus hirae2004
- Author(s)
  Toshiaki Hosaka, Takeshi Murata, Yoshimi Kakinuma, Ichiro Yamato
- Journal Title
  
  Biosci.Biotechnol.Biochem. 68
  
  Pages: 293-299
- NAID
  130000030837
- Data Source
  KAKENHI-PROJECT-12208005
[Journal Article] Role of protein in the primary step of the photoreaction of yellow protein2004
- Author(s)
  A.Yamada, T.Ishikura, T.Yamato
- Journal Title
  
  PROTEINS : Structure, Function and Bioinformatics 55(4)
  
  Pages: 1063-1069
- Data Source
  KAKENHI-PROJECT-12208005
[Journal Article] Enzymatic hydrolysis of α-and β-oligo(L-aspartic acid)s by poly(aspartic acid) hydrolases-1 and 2 from Sphingomonas sp.KT-12004
- Author(s)
  Tomohiro Hiraishi, Mariko Kajiyama, Ichiro Yamato, Yoshiharu Doi
- Journal Title
  
  Macromolecular Bioscience 4
  
  Pages: 330-339
- Data Source
  KAKENHI-PROJECT-12208005
[Journal Article] Direct measure of functional importance visualized atom-by-atom for photoactive yellow protein.2004
- Author(s)
  A.Yamada, T.Ishikura, T.Yamato
- Journal Title
  
  PROTEINS : Structure, Function and Bioinformatics 55(4)
  
  Pages: 1070-1077
- Data Source
  KAKENHI-PROJECT-12208005
[Patent] 化合物の立体構造探索プログラム、立体構造探索装置、及び立体構造探索方法2003
- Inventor(s)
  目黒俊幸, 山登一郎
- Patent Publication Number
  2003-206246
- Filing Date
  2003-07-22
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12208005
[Patent] クラスIコラーゲナーゼ遺伝子2000
- Inventor(s)
  保坂俊彰, 山登一郎
- Industrial Property Rights Holder
  山登一郎
- Acquisition Date
  2000-05-03
- Data Source
  KAKENHI-PROJECT-12208005

1. MURATA Takeshi (80415322)

# of Collaborated Projects: 3 results

# of Collaborated Products: 7 results
2. MEGURO Toshiyuki (20287478)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
3. MIZUTANI Kenji (10525570)

# of Collaborated Projects: 2 results

# of Collaborated Products: 5 results
4. SAIJO Shinya (80419001)

# of Collaborated Projects: 1 results

# of Collaborated Products: 6 results
5. KAKINUMA Yoshimi (80134394)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. MITAKU Shigeki (10107542)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. SONOYAMA Masashi (40242242)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. YAMATO Takahisa (90251587)

# of Collaborated Projects: 1 results

# of Collaborated Products: 7 results
9. ANRAKU Yasuhiro (20012643)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. OHSUMI Yoshinori (30114416)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 溝口文雄 (50084463)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. 大和田勇人 (30203954)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 野地博行

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
14. 宗行英朗

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

YAMATO Ichiro 山登 一郎

山登 一郎 ヤマト イチロウ

Research Projects

Research Products

Co-Researchers

Molecular mechanism of the structural formation and functional regulation of the V1 rotary motor

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Structural basis of ATP hydrolysis mechanism of V1-ATPase motor

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

腸内連鎖球菌ナトリウム輸送性V型ATPアーゼの分子機構の解明

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Prediction and Analysis for Structure and Function of Membrane Proteins

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

エージェント型データマイニングに基づく知識発見法の開発と応用

Principal Investigator

Project Period (FY)

Research Category

Research Institution

Structure and function of NaィイD1+ィエD1-translocating V-type ATPasePrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

二次性能動輸送タンパク質の共役イオン結合部位の構造Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Institution

チャンネルタンパク質内イオン透過機構の研究Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

二次性能動輸送タンパク質の共役イオン結合部位の構造の研究Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Institution

能動輸送タンパク質のエネルギー共役機構Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

二次性能動輸送系の遂次結合型エネルギー共役機構の熱力学Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Institution

Study of Transport Mechanism of Secondary Active Transport ProteinsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Biochemical Studies on <H^+> -ATPase and <Ca^(2+)> / <H^+> antiporter on the Yeast Vacuolar Membranes

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] Function and Regulation of Mammalian V-ATPase Isoforms, Regulation of Ca2+-ATPase, V-ATPases and F-ATPases, Advances in Biochemistry in Health and Disease 142016

YAMATO Ichiro 山登一郎

山登一郎ヤマトイチロウ