Ichinose Natsuhiro 市瀬夏洋

… Alternative Names

市瀬夏洋イチノセナツヒロ

ICHINOSE Natsuhiro 市瀬夏洋

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Researcher Number	70302750
Other IDs
External Links
Affiliation (Current)	2025: 京都女子大学, データサイエンス学部, 教授 2025: 京都大学, 情報学研究科, 特定准教授
Affiliation (based on the past Project Information) *help	2025: 京都女子大学, データサイエンス学部, 教授 2023: 京都女子大学, データサイエンス学部, 教授 2021 – 2023: 京都大学, 情報学研究科, 特定准教授 2015 – 2020: 京都大学, 情報学研究科, 助教 2012: 京都大学, 情報研究科, 助教 … More 2008 – 2012: Kyoto University, 情報学研究科, 助教 2003 – 2004: 京都大学, 情報学研究科, 助手 2003: 京都大学, 大学院・情報学研究科, 助手 2001 – 2002: 東京大学, 医科学研究所, 助手 2000: 東京大学, 大学院・新領域創成科学研究科, 助手 Less
Review Section/Research Field	Principal Investigator Basic Section 61040:Soft computing-related / Biological Sciences / ゲノム情報科学 / 情報通信工学 Except Principal Investigator Medium-sized Section 60:Information science, computer engineering, and related fields / Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields / Constructive Systems Biology / 基礎ゲノム科学 / System genome science / Engineering fundamentals
Keywords	Principal Investigator 遺伝子ネットワーク / ロバスト性 / 汎化 / 機械学習 / ロバスト性評価法 / 概念形成 / リカレントネットワーク / ニューラルネットワーク / ネットワークロバスト性 / S-system … More / genome switching network / 3D visualization / genetic programming / genetic algorithms / non-linear dynamics / evolutionary computation / gene regulatory network / 数理モデリング / 分岐理論 / ネットワーク再構成 / 非線形力学系 / 非線形ダイナミクス / 人工遺伝子ネットワーク / 分岐解析 / 安定性解析 / 非線型ダイナミクス / DNAマイクロアレイ / 摂動 / ゆらぎ / ネットワーク推定 / 対話型進化論的手法 / 進化論的計算手法 / 遺伝的プログラミング / 遺伝的アルゴリズム / 転写制御 / ゲノム / 生体生命情報学 / 決定論的相関 / 決定論性 / スパイク重畳 / 非同期型神経回路 / コインシデンス・ディテクタ / 複合通信 / スパイク列 / 神経回路網モデル … More Except Principal Investigator 新規細胞タイプ / ウニ / ヒトデ / 遺伝子ネットワーク / 棘皮動物 / 遺伝子制御ネットワーク / 6 / Smc5 / ChIP-chip / ゲノム / 記号論理 / 演繹推論 / ニューラルネットワーク / 機械学習 / 非モデル生物 / 新奇遺伝子 / 変異ロバスト性 / 発生学的浮動 / 遺伝子調節ネットワーク / 進化 / プロモーター / 新規細胞 / 発生進化 / 発生の頑健性 / 遺伝子発現ネットワーク / 個体変異 / 柔軟性 / ネットワーク / 転写制御ネットワーク / 砂時計モデル / 新規遺伝子 / SPILE遺伝子群 / 幼生骨片 / 発生システム浮動 / ネットワーク理論 / 軟体動物 / 形態進化 / chromatin immuno-precipitation / DNA chip / chromosome / cell cycle / cohesin / DNA array / 染色体分配 / 染色体複製 / DNAchip / 染色体代謝 / ゲノム解析 / レプリコン構造 / 複製制御 / 染色体動態 / 染色体構造 / 染色体免疫沈降 / DNAチップ / 染色体 / 細胞周期 / コヒーシン / DNAアレイ / 生物進化 / 選択的スプライシング / 遺伝子発見 / アライメント / 配列比較 / アセスメント / アルゴリズム / スプライシング / 比較ゲノム / RNA-Seq / アラインメント / 次世代シークエンサー / 多様性 / カオス / 反復関数系 / 差分微分代数方程式 / 数理モデル / 画像データ / 形態 / 昆虫 Less

Transformerの演繹推論能力の解明と説明可能なAIへの応用
- Principal Investigator
  
  山本章博
- Project Period (FY)
  2025 – 2029
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 60:Information science, computer engineering, and related fields
- Research Institution
  Kyoto University
Generalization of machine learning based on mutational robustness and homeostasis of gene regulatory networksPrincipal Investigator
- Principal Investigator
  
  市瀬夏洋
- Project Period (FY)
  2021 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 61040:Soft computing-related
- Research Institution
  Kyoto Women's University
  Kyoto University
Evolution of the novel cell types from the aspect of the complex network
- Principal Investigator
  
  Wada Hiroshi
- Project Period (FY)
  2018 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
- Research Institution
  University of Tsukuba
Robustness, flexibility and phase transitions of the gene regulatory network.
- Principal Investigator
  
  Wada Hiroshi
- Project Period (FY)
  2015 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Constructive Systems Biology
- Research Institution
  University of Tsukuba
Development of novel methods for sequence comparison in the era of massive DNA sequencing data
- Principal Investigator
  
  GOTOH Osamu
- Project Period (FY)
  2010 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  System genome science
- Research Institution
  National Institute of Advanced Industrial Science and Technology
  Kyoto University
転写制御の符号論的理解Principal Investigator
- Principal Investigator
  
  市瀬夏洋
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  ゲノム情報科学
- Research Institution
  Kyoto University
The systematic approach for the understanding of dynamic aspects of chromosome VI of S.cerevisiae
- Principal Investigator
  
  SHIRAHIGE Katsuhiko
- Project Period (FY)
  2003 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  Tokyo Institute of Technology
  The Institute of Physical and Chemical Research
神経回路網を基にしたスパイク列による複合通信に関する研究Principal Investigator
- Principal Investigator
  
  市瀬夏洋
- Project Period (FY)
  2000 – 2001
- Research Category
  
  Grant-in-Aid for Encouragement of Young Scientists (A)
- Research Field
  
  情報通信工学
- Research Institution
  The University of Tokyo
昆虫の複雑形態の多様性に関する画像解析と数理モデル化
- Principal Investigator
  
  AIHARA Kazuyuki
- Project Period (FY)
  2000 – 2001
- Research Category
  
  Grant-in-Aid for Exploratory Research
- Research Field
  
  Engineering fundamentals
- Research Institution
  The University of Tokyo
No-linear systematic understanding of genome-protein dynamicsPrincipal Investigator
- Principal Investigator
  
  IBA Hitoshi, 市瀬夏洋
- Project Period (FY)
  2000 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo

All 2021 2018 2017 2012 2010 2008

All Journal Article Presentation

[Journal Article] Dynamical robustness and its structural dependence in biological networks2021
- Author(s)
  Ichinose N, Kawashima T, Yada T, Wada H
- Journal Title
  
  J Theor Biol
  
  Volume: 526 Pages: 110808-110808
- DOI
  10.1016/j.jtbi.2021.110808
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H03335, KAKENHI-PROJECT-18H04004
[Journal Article] Quasiperiodic-Chaotic Neural Networks and Short-Term Analog Memory.2021
- Author(s)
  N. Ichinose
- Journal Title
  
  Int. J. Bifurc. Chaos
  
  Volume: 31 Issue: 01 Pages: 1-18
- DOI
  10.1142/s0218127421300032
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H04004
[Journal Article] Asymmetry in indegree and outdegree distributions of gene regulatory networks arising from dynamical robustness2018
- Author(s)
  Natsuhiro Ichinose, Tetsushi Yada, and Hiroshi Wada
- Journal Title
  
  Phys. Rev. E
  
  Volume: 97 Issue: 6 Pages: 062315-062315
- DOI
  10.1103/physreve.97.062315
- NAID
  120007133990
- Data Source
  KAKENHI-PROJECT-15KT0074
[Journal Article] Estimating optimal sparseness of developmental gene networks using a semi-quantitative model.2017
- Author(s)
  Ichinose N, Yada T, Wada H.
- Journal Title
  
  PLoS One
  
  Volume: 12 Issue: 4 Pages: e0176492-e0176492
- DOI
  10.1371/journal.pone.0176492
- NAID
  120006309309
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-15H01358, KAKENHI-PROJECT-15KT0074
[Journal Article] Identification of a new clock-related element EL-box involved in circadian regulation by BMAL1/CLOCK and HES12012
- Author(s)
  Ueshima, T., Kawamoto, T., Honda, K.K, Noshiro, M., Fujimoto, K., Nakao, S., Ichinose, N., Hashimoto, S., Gotoh, O., Kato, Y
- Journal Title
  
  Gene
  
  Volume: 510 (2) Issue: 2 Pages: 118-125
- DOI
  10.1016/j.gene.2012.08.022
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22310124, KAKENHI-PROJECT-22590223, KAKENHI-PROJECT-22592067, KAKENHI-PROJECT-22592068
[Journal Article] Large-scale motif discovery using DNA Gray code and equiprobable oligomers2012
- Author(s)
  Ichinose,N., Yada,T.,Gotoh,O.
- Journal Title
  
  Bioinform
  
  Volume: 28 Issue: 1 Pages: 25-31
- DOI
  10.1093/bioinformatics/btr606
- NAID
  120004873969
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240032, KAKENHI-PROJECT-22310124, KAKENHI-PROJECT-221S0002
[Journal Article] Reconstruction of transcription-translation dynamics with a model of gene networks2008
- Author(s)
  N. Ichinose, T. Yada, O. Gotoh, K. Aihara
- Journal Title
  
  Journal of Theoretical Biology 255(4)
  
  Pages: 378-386
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20651053
[Presentation] Detection of splice junctions from mid-to-long RNA-seq reads by Spaln2012
- Author(s)
  Zeng, C., Iwata, H., Ichinose, N., Yata, T., Gotoh, O
- Organizer
  GIW 2012
- Place of Presentation
  National Cheng Kung University, Tainan, Taiwan
- Data Source
  KAKENHI-PROJECT-22310124
[Presentation] Memory Management of Pairwise Alignment Using Garbage Collection2010
- Author(s)
  Ichinose, N., Yada, T. and Gotoh, O
- Organizer
  JSBi
- Place of Presentation
  九州大学医学部百年講堂,, Fukuoka(福岡県)
- Data Source
  KAKENHI-PROJECT-22310124
[Presentation] Memory management of pairwise alignment using garbage collection2010
- Author(s)
  市瀬夏洋、矢田哲士、後藤修
- Organizer
  The 2010 annual conference of the Japanese society for bioinformatics
- Place of Presentation
  九州
- Year and Date
  2010-12-13
- Data Source
  KAKENHI-PROJECT-20651053
[Presentation] Memory Management of Pairwise Alignment Using Garbage Collection2010
- Author(s)
  Ichinose, N., Yada, T., Gotoh O.
- Organizer
  the 2010 Annual Conference of the Japanese Society for Bioinformatics
- Place of Presentation
  Fukuoka
- Year and Date
  2010-12-14
- Data Source
  KAKENHI-PROJECT-22310124
[Presentation] DNA Gray Code on Regular Polyhedra2008
- Author(s)
  N. Ichinose, T. Yada, O. Gotoh
- Organizer
  2008 Annual Conference of the Japanese Society for Bioinformatics
- Place of Presentation
  大阪
- Year and Date
  2008-12-15
- Data Source
  KAKENHI-PROJECT-20651053

1. 矢田哲士 (10322728)

# of Collaborated Projects: 3 results

# of Collaborated Products: 4 results
2. AIHARA Kazuyuki (40167218)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
3. IBA Hitoshi (40302773)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. Wada Hiroshi (60303806)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
5. GOTOH Osamu (40142111)

# of Collaborated Projects: 1 results

# of Collaborated Products: 4 results
6. CHEN Lounan (20298813)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. SHIRAHIGE Katsuhiko (90273854)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. 坂東優篤 (90360627)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 野口英樹 (50333349)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 川島武士 (10378531)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 山本章博 (30230535)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. 佐藤健 (00271635)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 杉山麿人 (10733876)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. 大久保好章 (40271639)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 伊藤公人 (60396314)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. 明石望洋 (90973553)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Ichinose Natsuhiro 市瀬 夏洋

市瀬 夏洋 イチノセ ナツヒロ

ICHINOSE Natsuhiro 市瀬 夏洋

Research Projects

Research Products

Co-Researchers

Transformerの演繹推論能力の解明と説明可能なAIへの応用

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Generalization of machine learning based on mutational robustness and homeostasis of gene regulatory networksPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Evolution of the novel cell types from the aspect of the complex network

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Robustness, flexibility and phase transitions of the gene regulatory network.

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Development of novel methods for sequence comparison in the era of massive DNA sequencing data

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

転写制御の符号論的理解Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

The systematic approach for the understanding of dynamic aspects of chromosome VI of S.cerevisiae

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

神経回路網を基にしたスパイク列による複合通信に関する研究Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

昆虫の複雑形態の多様性に関する画像解析と数理モデル化

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

No-linear systematic understanding of genome-protein dynamicsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Dynamical robustness and its structural dependence in biological networks2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Quasiperiodic-Chaotic Neural Networks and Short-Term Analog Memory.2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Asymmetry in indegree and outdegree distributions of gene regulatory networks arising from dynamical robustness2018

Author(s)

Journal Title

DOI

Ichinose Natsuhiro 市瀬夏洋

市瀬夏洋イチノセナツヒロ

ICHINOSE Natsuhiro 市瀬夏洋