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Ichinose Natsuhiro  市瀬 夏洋

ORCIDConnect your ORCID iD *help
… Alternative Names

市瀬 夏洋  イチノセ ナツヒロ

ICHINOSE Natsuhiro  市瀬 夏洋

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Researcher Number 70302750
Other IDs
External Links
Affiliation (Current) 2025: 京都女子大学, データサイエンス学部, 教授
2025: 京都大学, 情報学研究科, 特定准教授
Affiliation (based on the past Project Information) *help 2023: 京都女子大学, データサイエンス学部, 教授
2021 – 2023: 京都大学, 情報学研究科, 特定准教授
2015 – 2020: 京都大学, 情報学研究科, 助教
2012: 京都大学, 情報研究科, 助教
2008 – 2012: Kyoto University, 情報学研究科, 助教 … More
2003 – 2004: 京都大学, 情報学研究科, 助手
2003: 京都大学, 大学院・情報学研究科, 助手
2001 – 2002: 東京大学, 医科学研究所, 助手
2000: 東京大学, 大学院・新領域創成科学研究科, 助手 Less
Review Section/Research Field
Principal Investigator
Basic Section 61040:Soft computing-related / Biological Sciences / ゲノム情報科学 / 情報通信工学
Except Principal Investigator
Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields / Constructive Systems Biology / 基礎ゲノム科学 / System genome science / Engineering fundamentals
Keywords
Principal Investigator
遺伝子ネットワーク / ロバスト性 / 汎化 / 機械学習 / ロバスト性評価法 / 概念形成 / リカレントネットワーク / ニューラルネットワーク / ネットワークロバスト性 / S-system … More / genome switching network / 3D visualization / genetic programming / genetic algorithms / non-linear dynamics / evolutionary computation / gene regulatory network / 数理モデリング / 分岐理論 / ネットワーク再構成 / 非線形力学系 / 非線形ダイナミクス / 人工遺伝子ネットワーク / 分岐解析 / 安定性解析 / 非線型ダイナミクス / DNAマイクロアレイ / 摂動 / ゆらぎ / ネットワーク推定 / 対話型進化論的手法 / 進化論的計算手法 / 遺伝的プログラミング / 遺伝的アルゴリズム / 転写制御 / ゲノム / 生体生命情報学 / 決定論的相関 / 決定論性 / スパイク重畳 / 非同期型神経回路 / コインシデンス・ディテクタ / 複合通信 / スパイク列 / 神経回路網モデル … More
Except Principal Investigator
新規細胞タイプ / ウニ / ヒトデ / 遺伝子ネットワーク / 棘皮動物 / 遺伝子制御ネットワーク / 6 / Smc5 / ChIP-chip / ゲノム / 非モデル生物 / 新奇遺伝子 / 変異ロバスト性 / 発生学的浮動 / 遺伝子調節ネットワーク / 進化 / プロモーター / 新規細胞 / 発生進化 / 発生の頑健性 / 遺伝子発現ネットワーク / 個体変異 / 柔軟性 / ネットワーク / 転写制御ネットワーク / 砂時計モデル / 新規遺伝子 / SPILE遺伝子群 / 幼生骨片 / 発生システム浮動 / ネットワーク理論 / 軟体動物 / 形態進化 / chromatin immuno-precipitation / DNA chip / chromosome / cell cycle / cohesin / DNA array / 染色体分配 / 染色体複製 / DNAchip / 染色体代謝 / ゲノム解析 / レプリコン構造 / 複製制御 / 染色体動態 / 染色体構造 / 染色体免疫沈降 / DNAチップ / 染色体 / 細胞周期 / コヒーシン / DNAアレイ / 生物進化 / 選択的スプライシング / 遺伝子発見 / アライメント / 配列比較 / アセスメント / アルゴリズム / スプライシング / 比較ゲノム / RNA-Seq / アラインメント / 次世代シークエンサー / 多様性 / カオス / 反復関数系 / 差分微分代数方程式 / 数理モデル / 画像データ / 形態 / 昆虫 Less
  • Research Projects

    (9 results)
  • Research Products

    (12 results)
  • Co-Researchers

    (10 People)
  •  Generalization of machine learning based on mutational robustness and homeostasis of gene regulatory networksPrincipal Investigator

    • Principal Investigator
      市瀬 夏洋
    • Project Period (FY)
      2021 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 61040:Soft computing-related
    • Research Institution
      Kyoto Women's University
      Kyoto University
  •  Evolution of the novel cell types from the aspect of the complex network

    • Principal Investigator
      Wada Hiroshi
    • Project Period (FY)
      2018 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
    • Research Institution
      University of Tsukuba
  •  Robustness, flexibility and phase transitions of the gene regulatory network.

    • Principal Investigator
      Wada Hiroshi
    • Project Period (FY)
      2015 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Constructive Systems Biology
    • Research Institution
      University of Tsukuba
  •  Development of novel methods for sequence comparison in the era of massive DNA sequencing data

    • Principal Investigator
      GOTOH Osamu
    • Project Period (FY)
      2010 – 2012
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      System genome science
    • Research Institution
      National Institute of Advanced Industrial Science and Technology
      Kyoto University
  •  転写制御の符号論的理解Principal Investigator

    • Principal Investigator
      市瀬 夏洋
    • Project Period (FY)
      2008 – 2010
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      ゲノム情報科学
    • Research Institution
      Kyoto University
  •  The systematic approach for the understanding of dynamic aspects of chromosome VI of S.cerevisiae

    • Principal Investigator
      SHIRAHIGE Katsuhiko
    • Project Period (FY)
      2003 – 2005
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      基礎ゲノム科学
    • Research Institution
      Tokyo Institute of Technology
      The Institute of Physical and Chemical Research
  •  神経回路網を基にしたスパイク列による複合通信に関する研究Principal Investigator

    • Principal Investigator
      市瀬 夏洋
    • Project Period (FY)
      2000 – 2001
    • Research Category
      Grant-in-Aid for Encouragement of Young Scientists (A)
    • Research Field
      情報通信工学
    • Research Institution
      The University of Tokyo
  •  昆虫の複雑形態の多様性に関する画像解析と数理モデル化

    • Principal Investigator
      AIHARA Kazuyuki
    • Project Period (FY)
      2000 – 2001
    • Research Category
      Grant-in-Aid for Exploratory Research
    • Research Field
      Engineering fundamentals
    • Research Institution
      The University of Tokyo
  •  No-linear systematic understanding of genome-protein dynamicsPrincipal Investigator

    • Principal Investigator
      IBA Hitoshi, 市瀬 夏洋
    • Project Period (FY)
      2000 – 2004
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      The University of Tokyo

All 2021 2018 2017 2012 2010 2008

All Journal Article Presentation

  • [Journal Article] Dynamical robustness and its structural dependence in biological networks2021

    • Author(s)
      Ichinose N, Kawashima T, Yada T, Wada H
    • Journal Title

      J Theor Biol

      Volume: 526 Pages: 110808-110808

    • DOI

      10.1016/j.jtbi.2021.110808

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H03335, KAKENHI-PROJECT-18H04004
  • [Journal Article] Quasiperiodic-Chaotic Neural Networks and Short-Term Analog Memory.2021

    • Author(s)
      N. Ichinose
    • Journal Title

      Int. J. Bifurc. Chaos

      Volume: 31 Issue: 01 Pages: 1-18

    • DOI

      10.1142/s0218127421300032

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H04004
  • [Journal Article] Asymmetry in indegree and outdegree distributions of gene regulatory networks arising from dynamical robustness2018

    • Author(s)
      Natsuhiro Ichinose, Tetsushi Yada, and Hiroshi Wada
    • Journal Title

      Phys. Rev. E

      Volume: 97 Issue: 6 Pages: 062315-062315

    • DOI

      10.1103/physreve.97.062315

    • NAID

      120007133990

    • Data Source
      KAKENHI-PROJECT-15KT0074
  • [Journal Article] Estimating optimal sparseness of developmental gene networks using a semi-quantitative model.2017

    • Author(s)
      Ichinose N, Yada T, Wada H.
    • Journal Title

      PLoS One

      Volume: 12 Issue: 4 Pages: e0176492-e0176492

    • DOI

      10.1371/journal.pone.0176492

    • NAID

      120006309309

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PUBLICLY-15H01358, KAKENHI-PROJECT-15KT0074
  • [Journal Article] Identification of a new clock-related element EL-box involved in circadian regulation by BMAL1/CLOCK and HES12012

    • Author(s)
      Ueshima, T., Kawamoto, T., Honda, K.K, Noshiro, M., Fujimoto, K., Nakao, S., Ichinose, N., Hashimoto, S., Gotoh, O., Kato, Y
    • Journal Title

      Gene

      Volume: 510 (2) Issue: 2 Pages: 118-125

    • DOI

      10.1016/j.gene.2012.08.022

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310124, KAKENHI-PROJECT-22590223, KAKENHI-PROJECT-22592067, KAKENHI-PROJECT-22592068
  • [Journal Article] Large-scale motif discovery using DNA Gray code and equiprobable oligomers2012

    • Author(s)
      Ichinose,N., Yada,T.,Gotoh,O.
    • Journal Title

      Bioinform

      Volume: 28 Issue: 1 Pages: 25-31

    • DOI

      10.1093/bioinformatics/btr606

    • NAID

      120004873969

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22240032, KAKENHI-PROJECT-22310124, KAKENHI-PROJECT-221S0002
  • [Journal Article] Reconstruction of transcription-translation dynamics with a model of gene networks2008

    • Author(s)
      N. Ichinose, T. Yada, O. Gotoh, K. Aihara
    • Journal Title

      Journal of Theoretical Biology 255(4)

      Pages: 378-386

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20651053
  • [Presentation] Detection of splice junctions from mid-to-long RNA-seq reads by Spaln2012

    • Author(s)
      Zeng, C., Iwata, H., Ichinose, N., Yata, T., Gotoh, O
    • Organizer
      GIW 2012
    • Place of Presentation
      National Cheng Kung University, Tainan, Taiwan
    • Data Source
      KAKENHI-PROJECT-22310124
  • [Presentation] Memory Management of Pairwise Alignment Using Garbage Collection2010

    • Author(s)
      Ichinose, N., Yada, T. and Gotoh, O
    • Organizer
      JSBi
    • Place of Presentation
      九州大学医学部百年講堂,, Fukuoka(福岡県)
    • Data Source
      KAKENHI-PROJECT-22310124
  • [Presentation] Memory management of pairwise alignment using garbage collection2010

    • Author(s)
      市瀬夏洋、矢田哲士、後藤修
    • Organizer
      The 2010 annual conference of the Japanese society for bioinformatics
    • Place of Presentation
      九州
    • Year and Date
      2010-12-13
    • Data Source
      KAKENHI-PROJECT-20651053
  • [Presentation] Memory Management of Pairwise Alignment Using Garbage Collection2010

    • Author(s)
      Ichinose, N., Yada, T., Gotoh O.
    • Organizer
      the 2010 Annual Conference of the Japanese Society for Bioinformatics
    • Place of Presentation
      Fukuoka
    • Year and Date
      2010-12-14
    • Data Source
      KAKENHI-PROJECT-22310124
  • [Presentation] DNA Gray Code on Regular Polyhedra2008

    • Author(s)
      N. Ichinose, T. Yada, O. Gotoh
    • Organizer
      2008 Annual Conference of the Japanese Society for Bioinformatics
    • Place of Presentation
      大阪
    • Year and Date
      2008-12-15
    • Data Source
      KAKENHI-PROJECT-20651053
  • 1.  矢田 哲士 (10322728)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 4 results
  • 2.  AIHARA Kazuyuki (40167218)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 0 results
  • 3.  IBA Hitoshi (40302773)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 0 results
  • 4.  Wada Hiroshi (60303806)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 1 results
  • 5.  GOTOH Osamu (40142111)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 4 results
  • 6.  CHEN Lounan (20298813)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 7.  SHIRAHIGE Katsuhiko (90273854)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 8.  坂東 優篤 (90360627)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 9.  野口 英樹 (50333349)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 10.  川島 武士 (10378531)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results

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