Taneda Akito 種田晃人

… Alternative Names

TANEDA Akito 種田晃人

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Researcher Number	70332492
Other IDs
Affiliation (Current)	2025: 弘前大学, 理工学研究科, 准教授
Affiliation (based on the past Project Information) *help	2025: 弘前大学, 理工学研究科, 准教授 2011 – 2023: 弘前大学, 理工学研究科, 准教授 2012: 弘前大学, 理工学研究科, 講師 2011: 弘前大学, 大学院・理工学研究科, 准教授 2010: 弘前大学, 大学院・理工学研究科, 助教 … More 2008: Hirosaki University, 大学院・工学研究科, 助教 2008: 弘前大学, 理工学研究科, 助教 2007 – 2008: 弘前大学, 大学院・理工学研究科, 助教 2007: Hirosaki University, 大学院・理工学研究科, 助教 2005 – 2006: 弘前大学, 理工学部, 助手 Less
Review Section/Research Field	Principal Investigator Bioinformatics/Life informatics / Basic Section 62010:Life, health and medical informatics-related / Life / Health / Medical informatics Except Principal Investigator Plant pathology / Pediatrics / Plant protection science
Keywords	Principal Investigator RNA二次構造 / RNAスイッチ / バイオインフォマティクス / 遺伝子 / ゲノム / RNA / 生体生命情報学 / エネルギーランドスケープ / 転写中フォールディング / メタヒューリスティクス … More / エネルギーバリア予測 / RNA折り畳み経路予測 / ヒューリスティクス / ソフトコンピューティング / RNA工学 / 二次構造 / 遺伝的アルゴリズム / マスター方程式 / アントコロニー最適化 / 群知能 / エネルギーバリアー予測 / RNA-RNA間相互作用 / 配列設計 / シュードノット構造 / エネルギー地平 / 合成RNA生物学 / RNA情報学 / 合成生物学 / 折り畳み経路 / RNA間相互作用 / 分子設計 / エネルギーバリア / 核酸配列設計 / 機能性RNA / 人工リボスイッチ / 多目的最適化 / 進化的計算 / 自由エネルギー最小化 / 二次構造予測 / シュードノット … More Except Principal Investigator RNAサイレンシング / ウイロイド / マイクロRNA / siRNAシークエンス / ノンコーディングRNA / リボゾーム・タンパク / GATA1 / リボソームタンパク質 / TP53 / ダイアモンド・ブラックファン貧血 / 赤血球造血 / 形質転換トマト / RDR6 / AGO2 / ジベレリンβ水酸化酵素 / 環状RNA / 遺伝子発現ネットワーク / CCS1 / SOD1 / miR398a-3p / DCL4 / DCL2 / ヘアピンRNA / ウイロイド特異的スモールRNA / ウイロイド抵抗性 / スモールRNA / 非コードRNA / 病原性 / 抵抗性 / バイオインフォマティクス / 次世代シークエンス解析 / マクロアレイ診断 / 微生物多様性 / 病害抑制 / リンゴ葉圏微生物 / 病害虫発生抑制 / 自然栽培 / 大規模塩基配列解析 / 根圏微生物 / 葉圏微生物 / CHS / Cofolgaアルゴリズム / カルコン合成酵素遺伝子 / RNA共通二次構造予測 / 遺伝的アルゴリズム / RNA2次構造予測 / siRNA / RNAサイレンシンダ Less

共転写フォールディングの粗視化シミュレーションにより得られるRNA二次構造の評価Principal Investigator
- Principal Investigator
  
  種田晃人
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Hirosaki University
タンデム接続されたRNAスイッチのリガンド結合ダイナミクスシミュレーションPrincipal Investigator
- Principal Investigator
  
  種田晃人
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Hirosaki University
RNA secondary structure dynamics simulation including pseudoknotsPrincipal Investigator
- Principal Investigator
  
  Taneda Akito
- Project Period (FY)
  2018 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Hirosaki University
Elucidation of the pathogenesis of diamond-blackfan anemia and identification of novel therapeutic targets
- Principal Investigator
  
  Toki Tsutomu
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Pediatrics
- Research Institution
  Hirosaki University
Computational RNA switch design for artificial RNA circuitsPrincipal Investigator
- Principal Investigator
  
  Akito Taneda
- Project Period (FY)
  2015 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Hirosaki University
Pathogenicity of viroid - circular RNA pathogen; Analysis of destructive effects of viroid infection on a host miRNA/gene expression network
- Principal Investigator
  
  SANO Teruo
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Plant protection science
- Research Institution
  Hirosaki University
Analysis of cultivar- and tissue-specific biogenesis of viroid-specific small RNA in relation to viroid pathogenicity
- Principal Investigator
  
  SANO Teruo
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Plant pathology
- Research Institution
  Hirosaki University
Bioinformatic study on functional RNAs with a conformational changePrincipal Investigator
- Principal Investigator
  
  TANEDA Akito
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Hirosaki University
Large scale sequencing analysis of microbial diversity in phyllo-and rhizo-sphares of apple trees for investigation of the mechanism to acquire natural immunity under natural farming practices
- Principal Investigator
  
  SANO Teruo
- Project Period (FY)
  2010 – 2011
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Plant pathology
- Research Institution
  Hirosaki University
RNA interactome prediction in eukaryotic genomesPrincipal Investigator
- Principal Investigator
  
  TANEDA Akito
- Project Period (FY)
  2010 – 2011
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Hirosaki University
Genome scale prediction of eukaryotic pseudoknotted non-coding RNAsPrincipal Investigator
- Principal Investigator
  
  TANEDA Akito
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Hirosaki University
Molecular mechanisms of replication and pathogenicity of viroid -non-coding RNA pathogen
- Principal Investigator
  
  SANO Teruo
- Project Period (FY)
  2006 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Plant pathology
- Research Institution
  Hirosaki University
ペアワイズ比較ゲノムによる新規非翻訳RNAの探索Principal Investigator
- Principal Investigator
  
  種田晃人
- Project Period (FY)
  2005 – 2006
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Hirosaki University

[Journal Article] A Web Server for Designing Molecular Switches Composed of Two Interacting RNAs2021
- Author(s)
  Taneda Akito、Sato Kengo
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 22 Issue: 5 Pages: 2720-2720
- DOI
  10.3390/ijms22052720
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K11519, KAKENHI-PROJECT-19K22897, KAKENHI-PROJECT-19H04210
[Journal Article] Ant colony optimization for predicting RNA folding pathways2019
- Author(s)
  Takitou Seira、Taneda Akito
- Journal Title
  
  Computational Biology and Chemistry
  
  Volume: 83 Pages: 107118-107118
- DOI
  10.1016/j.compbiolchem.2019.107118
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18K11519
[Journal Article] Characterization of host-dependent mutations of Apple fruit crinkle viroid replicating in newly identified experimental hosts suggests maintenance of stem-loop structures in the left-hand half of the molecule is important for replication2017
- Author(s)
  Suzuki T, Fujibayashi M, Hataya T, Taneda A, He Y-H, Tsushima T, Duraisamy GS, Siglova K, Matousek J, Sano T
- Journal Title
  
  J Gen Virol
  
  Volume: 印刷中
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04455
[Journal Article] Changes in relative expression levels of viroid-specific small RNAs and microRNAs in tomato plants infected with severe and mild symptom-inducing isolates of Potato spindle tuber viroid2015
- Author(s)
  Tsushima D, Adkar-Purushothama CR, Taneda A, Sano T
- Journal Title
  
  Journal of General Plant Pathology
  
  Volume: 81 Pages: 49-62
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-24380026
[Journal Article] Multi-objective genetic algorithm for pseudoknotted RNA sequence design2012
- Author(s)
  Akito Taneda
- Journal Title
  
  Frontiers in Genetics
  
  Volume: 3巻 Pages: 36-36
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700304
[Journal Article] A Web Server for Multi-objective Pairwise RNA Sequence Alignment with an Index for Selecting Accurate Alignments2011
- Author(s)
  Akito Taneda
- Journal Title
  
  IPSJ Transactions on Bioinformatics
  
  Volume: 4巻 Pages: 2-8
- NAID
  130000770573
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700304
[Journal Article] MODENA : a multi-objective RNA inverse folding2011
- Author(s)
  Akito Taneda
- Journal Title
  
  Advances and Applications in Bioinformatics and Chemistry
  
  Volume: 4巻 Pages: 1-12
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700304
[Journal Article] An efficient genetic algorithm for structural RNA pairwise alignment and its application tonon-coding RNA discovery in yeast2008
- Author(s)
  Taneda, A.
- Journal Title
  
  BMC Bioinformatics(doi : 10.1186/1471-2105-9-521) 9
  
  Pages: 20-20
- Data Source
  KAKENHI-PROJECT-18380028
[Journal Article] An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast2008
- Author(s)
  A. Taneda
- Journal Title
  
  BMC Bioinformatics 9
  
  Pages: 521-521
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19700272
[Journal Article] An efficient genetic algorithm for structural RNA pairwise alignment and its annlication to non-coding RNA discovery in yeast2008
- Author(s)
  Taneda, A
- Journal Title
  
  BMC Bioinformatics 9
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18380028
[Journal Article] Pairwise genome comparison for finding functional RNAs with low sequence identity2007
- Author(s)
  A. Taneda
- Journal Title
  
  The Proceedings of the 2007 Annual Conference of the Japanese Society for Bioinformatics
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19700272
[Presentation] RNA二次構造ダイナミクスのシミュレーション2023
- Author(s)
  種田　晃人
- Organizer
  RNAインフォマティクス道場2023
- Data Source
  KAKENHI-PROJECT-22K12254
[Presentation] RNAシュードノット構造を考慮した自由エネルギーランドスケープに関する検討2021
- Author(s)
  種田　晃人
- Organizer
  2021年日本バイオインフォマティクス学会年会・第10回生命医薬情報学連合大会（IIBMP2021
- Data Source
  KAKENHI-PROJECT-18K11519
[Presentation] Ant colony optimization algorithm for predicting RNA folding pathways2018
- Author(s)
  Seira Takitou, Akito Taneda
- Organizer
  The Sixteenth Asia Pacific Bioinformatics Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K00392
[Presentation] トマトのDCL2とDCL4はジャガイモやせいもウイロイド（PSTVd）の初期増殖と病徴発現を抑制する2017
- Author(s)
  池田翔、葛西厚史、種田晃人、奥田真生、鈴木貴大、佐野輝男
- Organizer
  平成29年度日本植物病理学会大会
- Data Source
  KAKENHI-PROJECT-15H04455
[Presentation] リンゴゆず果ウイロイドホップ分離株及びカキ分離株のトマトでの病原性解析2017
- Author(s)
  鈴木貴大、藤林美里、種田晃人、畑谷達児、佐野輝男
- Organizer
  平成29年度日本植物病理学会大会
- Data Source
  KAKENHI-PROJECT-15H04455
[Presentation] Inverse folding of two interacting RNA molecules2016
- Author(s)
  Akito Taneda and Kengo Sato
- Organizer
  第5回生命医薬情報学連合大会
- Place of Presentation
  東京国際交流館プラザ平成
- Year and Date
  2016-09-30
- Data Source
  KAKENHI-PROJECT-15K00392
[Presentation] RNAデバイス設計のインフォマティクス2015
- Author(s)
  種田　晃人
- Organizer
  RNAインフォマティクス道場2015 in 札幌
- Place of Presentation
  産業技術総合研究所　北海道センター
- Year and Date
  2015-08-19
- Data Source
  KAKENHI-PROJECT-15K00392
[Presentation] 複数の指定した特徴を持つRNAデバイスのコンピュータ援用設計2015
- Author(s)
  種田　晃人
- Organizer
  第38回日本分子生物学会年会
- Place of Presentation
  神戸国際展示場
- Year and Date
  2015-12-02
- Data Source
  KAKENHI-PROJECT-15K00392
[Presentation] Constraint multi-objective optimization for RNA sequence alignment2014
- Author(s)
  Yudai Ito and Akito Taneda
- Organizer
  生命医薬情報学連合大会2014年大会（IIBMP2014）
- Place of Presentation
  仙台国際センター（仙台市）
- Year and Date
  2014-10-02
- Data Source
  KAKENHI-PROJECT-24500358
[Presentation] Molecular characterization of attenuated Potato spindle tuber viroid strain from dahlia2014
- Author(s)
  Tsushima D・Taneda A・Sano T
- Organizer
  XIVth International Congress of Virology
- Place of Presentation
  カナダ・モントリオール市
- Year and Date
  2014-07-29
- Data Source
  KAKENHI-PROJECT-24380026
[Presentation] 最近の人工リボスイッチ設計の動向について2014
- Author(s)
  種田　晃人
- Organizer
  RNAインフォマティクス道場 in 札幌
- Place of Presentation
  産総研北海道センター（札幌市）
- Year and Date
  2014-08-27
- Data Source
  KAKENHI-PROJECT-24500358
[Presentation] ジャガイモやせいもウイロイド-ダリア株の可変及び右末端領域に生じた3塩基変異の分析2014
- Author(s)
  対馬大希・種田晃人・佐野輝男
- Organizer
  平成26年度日本植物病理学会
- Place of Presentation
  札幌市札幌コンベンションセンター
- Year and Date
  2014-06-02
- Data Source
  KAKENHI-PROJECT-24380026
[Presentation] Computational design of pseudoknotted RNA switch2014
- Author(s)
  A. Taneda
- Organizer
  生命医薬情報学連合大会2014年大会（IIBMP2014）
- Place of Presentation
  仙台国際センター（仙台市）
- Year and Date
  2014-10-02
- Data Source
  KAKENHI-PROJECT-24500358
[Presentation] Characterization of Hop stunt viroid adaptation mutations emerged during persistent infection in hops2013
- Author(s)
  Sano T, Zhang S-X, Taneda A, Matsuda T, Murosaki F, Li S-F, Owens RA
- Organizer
  International Workshop on Viroids and Satellite RNAs (IWVdS)
- Place of Presentation
  Beijing, China
- Data Source
  KAKENHI-PROJECT-24380026
[Presentation] 進化的計算を用いたＲＮＡ配列設計における遺伝的オペレーターの効果2012
- Author(s)
  伊藤　裕、種田晃人
- Organizer
  電気学会Ｃ部門大会
- Place of Presentation
  弘前大学（青森県）
- Data Source
  KAKENHI-PROJECT-24500358
[Presentation] 構造変化を伴う機能性RNAの配列設計2011
- Author(s)
  種田晃人
- Organizer
  第10回RNA/RNPを見つける会
- Place of Presentation
  カルチャーリゾートフェストーネ(沖縄県)
- Year and Date
  2011-09-16
- Data Source
  KAKENHI-PROJECT-22700304
[Presentation] Computational RNA sequence design toward creation of artificial functional RNAs2011
- Author(s)
  種田晃人
- Organizer
  第34回日本分子生物学会年会(シンポジウム講演)
- Place of Presentation
  パシフィコ横浜(神奈川県)
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-22700304
[Presentation] RNAの逆フォールディング2011
- Author(s)
  種田晃人
- Organizer
  次世代バイオインフォマティクス研究会2011
- Place of Presentation
  産業技術総合研究所北海道センター(北海道)
- Year and Date
  2011-08-02
- Data Source
  KAKENHI-PROJECT-22700304
[Presentation] Computational RNA sequence design toward creation of artificial functional RNAs2011
- Author(s)
  種田晃人
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜(神奈川県)(シンポジウム講演)
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-22700304
[Presentation] A multi-objective evolutionary algorithm for RNA sequence design2010
- Author(s)
  種田晃人
- Organizer
  生命情報工学研究センターワークショップ2010(CBRC2010)
- Place of Presentation
  産業技術総合研究所臨海副都心センター別館(東京都)
- Year and Date
  2010-07-27
- Data Source
  KAKENHI-PROJECT-22700304
[Presentation] A MULTI-OBJECTIVE EVOLUTIONARY ALGORITHM FOR RNA SEQUENCE DESIGN2010
- Author(s)
  種田晃人
- Organizer
  生命情報工学研究センターワークショップ2010(CBRC2010)
- Place of Presentation
  産業技術総合研究所臨海副都心センター別館(東京都)
- Year and Date
  2010-07-27
- Data Source
  KAKENHI-PROJECT-22700304
[Presentation] 多目的最適化によるRNA配列解析2010
- Author(s)
  種田晃人
- Organizer
  新しいRNA/RNPを見つける会2010
- Place of Presentation
  弘前大学コラボレーションセンター(青森県)
- Year and Date
  2010-09-06
- Data Source
  KAKENHI-PROJECT-22700304
[Presentation] 多目的最適化によるRNA配列解析2010
- Author(s)
  種田晃人
- Organizer
  新しい RNA/RNPを見つける会2010
- Place of Presentation
  弘前大学コラボレーションセター(青森県)
- Year and Date
  2010-09-06
- Data Source
  KAKENHI-PROJECT-22700304
[Presentation] Computational RNA sequence design2009
- Author(s)
  A.Taneda
- Organizer
  The Third General Meeting of ACCMS-VO (Asian Consortium on Computational Science-Virtual Organization
- Place of Presentation
  Matsushima, Miyagi, Japan
- Data Source
  KAKENHI-PROJECT-19700272
[Presentation] Computational RNA sequence design2009
- Author(s)
  A.Taneda
- Organizer
  The Third General Meeting of ACCMS-VO (Asian Consortium on Computational Science - Virtual Organization)
- Place of Presentation
  Matsushima,Miyagi,Japan
- Data Source
  KAKENHI-PROJECT-19700272
[Presentation] A Sampling Approach for Predicting Single-Stranded Regions in the Consensus Structure of Aligned RNA Sequences2008
- Author(s)
  A. Taneda
- Organizer
  THE 2nd TAIWAN-JAPAN YOUNG RESEARCHERS CONFERENCE ON COMPUTATIONAL AND SYSTEMS BIOLOGY
- Place of Presentation
  Odaiba, Tokyo, Japan
- Data Source
  KAKENHI-PROJECT-19700272
[Presentation] Pairwise genome comparison for finding functional RNAs with low sequence identity2007
- Author(s)
  A.Taneda
- Organizer
  The 2007 Annual Conference of Japanese Society for Bioinformatics
- Place of Presentation
  日本科学未来館, 東京都江東区
- Data Source
  KAKENHI-PROJECT-19700272
[Presentation] C/D or H/ACA snoRNP proteins do not influence the nucleolar localization of C. elegans CeR-2/CeN21 RNA2007
- Author(s)
  Y.Hokii, M. Shimoyama, A.Taneda et al.
- Organizer
  16TH INTERNATIONAL C. ELEGANS MEETING
- Place of Presentation
  University of California, Los Angeles, USA.
- Data Source
  KAKENHI-PROJECT-19700272
[Presentation] C/D or H/ACA snoRNP proteins do not influence the nucleolar localization of C. elegans CeR-2/CeN21 RNA2007
- Author(s)
  Y. Hokii, M. Shimoyama, A. Taneda, et. al.
- Organizer
  16TH INTERNATIONAL C. ELEGANS MEETING
- Place of Presentation
  University of California, Los Angeles, USA
- Data Source
  KAKENHI-PROJECT-19700272
[Presentation] Alignment, gene finding, and clustering of structural RNAs by an efficient genetic algorithm2007
- Author(s)
  A.Taneda
- Organizer
  15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB)
- Place of Presentation
  Vienna, Austria
- Data Source
  KAKENHI-PROJECT-19700272
[Presentation] 塩基対形成確率アライメントとサポートベクターマシーンによる非翻訳RNA予測2007
- Author(s)
  種田晃人
- Organizer
  新しいRNA/RNPを見つける会
- Place of Presentation
  理化学研究所バイオリソースセンター, 茨城県つくば市
- Data Source
  KAKENHI-PROJECT-19700272
[Presentation] 日本の栽培リンゴから検出されたApple dimple fruit viroid(ADFVd)2007
- Author(s)
  磯野清香, 種田晃人, 佐野輝男, 近藤賢一, 飯島章彦
- Organizer
  平成19年度日本植物病理学会大会
- Place of Presentation
  宇都宮市(宇都宮大学)
- Year and Date
  2007-03-28
- Data Source
  KAKENHI-PROJECT-18380028
[Presentation] 塩基対形成確率アライメントとサポートベクターマシーンによる非翻訳RNA予測2007
- Author(s)
  種田晃人
- Organizer
  新しいRNA/RNPを見つける会
- Place of Presentation
  理化学研究所バイオリソースセンター,茨城県つくば市
- Data Source
  KAKENHI-PROJECT-19700272
[Presentation] 病原性の異なるジャガイモやせいもウロド感染トマト中のマイクロRNA発現量の変動分析
- Author(s)
  対馬大希・Adkar-Purushothama Charith Raj・種田晃人・佐野輝男
- Organizer
  平成26年度日本植物病理学会感染生理談話会
- Place of Presentation
  仙台市作並温泉鷹泉閣岩松旅館
- Year and Date
  2014-08-06 – 2014-08-08
- Data Source
  KAKENHI-PROJECT-24380026
[Presentation] MODENA：RNAデバイス設計のためのバイオインフォマティクスツール
- Author(s)
  種田　晃人
- Organizer
  第36回日本分子生物学会年会
- Place of Presentation
  神戸国際展示場1号館（兵庫県）
- Data Source
  KAKENHI-PROJECT-24500358
[Presentation] ＲＮＡ配列設計のためのアルゴリズム
- Author(s)
  種田　晃人
- Organizer
  RNAアルゴリズム研究会2013
- Place of Presentation
  産総研臨海副都心センター別館(東京都江東区)
- Data Source
  KAKENHI-PROJECT-24500358
[Presentation] A multi-objective genetic algorithm for multi-target RNA design
- Author(s)
  A. Taneda
- Organizer
  The 13th European Conference on Computational Biology (ECCB14)
- Place of Presentation
  Strasbourg Convention Centre（Strasbourg, France）
- Year and Date
  2014-09-08 – 2014-09-10
- Data Source
  KAKENHI-PROJECT-24500358
[Presentation] RNA inverse folding for multiple target secondary structures
- Author(s)
  Akito Taneda
- Organizer
  at the Computational Biology Research Center Workchop 2013
- Place of Presentation
  産総研臨海副都心センター別館(東京都江東区)
- Data Source
  KAKENHI-PROJECT-24500358
[Presentation] 病原性の異なるジャガイモやせいもウロド感染トマト中のマイクロRNA発現量の変動分析
- Author(s)
  対馬大希・Adkar-Purushothama Charith Raj・種田晃人・佐野輝男
- Organizer
  平成26年度日本植物病理学会東北部会
- Place of Presentation
  盛岡市アイーナホール
- Year and Date
  2014-09-25 – 2014-09-26
- Data Source
  KAKENHI-PROJECT-24380026

1. SANO Teruo (30142699)

# of Collaborated Projects: 4 results

# of Collaborated Products: 10 results
2. SENDA Mineo (30261457)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. KASHIWAGI Akiko (40362652)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. HARADA Takeo (10228645)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. Toki Tsutomu (50195731)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. 葛西厚史 (80633982)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
7. R.A. Owens

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. OWENS R.A.

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
9. Jaroslav Matoušek

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. Adkar Purushothama CR

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Taneda Akito 種田 晃人

TANEDA Akito 種田 晃人

Research Projects

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共転写フォールディングの粗視化シミュレーションにより得られるRNA二次構造の評価Principal Investigator

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タンデム接続されたRNAスイッチのリガンド結合ダイナミクスシミュレーションPrincipal Investigator

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RNA secondary structure dynamics simulation including pseudoknotsPrincipal Investigator

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Elucidation of the pathogenesis of diamond-blackfan anemia and identification of novel therapeutic targets

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Computational RNA switch design for artificial RNA circuitsPrincipal Investigator

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Pathogenicity of viroid - circular RNA pathogen; Analysis of destructive effects of viroid infection on a host miRNA/gene expression network

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Analysis of cultivar- and tissue-specific biogenesis of viroid-specific small RNA in relation to viroid pathogenicity

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Bioinformatic study on functional RNAs with a conformational changePrincipal Investigator

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Large scale sequencing analysis of microbial diversity in phyllo-and rhizo-sphares of apple trees for investigation of the mechanism to acquire natural immunity under natural farming practices

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RNA interactome prediction in eukaryotic genomesPrincipal Investigator

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Genome scale prediction of eukaryotic pseudoknotted non-coding RNAsPrincipal Investigator

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Molecular mechanisms of replication and pathogenicity of viroid -non-coding RNA pathogen

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ペアワイズ比較ゲノムによる新規非翻訳RNAの探索Principal Investigator

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Taneda Akito 種田晃人

TANEDA Akito 種田晃人