Okubo Takashi 大久保卓

… Alternative Names

大久保卓オオクボタカシ

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Researcher Number	70749275
Other IDs
Affiliation (Current)	2025: 国立研究開発法人農業・食品産業技術総合研究機構, 農業環境研究部門, 契約研究員 2025: 国立研究開発法人海洋研究開発機構, その他, その他
Affiliation (based on the past Project Information) *help	2021: 国立研究開発法人海洋研究開発機構, 海底資源研究開発センター, ポストドクトラル研究員 2019: 国立研究開発法人海洋研究開発機構, 地球環境部門(海洋生物環境影響研究センター), ポストドクトラル研究員 2018 – 2019: 国立研究開発法人海洋研究開発機構, 海底資源研究開発センター, ポストドクトラル研究員 2016: 国立研究開発法人農業・食品産業技術総合研究機構, 農業環境変動研究センター物質循環研究領域, JSPS特別研究員(PD) 2016: 国立研究開発法人農業・食品産業技術総合研究機構, 農業環境変動研究センター物質循環研究領域, 特別研究員 2015: 国立研究開発法人農業環境技術研究所, その他部局等, 研究員
Review Section/Research Field	Principal Investigator Environmental agriculture(including landscape science) Except Principal Investigator Basic Section 63010:Environmental dynamic analysis-related / Medium-sized Section 62:Applied informatics and related fields / Environmental agriculture(including landscape science)
Keywords	Principal Investigator 競合的排除 / 固体表面 / 競争排除 / 多種共存 / アンモニア酸化細菌 Except Principal Investigator アナモックス / メタトランスクリプトーム / 15N トレーサー / 代謝ポテンシャル解析 / 15Nトレーサー … More / 機能ポテンシャル解析 / メタゲノム / anammox / トレーサー / 窒素安定同位体 / 回復予測 / メタゲノミクス / マイクロバイオーム / 数理統計解析 / 機能的メタゲノム解析 / 数理解析 / 腸内細菌叢 / メタゲノム解析 / 乳児 / 根域 / イネ / 気候変動 / 高CO2 / 水田 / 窒素 / メタン Less

Exploring functional differentiation of anammox bacteria: actually diverse anammox
- Principal Investigator
  
  Kuroiwa Megumi
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 63010:Environmental dynamic analysis-related
- Research Institution
  Tokyo University of Agriculture and Technology
Prediction of recovery of microbiome after perturbation by the combination of mathematical analysis and metagenomics
- Principal Investigator
  
  TAKAMI Hideto
- Project Period (FY)
  2018 – 2019
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 62:Applied informatics and related fields
- Research Institution
  Japan Agency for Marine-Earth Science and Technology
Coexistence of ammonia-oxidizing bacteria in soilPrincipal Investigator
- Principal Investigator
  
  Okubo Takashi
- Project Period (FY)
  2015 – 2016
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Environmental agriculture(including landscape science)
- Research Institution
  National Agriculture and Food Research Organization
  National Institute for Agro-Environmental Sciences
Nitrogen controlling carbon dynamics in rice-paddy ecosystems under climate change: Possible mechanisms to mitigate rice-paddy methane emissions
- Principal Investigator
  
  Hayashi Kentaro
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Environmental agriculture(including landscape science)
- Research Institution
  National Agriculture and Food Research Organization
  National Institute for Agro-Environmental Sciences

All 2020 2016 2015 2014

All Journal Article Presentation

[Journal Article] The physiological potential of anammox bacteria as revealed by their core genome structure2020
- Author(s)
  Okubo Takashi、Toyoda Atsushi、Fukuhara Kohei、Uchiyama Ikuo、Harigaya Yuhki、Kuroiwa Megumi、Suzuki Takuma、Murakami Yuka、Suwa Yuichi、Takami Hideto
- Journal Title
  
  DNA Research
  
  Volume: 28 Issue: 1 Pages: 1-12
- DOI
  10.1093/dnares/dsaa028
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H00793, KAKENHI-PROJECT-17K19292, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19H04241, KAKENHI-PROJECT-20H03029
[Journal Article] Characterization of Leaf Blade- and Leaf Sheath-Associated Bacterial Communities and Assessment of Their Responses to Environmental Changes in CO<sub>2</sub>, Temperature, and Nitrogen Levels under Field Conditions2015
- Author(s)
  Seishi Ikeda, Takeshi Tokida, Hirofumi Nakamura, Hidemitsu Sakai, Yasuhiro Usui, Takashi Okubo, Kanako Tago, Kentaro Hayashi, Yasuyo Sekiyama, Hiroshi Ono, Satoru Tomita, Masahito Hayatsu, Toshihiro Hasegawa, and Kiwamu Minamisawa
- Journal Title
  
  Microbes and Environments
  
  Volume: 30 Issue: 1 Pages: 51-62
- DOI
  10.1264/jsme2.ME14117
- NAID
  130005061713
- ISSN
  1342-6311, 1347-4405
- Language
  English
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-22580074, KAKENHI-PROJECT-24580029, KAKENHI-PROJECT-26252004, KAKENHI-PROJECT-26252061, KAKENHI-PROJECT-26252065
[Journal Article] Elevated atmospheric CO2 levels affect community structure of rice root-associated bacteria2015
- Author(s)
  Takashi Okubo, Dongyan Liu, Hirohito Tsurumaru, Seishi Ikeda, Susumu Asakawa, Takeshi Tokida, Kanako Tago, Masahito Hayatsu, Naohiro Aoki, Ken Ishimaru, Kazuhiro Ujiie, Yasuhiro Usui, Hirofumi Nakamura, Hidemitsu Sakai, Kentaro Hayashi, Toshihiro Hasegawa and Kiwamu Minamisawa
- Journal Title
  
  Frontiers in Microbiology
  
  Volume: 6 Pages: 1-8
- DOI
  10.3389/fmicb.2015.00136
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-14J09473, KAKENHI-PROJECT-22580074, KAKENHI-PROJECT-26252004, KAKENHI-PROJECT-26252061, KAKENHI-PROJECT-26252065
[Journal Article] Effects of Elevated Carbon Dioxide, Elevated Temperature, and Rice Growth Stage on the Community Structure of Rice Root–Associated Bacteria2014
- Author(s)
  Takashi Okubo, Takeshi Tokida, Seishi Ikeda, Zhihua Bao, Kanako Tago, Masahito Hayatsu, Hirofumi Nakamura, Hidemitsu Sakai, Yasuhiro Usui, Kentaro Hayashi, Toshihiro Hasegawa, Kiwamu Minamisawa
- Journal Title
  
  Microbes and Environments
  
  Volume: 29 Issue: 2 Pages: 184-190
- DOI
  10.1264/jsme2.ME14011
- NAID
  130004057185
- ISSN
  1342-6311, 1347-4405
- Language
  English
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-14J09473, KAKENHI-PROJECT-26252004, KAKENHI-PROJECT-26252061
[Journal Article] FACE to FACE: 気候変動影響に立ち向かう土壌肥料学と作物学2014
- Author(s)
  林健太郎・長谷川利拡・臼井靖浩・常田岳志・Charles P. Chen・八島未和・片柳薫子・堅田元喜・麓多門・池田成志・大久保卓
- Journal Title
  
  日本土壌肥料学雑誌
  
  Volume: 85 Pages: 269-274
- Data Source
  KAKENHI-PROJECT-26252061
[Presentation] anammox 反応の原型はNOを電子受容体として利用していた2020
- Author(s)
  大久保卓、豊田敦、福原康平、内山郁夫、黒岩恵、針ヶ谷優生、鈴木拓磨、村上由夏、諏訪裕一、高見英人
- Organizer
  日本ゲノム微生物学会　第14回年会
- Data Source
  KAKENHI-PROJECT-19H04241
[Presentation] アナモクスリアクターにおける窒素代謝の速度論的解析2020
- Author(s)
  黒岩恵、鈴木拓磨、髙見英人、大久保卓、諏訪裕一
- Organizer
  日本生態学会　第67回全国大会
- Data Source
  KAKENHI-PROJECT-19H04241
[Presentation] メタン酸化が駆動する水田の微生物食物連鎖の構造は根圏と非根圏で異なる2016
- Author(s)
  日比野優子・常田岳志・大久保卓・荒井見和・林健太郎・酒井英光・長谷川利拡・村瀬潤
- Organizer
  日本微生物生態学会31回横須賀大会
- Place of Presentation
  横須賀市文化会館（神奈川県横須賀市）
- Year and Date
  2016-10-23
- Data Source
  KAKENHI-PROJECT-26252061
[Presentation] Effects of elevated carbon dioxide and nitrogen fertilizer on methane oxidation and production in rice paddy ecosystems estimated with an oxidation inhibitor treatment2016
- Author(s)
  Arai M, Tokida T, Okubo T, Nakamura H, Hasegawa T, Hayashi K
- Organizer
  FACEing the future: Food production and ecosystems
- Place of Presentation
  Justus Liebig University (Giessen, Germany)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26252061

1. TAKAMI Hideto (70359165)

# of Collaborated Projects: 2 results

# of Collaborated Products: 2 results
2. Hayashi Kentaro (70370294)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
3. MURASE Jun (30285241)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
4. FUMOTO Tamon (30354103)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
5. KOBA Keisuke (90311745)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. IKEDA Seishi (20396609)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
7. Kuroiwa Megumi (00761024)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
8. 長谷川利拡 (10228455)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
9. 常田岳志 (20585856)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
10. 小野圭介 (20549555)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 八島未和 (60527927)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
12. 竹本和広 (40512356)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 桑原知巳 (60263810)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. ARAI Miwa

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
15. SUWA Yuichi

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Okubo Takashi 大久保 卓

大久保 卓 オオクボ タカシ

Research Projects

Research Products

Co-Researchers

Exploring functional differentiation of anammox bacteria: actually diverse anammox

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Prediction of recovery of microbiome after perturbation by the combination of mathematical analysis and metagenomics

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Coexistence of ammonia-oxidizing bacteria in soilPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Nitrogen controlling carbon dynamics in rice-paddy ecosystems under climate change: Possible mechanisms to mitigate rice-paddy methane emissions

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] The physiological potential of anammox bacteria as revealed by their core genome structure2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Characterization of Leaf Blade- and Leaf Sheath-Associated Bacterial Communities and Assessment of Their Responses to Environmental Changes in CO<sub>2</sub>, Temperature, and Nitrogen Levels under Field Conditions2015

Author(s)

Journal Title

DOI

NAID

ISSN

Language

Data Source

[Journal Article] Elevated atmospheric CO2 levels affect community structure of rice root-associated bacteria2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Effects of Elevated Carbon Dioxide, Elevated Temperature, and Rice Growth Stage on the Community Structure of Rice Root–Associated Bacteria2014

Author(s)

Journal Title

DOI

NAID

ISSN

Language

Data Source

[Journal Article] FACE to FACE: 気候変動影響に立ち向かう土壌肥料学と作物学2014

Author(s)

Journal Title

Data Source

[Presentation] anammox 反応の原型はNOを電子受容体として利用していた2020

Author(s)

Organizer

Data Source

[Presentation] アナモクスリアクターにおける窒素代謝の速度 論的解析2020

Author(s)

Organizer

Data Source

[Presentation] メタン酸化が駆動する水田の微生物食物連鎖の構造は根圏と非根圏で異なる2016

Author(s)

Organizer

Place of Presentation

Year and Date

Data Source

[Presentation] Effects of elevated carbon dioxide and nitrogen fertilizer on methane oxidation and production in rice paddy ecosystems estimated with an oxidation inhibitor treatment2016

Author(s)

Organizer

Place of Presentation

Data Source

Okubo Takashi 大久保卓

大久保卓オオクボタカシ

[Presentation] アナモクスリアクターにおける窒素代謝の速度論的解析2020