Abe Ko 阿部興

… Alternative Names

阿部興アベコウ

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Researcher Number	70832533
Other IDs
Affiliation (Current)	2025: 東京科学大学, 総合研究院, プロジェクト講師
Affiliation (based on the past Project Information) *help	2024: 東京医科歯科大学, 難治疾患研究所, プロジェクト講師 2020 – 2022: 神戸薬科大学, 薬学部, 講師
Review Section/Research Field	Principal Investigator Basic Section 62010:Life, health and medical informatics-related Except Principal Investigator Basic Section 43030:Functional biochemistry-related / Basic Section 62010:Life, health and medical informatics-related
Keywords	Principal Investigator 時系列データ / マルチオミクス / 数理モデル / 因果推論 / 腸内細菌叢 Except Principal Investigator 無菌炎症 / 自然免疫 / 行列因子分解 / 相互作用ネットワーク / 時空間解析 … More / ベイズモデリング / 空間トランスクリプトーム / シングルセルオミクス / 細胞ダイナミクス / 因子分解 / マルチオミクス / 深層生成モデル / 細胞運命決定 / 細胞間コミュニケーション / 一細胞解析 / ベイズモデル Less

NF-κBに依存しない自然免疫誘導メカニズムの解明
- Principal Investigator
  
  倉石貴透
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43030:Functional biochemistry-related
- Research Institution
  Kanazawa University
腸内細菌叢と疾病の因果関係推定のための数理モデルの構築Principal Investigator
- Principal Investigator
  
  阿部興
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Kobe Pharmaceutical University
Development of Bayesian modeling approach to understand multicellular dynamics
- Principal Investigator
  
  Shimamura Teppei
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Nagoya University

All 2022 2021 2020

All Journal Article

[Journal Article] An analysis modality for vascular structures combining tissue-clearing technology and topological data analysis2022
- Author(s)
  Takahashi K, Abe K, Kubota SI, Fukatsu N, Morishita Y, Yoshimatsu Y, Satoshi Hirakawa, Yoshiaki Kubota, Tetsuro Watabe, Shogo Ehata, Hiroki R. Ueda, Teppei Shimamura, Kohei Miyazono
- Journal Title
  
  Nature Communiactions
  
  Volume: 13 Issue: 1 Pages: 5239-5239
- DOI
  10.1038/s41467-022-32848-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K07094, KAKENHI-PROJECT-22K15435, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-18H05270, KAKENHI-PROJECT-20H03851, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839, KAKENHI-PLANNED-17H06326, KAKENHI-ORGANIZER-19H05794, KAKENHI-PROJECT-20H00513
[Journal Article] Hierarchical non-negative matrix factorization using clinical information for microbial communities2021
- Author(s)
  Abe Ko、Hirayama Masaaki、Ohno Kinji、Shimamura Teppei
- Journal Title
  
  BMC Genomics
  
  Volume: 22 Issue: 1 Pages: 104-104
- DOI
  10.1186/s12864-021-07401-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K22802, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-19H05210, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-20H03561, KAKENHI-PROJECT-20H04281
[Journal Article] A mixture-of-experts deep generative model for integrated analysis of single-cell multiomics data2021
- Author(s)
  Minoura Kodai、Abe Ko、Nam Hyunha、Nishikawa Hiroyoshi、Shimamura Teppei
- Journal Title
  
  Cell Reports Methods
  
  Volume: 1(5) Issue: 5 Pages: 100071-100071
- DOI
  10.1016/j.crmeth.2021.100071
- Data Source
  KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832
[Journal Article] ARHGAP10, which encodes Rho GTPase-activating protein 10, is a novel gene for schizophrenia risk2020
- Author(s)
  Mariko Sekiguchi, Akiko Kodama,... Emiko Shishido,... Daisuke Mori, Norio Ozaki
- Journal Title
  
  Translational psychiatry
  
  Volume: 10 Issue: 1 Pages: 1-15
- DOI
  10.1038/s41398-020-00917-z
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K08072, KAKENHI-PROJECT-20K07082, KAKENHI-PROJECT-20K07965, KAKENHI-PROJECT-20K21832, KAKENHI-PROJECT-18K14816, KAKENHI-PROJECT-20K16488, KAKENHI-PROJECT-20K16625, KAKENHI-PROJECT-19H05467, KAKENHI-PUBLICLY-19H05210, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-18H04040, KAKENHI-PROJECT-20H03611, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-17K07383, KAKENHI-PROJECT-18K15512, KAKENHI-PROJECT-19K16111, KAKENHI-PROJECT-16H06277, KAKENHI-PROJECT-17H04252, KAKENHI-PROJECT-18KT0022
[Journal Article] Coordinated demethylation of H3K9 and H3K27 is required for rapid inflammatory responses of endothelial cells2020
- Author(s)
  Higashijima Y, Matsui Y, Shimamura T, Nakaki R, Nagai N, Tsutsumi S, Abe Y, Link VM, Osaka M, Yoshida M, Watanabe R, Tanaka T, Taguchi A, Miura M, Ruan X, Li G, Inoue T, Nangaku M, Kimura H, Furukawa T, Aburatani H, Wada Y, Ruan Y, Glass CK, Kanki Y
- Journal Title
  
  The EMBO Journal
  
  Volume: 39 Issue: 7 Pages: 1-1
- DOI
  10.15252/embj.2019103949
- NAID
  120006902140
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K23850, KAKENHI-PUBLICLY-18H04798, KAKENHI-PUBLICLY-18H04899, KAKENHI-PLANNED-18H05527, KAKENHI-PUBLICLY-19H05210, KAKENHI-PLANNED-19H05744, KAKENHI-PROJECT-17H03614, KAKENHI-PROJECT-17J07088, KAKENHI-PROJECT-17K15991, KAKENHI-PROJECT-19K21297, KAKENHI-PROJECT-20K09448, KAKENHI-PROJECT-20K21832, KAKENHI-PROJECT-20K17242, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-18H02803, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-19K22679, KAKENHI-ORGANIZER-19H05739, KAKENHI-PROJECT-18H03207, KAKENHI-PROJECT-20H03432
[Journal Article] CYBERTRACK2.0: zero-inflated model-based cell clustering and population tracking method for longitudinal mass cytometry data2020
- Author(s)
  Minoura K*, Abe K*, Maeda Y, Nishikawa H, Shimamura T§
- Journal Title
  
  Bioinformatics
  
  Volume: - Issue: 11 Pages: 873-873
- DOI
  10.1093/bioinformatics/btaa873
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-19H05210, KAKENHI-PROJECT-17K15738, KAKENHI-PROJECT-17H06162, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832
[Journal Article] Model-based clustering for flow and mass cytometry data with clinical information2020
- Author(s)
  Abe K, Minoura K, Maeda Y, Nishikawa H, Shimamura T§
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 21(Suppl 13) Issue: S13 Pages: 393-393
- DOI
  10.1186/s12859-020-03671-7
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-19H05210, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-17K15738, KAKENHI-PROJECT-17H06162

1. Shimamura Teppei (00623943)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
2. 倉石貴透 (90613167)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 堀亜紀 (90825150)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. 小関準 (20616669)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. 大野欽司

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
6. 東島恵美子(宍戸恵美子)

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
7. 永井直

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
8. 吉松康裕

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Abe Ko 阿部 興

阿部 興 アベ コウ

Research Projects

Research Products

Co-Researchers

NF-κBに依存しない自然免疫誘導メカニズムの解明

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

腸内細菌叢と疾病の因果関係推定のための数理モデルの構築Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of Bayesian modeling approach to understand multicellular dynamics

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] An analysis modality for vascular structures combining tissue-clearing technology and topological data analysis2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Hierarchical non-negative matrix factorization using clinical information for microbial communities2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] A mixture-of-experts deep generative model for integrated analysis of single-cell multiomics data2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] ARHGAP10, which encodes Rho GTPase-activating protein 10, is a novel gene for schizophrenia risk2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Coordinated demethylation of H3K9 and H3K27 is required for rapid inflammatory responses of endothelial cells2020

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] CYBERTRACK2.0: zero-inflated model-based cell clustering and population tracking method for longitudinal mass cytometry data2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Model-based clustering for flow and mass cytometry data with clinical information2020

Author(s)

Journal Title

DOI

Data Source

Abe Ko 阿部興

阿部興アベコウ