Shimizu Kentaro 清水謙多郎

… Alternative Names

清水謙多郎シミズケンタロウ

SHIMIZU Kentaro 清水謙多郎

清水謙太郎シミズケンタロウ

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Researcher Number	80178970
Other IDs	https://orcid.org/0000-0002-3245-0052
External Links
Affiliation (Current)	2024: 日本女子大学, 理学部, 教授
Affiliation (based on the past Project Information) *help	2021 – 2022: 東京大学, 大学院農学生命科学研究科(農学部), 教授 2017 – 2019: 東京大学, 大学院農学生命科学研究科(農学部), 教授 2012 – 2014: 東京大学, 農学生命科学研究科, 教授 2007 – 2011: The University of Tokyo, Graduate School of Agricultural and Life Sciences, Professor 2006: 東京大学, 大学院農学生命科学研究科, 教授 … More 1998 – 2005: 東京大学, 大学院・農学生命科学研究科, 教授 1996 – 1997: 東京大学, 大学院・農学生命科学研究科, 助教授 1994 – 1995: 電気通信大学, 電気通信学部, 助教授 1992: 電気通信大学, 電気通信学部, 助教授 1990: Univ. Electro-Comm., Fac. E-C., Assoc. Prof., 電気通信学部, 助教授 1990: 電気通信大学, 電気通信学部, 講師 Less
Review Section/Research Field	Principal Investigator Biological Sciences / 計算機科学 / Science and Engineering / Bioinformatics/Life informatics / Life / Health / Medical informatics / Basic Section 62010:Life, health and medical informatics-related Except Principal Investigator Basic Section 62010:Life, health and medical informatics-related / Informatics
Keywords	Principal Investigator 構造予測 / タンパク質 / 生体生命情報学 / 並列計算 / プロテオーム / 蛋白質 / バイオインフォマティクス / グリッドコンピューティング / 資源管理 / MPI … More / 分子動力学法 / ミドルウェア / 分散共有メモリ / 統計ポテンシャル / 科学技術計算 / スケジューリング / 並列プログラミング環境 / オペレーティングシステム / scheduling / 分子間相互作用 / BLOSUM / アミノ酸配列 / 分子動力学シミュレーション / プロセッサ割当て / 大規模並列システム / 深層学習 / bioinformatics / computational chemistry / molecular dynamics / processor allocation / parallel programming environment / parallel computing / 大規模並列計算機 / 計算化学 / 分子動力学計算 / プロセス間通信 / operating system / 保護 / マイクロカーネル / 分散処理 / オブジェクト指向 / 構造精密化 / 構造評価 / 分子動力学 / 複合体 / 機能予測 / フラグメントアセンブリ方式 / ホモロジーモデリング / 遺伝子クラスタリング / 二次構造 / 分散共有記憶 / 負荷分散 / スレッド / カーネル / PSSM / MoRF / 天然変性 / 分子シミュレーション / ドッキング予測 / ペプチド設計 / 抗ウィルスペプチド / 活性予測 / 機械学習 / ペプチド / molecular dynamics simulation / protein structure assessment / protein structure refinement / protein structure prediction / proteome / 蛋白質構造評価 / 蛋白質構造精密化 / 蛋白質構造予測 / grid computing / data consistency protocol / scientific computing / distributed shared memory / Parallel programming environment / データー貫性制御 / データ一貫性制御 / 生命情報科学 / MP1 / エネルギー最小化計算 / 分子動力学シュミレーション / 動的資源管理 / MPI (Message Passing Interface) / スレープ方式 / マスタ / 空間分割法 / thread / object oriented system / kernel / ページ置換え方針 / global page placement / global scheduling / load balancing / multiprocessor systems / responsiveness / real-time processing / フォールトトレラント / 超並列計算機 / エミュレーション / 仮想記憶 / 並列処理 / 大域的ページ配置方針 / 大域的スケジューリング / 耐故障性 / 実時間処理 / microkernel / distributed processing / abstract data type / obejct-orient system / 永続処理 / 抽象データ型 / 予測機能 / 相互作用 / 糖 / データベース / 相互作用予測 / 糖鎖 / ブロテオーム / 不規則領域 / ネットワーク / ソフトウェア学 / ハイパフォーマンス・コンピューティング / マルチカノニカル法 / アビニシオ法 / 構造クラスタリング / ab initio法 / 配列類似度 / ハードウェア適応性 / 超並列処理 … More Except Principal Investigator シミュレーション / 新生ペプチド / 翻訳制御 / 粗視化モデル / リボソーム / 粗視化 / 分子動力学シミュレーション / AMBER / uORF / Computer Network / Light-Weight Process / Process Migration / Parametric Analysis / Load Balancing Algorithm / Optimal Load Balancing / Distributed Computer System / Distributed Operating System / コンピュ-タ・ネットワ-ク / プロセス・マイグレ-ション / 分散透明性 / コンピュ-タネットワ-ク / 重さ可変プロセス / プロセス移送 / 負荷分散アルゴリズム / 最適負荷分散 / 分散処理 / 分散型コンピュ-タシステム / 分散型オペレ-ティングシステム / 並列計算環境 / 大規模並列計算機 / 分子動力学法 / 分子シミュレーション / 尿素 / 変性剤 / 疎水性相互作用 / 疎水効果 Less

非コード領域・タンパク構造情報を含むオミクス統合解析に基づく精密医療の実現
- Principal Investigator
  
  高橋広夫
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Kanazawa University
ゲノムジャンク領域にコードされる機能ペプチドの制御機構の情報学的推定と実験的検証
- Principal Investigator
  
  福吉修一
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Kanazawa University
Docking prediction and design of peptides by molecluar simulation and deep learningPrincipal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  The University of Tokyo
Prediction and analysis of intrinsically disordered regions in membrane proteinsPrincipal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for JSPS Fellows
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  The University of Tokyo
Development of protein-carbohydrate binding prediction systems and databasesPrincipal Investigator
- Principal Investigator
  
  SHIMIZU Kentaro
- Project Period (FY)
  2011 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo
タンパク質相互作用のネットワーク予測から原子レベルの結合予測までの統合的研究Principal Investigator
- Principal Investigator
  
  清水謙太郎 (清水謙多郎)
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Database Development and Functional Analysis of Protein Disorder RegionsPrincipal Investigator
- Principal Investigator
  
  SHIMIZU Kentaro
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo
高精度のドッキング機能を有するタンパク質間相互作用予測システムの開発Principal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
高精度のドッキング機能を有するタンパク質間相互作用予測システムの開発Principal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Development of methods for high-resolution protein structure modeling and for model structure assessmentPrincipal Investigator
- Principal Investigator
  
  SHIMIZU Kentaro
- Project Period (FY)
  2005 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo
ホモロジーモデリングとアビニシオ法の統合による高精度タンパク質構造予測手法の開発Principal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
大規模分散データの真に透過で効率的な共有を実現する分散共有配列システムの開発Principal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  The University of Tokyo
ホモロジーモデリングとアビニシオ法の統合による高精度タンパク質構造予測手法の開発Principal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2003
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
大規模分散データの効率的な共有を実現する並列コンピューティング環境の開発Principal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2003
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  The University of Tokyo
タンパク質の局所構造情報を利用したab initio立体構造・機能予測手法の開発Principal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
大規模分散データの効率的な共有を実現する並列コンピューティング環境の開発Principal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  The University of Tokyo
タンパク質の局所構造情報を利用したab initio立体構造・機能予測手法の開発Principal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2001
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
大規模分散データの効率的な共有を実現する並列コンピューティング環境の開発Principal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2001
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Science and Engineering
- Research Institution
  The University of Tokyo
Development of a Parallel Programming Environment based on Distributed Shared Arrays with Application-Specific Resource ManagementPrincipal Investigator
- Principal Investigator
  
  SHIMIZU Kentaro
- Project Period (FY)
  2001 – 2003
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  計算機科学
- Research Institution
  The University of Tokyo
タンパク質の局所構造情報を利用したab initio立体構造・機能予測手法の開発Principal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  2000
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Development of a Parallel Programming Environment with Dynamic Resource Management FacilitiesPrincipal Investigator
- Principal Investigator
  
  SHIMIZU Kentaro
- Project Period (FY)
  1999 – 2001
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  計算機科学
- Research Institution
  THE UNIVERSITY OF TOKYO
ハードウェア構成に柔軟に適応する資源管理機能を備えた並列プログラミング環境の開発Principal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  1998
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Research Institution
  The University of Tokyo
蛋白質の安定性・折れたたみ機構における水・変性剤の分子メカニズム
- Principal Investigator
  
  池口満徳
- Project Period (FY)
  1998
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Research Institution
  The University of Tokyo
Efficient Processor Allocation Policies for Massively Parallel SystemsPrincipal Investigator
- Principal Investigator
  
  SHIMIZU Kentaro
- Project Period (FY)
  1998 – 2000
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  計算機科学
- Research Institution
  THE UNIVERSITY OF TOKYO
Study on operating system architectures for supporting application-specific resource managementPrincipal Investigator
- Principal Investigator
  
  SHIMIZU Kentaro
- Project Period (FY)
  1996 – 1997
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  計算機科学
- Research Institution
  The University of Tokyo
Development of a responsive operating system for scalable multiprocessor systemsPrincipal Investigator
- Principal Investigator
  
  SHIMIZU Kentaro
- Project Period (FY)
  1995 – 1997
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  計算機科学
- Research Institution
  The University of Tokyo
  The University of Electro-Communications
Development of an operating system that supports the distributed and persistent light-weight objectsPrincipal Investigator
- Principal Investigator
  
  SHIMIZU Kentaro
- Project Period (FY)
  1994 – 1995
- Research Category
  
  Grant-in-Aid for General Scientific Research (C)
- Research Field
  
  計算機科学
- Research Institution
  The University of Electro-Communications
超並列オペレーティングシステムにおける負荷分散および分散記憶管理の研究Principal Investigator
- Principal Investigator
  
  清水謙多郎
- Project Period (FY)
  1992
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  The University of Electro-Communications
Research on the Design of Distributed Operating Systems
- Principal Investigator
  
  KAMEDA Hisao
- Project Period (FY)
  1989 – 1990
- Research Category
  
  Grant-in-Aid for General Scientific Research (B)
- Research Field
  
  Informatics
- Research Institution
  The University of Electro-Communications

[Book] Web連携テキストバイオインフォマティクス基礎と応用2022
- Author(s)
  門田幸二, 清水謙多郎, 岸野洋久, 寺田透
- Total Pages
  228
- Publisher
  培風館
- ISBN
  9784563078324
- Data Source
  KAKENHI-PROJECT-21K12122
[Book] 中国科学技術月報第44号中国・日本科学最前線-研究の現場から-2011年版(タンパク質の構造予測手法の開発)2011
- Author(s)
  清水謙多郎
- Publisher
  科学技術振興機構中国総合研究センター
- Data Source
  KAKENHI-PROJECT-20500269
[Book] 遺伝子医学MOOK14次世代創薬テクノロジー実践:インシリコ創薬の最前線(タンパク質のabinitio構造予測)2009
- Author(s)
  中村周吾,清水謙多郎
- Publisher
  メディカルドゥ
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Feedback-AVPGAN: Feedback-guided generative adversarial network for generating antiviral peptides2022
- Author(s)
  1.Kano Hasegawa, Yoshitaka Moriwaki, Tohru Terada, Cao Wei, Kentaro Shimizu
- Journal Title
  
  Journal of Bioinformatics and Computational Biology
  
  Volume: 20 Issue: 06 Pages: 2250026-2250026
- DOI
  10.1142/s0219720022500263
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K12122
[Journal Article] Prediction of MoRFs Based on n-gram Convolutional Neural Network2019
- Author(s)
  Chun Fang, Yoshitaka Moriwaki, Caihong Li, and Kentaro Shimizu
- Journal Title
  
  Proceedings of 11th International Conferenceon Bioinformatics and Computational Biology
  
  Volume: 60 Pages: 113-119
- DOI
  10.29007/5k4z
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17F17050
[Journal Article] Prediction of Antifungal Peptides by Deep Learning with Character Embedding2019
- Author(s)
  Chun Fang, Yoshitaka Moriwaki, Caihong Li, and Kentaro Shimizu
- Journal Title
  
  IPSJ Transactions on Bioinformatics
  
  Volume: 12 Issue: 0 Pages: 21-29
- DOI
  10.2197/ipsjtbio.12.21
- NAID
  130007685780
- ISSN
  1882-6679
- Language
  English
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17F17050
[Journal Article] Comparative analysis of membrane protein structure databases2018
- Author(s)
  K. Shimizu, W. Cao, G. Saad, M. Shoji, T. Terada
- Journal Title
  
  BBA - Biomembranes
  
  Volume: 1860 Issue: 5 Pages: 1077-1091
- DOI
  10.1016/j.bbamem.2018.01.005
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17F17050
[Journal Article] Identifying MoRFs in Disordered Protein Using Enlarged Conserved Features2018
- Author(s)
  Chun Fang, Yoshitaka Moriwaki, Daming Zhu, and K. Shimizu
- Journal Title
  
  2018 6th International Conference on Bioinformatics and Computational Biology
  
  Volume: 12 Pages: 50-54
- DOI
  10.1145/3194480.3198908
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17F17050
[Journal Article] Overdominance effect of the bovine ghrelin receptor (GHSR1a)-DelR242 locus on growth in Japanese Shorthorn weaner bulls: Heterozygote advantage in bull selection and molecular mechanisms.2015
- Author(s)
  Masanori Komatsu, Yoichi Sato, Tatsuki Negami, Tohru Terada, Osamu Sasaki, Jumpei Yasuda, Aisaku Arakawa, Chikara Yoshida, Hideaki Takahashi, Aduli E.O. Malau-Aduli, Keiichi Suzuki and Kentaro Shimizu
- Journal Title
  
  G3: Genes, Genomes, Genetics
  
  Volume: Volume 5 Issue: 2 Pages: 271-279
- DOI
  10.1534/g3.114.016105
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23300109
[Journal Article] Linked Open Data Construction of Purpose Oriented Interactomics by Integration of Life Sciences LOD2014
- Author(s)
  込山悠介, 番野雅城, 鑓水優行, 加藤文彦, 大向一輝, 武田英明, 清水謙多郎
- Journal Title
  
  Transactions of the Japanese Society for Artificial Intelligence
  
  Volume: 29 Issue: 4 Pages: 356-363
- DOI
  10.1527/tjsai.29.356
- NAID
  130004927341
- ISSN
  1346-0714, 1346-8030
- Language
  Japanese
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-23300109
[Journal Article] Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Nonheme Iron Oxygenase Carbazole 1,9a-Dioxygenase2014
- Author(s)
  Kengo Inoue, Yusuke Usami, Yuji Ashikawa, Haruko Noguchi, Takashi Umeda, Aiko Yamagami-Ashikawa, Tadafumi Horisaki, Hiromasa Uchimura, Tohru Terada, Shugo Nakamura, Kentaro Shimizu, Hiroshi Habe, Hisakazu Yamane, Zui Fujimoto and Hideaki Nojiri
- Journal Title
  
  Applied and Environmental Microbiology
  
  Volume: Volume 80 Issue: 9 Pages: 2821-2832
- DOI
  10.1128/aem.04000-13
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23300109, KAKENHI-PROJECT-24780076, KAKENHI-PROJECT-26850052
[Journal Article] Coarse-Grained Molecular Dynamics Simulations of Protein-Ligand Binding2014
- Author(s)
  Tatsuki Negami, Kentaro Shimizu, Tohru Terada
- Journal Title
  
  Journal of Computational Chemistry
  
  Volume: Volume 35 Issue: 25 Pages: 1835-1845
- DOI
  10.1002/jcc.23693
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23300109, KAKENHI-PROJECT-24570179
[Journal Article] Engineering the allosteric properties of archaeal non-phosphorylating glyceraldehyde-3-phosphate dehydrogenases.2014
- Author(s)
  Fumiaki Ito, Masayuki Miyake, Shinya Fushinobu, Shugo Nakamura, Kentaro Shimizu, Takayoshi Wakagi
- Journal Title
  
  BBA - Proteins and Proteomics
  
  Volume: Volume 1844 Issue: 4 Pages: 759-766
- DOI
  10.1016/j.bbapap.2014.01.017
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23300109, KAKENHI-PROJECT-24580136
[Journal Article] TCC: an R package for comparing tag count data with robust normalization strategies.2013
- Author(s)
  Sun, J., Nishiyama, T., Shimizu, K., and Kadota, K.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 14 Issue: 1 Pages: 219-219
- DOI
  10.1186/1471-2105-14-219
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-22128008, KAKENHI-PROJECT-23300109, KAKENHI-PROJECT-24500359
[Journal Article] Selective binding of antimicrobial porphyrins to the hame-receptor IsdH-NEAT3 of Staphylococcus aureus.2013
- Author(s)
  Nhuan Vu
- Journal Title
  
  Protein Science
  
  Volume: 22 Issue: 7 Pages: 942-953
- DOI
  10.1002/pro.2276
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-13J06526, KAKENHI-PROJECT-23300109, KAKENHI-PROJECT-24000011, KAKENHI-PROJECT-25249115
[Journal Article] Heme binding mechanism of structurally similar iron-regulated surface determinant near transporter domains of Staphylococcus aureus exhibiting different affinities for heme.2013
- Author(s)
  Yoshitaka Moriwaki
- Journal Title
  
  Biochemistry
  
  Volume: 52 Issue: 49 Pages: 8866-8877
- DOI
  10.1021/bi4008325
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-13J06526, KAKENHI-PROJECT-23300109, KAKENHI-PROJECT-24000011, KAKENHI-PUBLICLY-24102516, KAKENHI-PROJECT-25249115, KAKENHI-PROJECT-25708026
[Journal Article] タンパク質の構造予測手法の開発2011
- Author(s)
  清水謙多郎
- Journal Title
  
  科学技術振興機構中国科学技術月報
  
  Pages: 137-140
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Protein-Protein Docking Using Multi-layered Spherical Basis Functions2011
- Author(s)
  K.Sumikoshi, T.Terada, S.Nakamura, K.Shimizu
- Journal Title
  
  Proceedings of the 2011 International Conference on Bioscience, Biochemistry and Bioinformatics
  
  Pages: 342-347
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Prediction of carbohydrate-binding proteins from sequences using support vector machines.2010
- Author(s)
  S.Someya, M.Kakuta, M.Morita, K.Sumikoshi, W.Cao, Z.Ge, O.Hirose, S.Nakamura, T.Terada, K.Shimizu
- Journal Title
  
  Advances in Bioinformatics
  
  Pages: 289301-289301
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Computational Protocol for Screening GPI-anchored Proteins2009
- Author(s)
  Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Katsuhiko Kitamoto, Kentaro Shimizu
- Journal Title
  
  Proceedings of the First International ConBerence onBioinlbrmatics and Computational Biology (掲載確定)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016006
[Journal Article] Accurate prediction of native tertiary structure of protein using molecular dynamics simulation with the aid of the knowledge of secondary structures2009
- Author(s)
  Tadaomi Furuta, Kentaro Shimizu, Tohru Terada
- Journal Title
  
  Chemical Physics Letters 472
  
  Pages: 134-139
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016006
[Journal Article] Accurate prediction of native tertiary structure of protein using molecular dynamics simulation with the aid of the knowledge of secondary structures2009
- Author(s)
  Tadaomi Furuta, Kentaro Shimizu,Tohru Terada
- Journal Title
  
  Chemical Physics Letters 472
  
  Pages: 134-139
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Comprehensive analysis of sequence-structure relationships in the loop regions of proteins2009
- Author(s)
  S.Nakamura, K.Shimizu
- Journal Title
  
  GIW 2009 23
  
  Pages: 106-116
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Computational Protocol for Screening GPI-anchored Proteins, Proceedings of the First International Conference on Bioinformatics and Computational Biology (BICoB)2009
- Author(s)
  W.Cao, K.Sumikoshi, T.Terada, S.Nakamura, K.Kitamoto, K.Shimizu
- Journal Title
  
  Springer Lecture Notes in Bioinformatics Series 5462
  
  Pages: 164-175
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Accurate prediction of native tertiary structure of protein using molecular dynamics simulation with the aid of the knowledge of secondary structures2009
- Author(s)
  T.Furuta, K.Shimizu, T.Terada
- Journal Title
  
  Chemical Physics Letters 472
  
  Pages: 134-139
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Refinement of comparative models of protein structure by using multicanonical molecular dynamics simulations2008
- Author(s)
  R.Ishitani, T.Terada, K.Shimizu
- Journal Title
  
  Molecular Simulation 34
  
  Pages: 327-336
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Prediction of protein-protein interaction sites using only sequence information and using both sequence and structural information2008
- Author(s)
  M.Kakuta, S.Nakamura, K.Shimizu
- Journal Title
  
  IPSJ Transactions on Bioinformatics 49
  
  Pages: 25-35
- NAID
  110006684907
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Highly accurate method for ligand-binding site prediction in unbound state (apo) protein structures2008
- Author(s)
  Mizuki Morita, Shugo Nakamura, Kentaro Shimizu
- Journal Title
  
  PROTEINS : Structure, Function, and Bioinformatics 73
  
  Pages: 468-479
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016006
[Journal Article] Refinement of comparative models of protein structure by using multicanonical molecular dynamics simulations2008
- Author(s)
  Ryuuchiro Ishitani, Tohru Terada, Kehtaro Shimizu
- Journal Title
  
  Molecular Simulation 34
  
  Pages: 327-336
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] A compahson of generahzed Born methods in folding simulations2008
- Author(s)
  Tohru Terada, Kentaro Shimizu
- Journal Title
  
  Chemical Physics Letters 460
  
  Pages: 295-299
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] Highly accurate method for ligand-binding site prediction in unbound state (apo) protein structures2008
- Author(s)
  M.Morita, S.Nakamura, K.Shimizu
- Journal Title
  
  PROTEINS: Structure, Function, and Bioinformatics 73, 2
  
  Pages: 468-479
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500269
[Journal Article] IgE^b immune complexes activate macrophages through Fc ^γRIV binding2007
- Author(s)
  Masayuki Hirano, Randall S. Davis, W. David Fine, Shugo Nakamura, Kentaro Shimizu, Hirokazu Yagi, Koichi Kato, Robert P. Stephan, Max D. Cooper
- Journal Title
  
  Nature Immunology 8
  
  Pages: 762-771
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Mechanism of the difference in the binding affinity of E.coli tRNAGln to glutaminyl-tRNA synthetase caused by non-interface nucleotides in variable loop2007
- Author(s)
  Satoshi Yamazaki, Shugo Nakamura, Tohru Terada, Kentaro Shimizu
- Journal Title
  
  Biophysical Journal 92
  
  Pages: 192-200
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Folding free-energy landscape of a 10-residue mini-protein, chignolin2006
- Author(s)
  Daisuke Satoh, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
- Journal Title
  
  FEBS Letters 580
  
  Pages: 3422-3426
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] A multicanonical ab initio molecular dynamics method : application to conformation sampling of alanine tripeptide2006
- Author(s)
  Ryota Jono, Tohru Terada, Kentaro Shimizu
- Journal Title
  
  Chemical Physics Letters 432
  
  Pages: 306-312
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Insight of the Signal Motif of GPI-(like)-anchored Proteins by Using SVM2006
- Author(s)
  Wei Cao, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
- Journal Title
  
  Proceedings of the 2006 International Conference on Bioinformatics and Computational Biology(BIOCOMP'06)
  
  Pages: 541-546
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Potential for Assessing Quality of Protein Structure hated on Contact Number Prediction2006
- Author(s)
  Takashi Ishida, Shugo Nakamura, Kentaro Shimizu
- Journal Title
  
  PROTEINS : Structure, Function, and Bioinformatics 64, 4
  
  Pages: 940-947
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Evaluation of efficiency of reference potential spatial warping algorithm in conformational sampling of peptides2006
- Author(s)
  Ryuichiro Ishitani, Tohru Terada, Kentaro Shimizu
- Journal Title
  
  Journal of Chemical Physics 124
  
  Pages: 214902-214902
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] High-precision Geometric Modeling of 3D Artifacts for Virtual Restoration2006
- Author(s)
  Junta Doi, Kentaro Shimizu, Wataru Sato, Shinji Morishita
- Journal Title
  
  Proceedings of the IEEE International Conference on Virtual Environments, Human-computer Interfaces, and Measurement Systems
  
  Pages: 136-141
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Identification of GPI-(like) -anchored Proteins by using SVM2006
- Author(s)
  Wei Cao, Kentaro Shimizu
- Journal Title
  
  Proceedings of the First International Multi-symposiums of Computer Science and Computational Sciences(IMSCCS'06)
  
  Pages: 711-715
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] A fast protein-protein docking algorithm using series expansion in terms of spherical basis functions2005
- Author(s)
  Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
- Journal Title
  
  Proceedings of the 16th International Conference on Genome Informatics(GIW2005) 16
  
  Pages: 161-173
- NAID
  130003997422
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Highly accurate method for ligand-binding site prediction in unbound state(apo) protein structures
- Author(s)
  Mizuki Morita, Shugo Nakamura, Kentaro Shimizu
- Journal Title
  
  PROTEINS : Structure, Function, and Bioinformatics, accepted
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Understanding the roles of amino acid residues in tertiary structure formation of chignolin by using molecular dynamics simulation
- Author(s)
  Tohru Terada, Daisuke Satoh, Tsutomu Mikawa, Yutaka Ito, Kentaro Shimizu
- Journal Title
  
  PROTEINS : Structure, Function, and Bioinformatics, accepted
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Journal Article] Refinement of comparative models of protein structure by using multicanonical molecular dynamics simulations
- Author(s)
  Ryuichiro Ishitani, Tohru Terada, Kentaro Shimizu
- Journal Title
  
  Molecular Simulation 34, 3
  
  Pages: 327-336
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Presentation] Prediction of antihypertensive activity of peptides using machine learning2022
- Author(s)
  1.Kazushi Tamura, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu
- Organizer
  第60回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-21K12122
[Presentation] P-41Trans-AVPGAN: Transformerネットワークを用いた対的生成ネットワークによる抗ウイルスペプチド生成2021
- Author(s)
  Kano Hasegawa, Yoshitaka Moriwaki, Tohru Terada and Kentaro Shimizu
- Organizer
  2021年日本バイオインフォマティクス学会年会
- Data Source
  KAKENHI-PROJECT-21K12122
[Presentation] Identifying MoRFs in Disordered Protein Using Enlarged Conserved Features2018
- Author(s)
  C. Fang, A. Tian, K. Shimizu
- Organizer
  2018 6th International Conference on Bioinformatics and Computational Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17F17050
[Presentation] 位置特異的スコアリングマトリックスとサポートベクターマシーンを用いた脂質結合タンパク予測手法の開発2014
- Author(s)
  植木快、番野雅城、中村周吾、清水謙多郞
- Organizer
  第14回日本蛋白質科学会年会
- Place of Presentation
  横浜産貿ホールマリネリア（神奈川県、横浜市）
- Year and Date
  2014-06-27
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] PROTEIN-LIGAND BINDING SIMULATIONWITHTHE MARTINI COARSE-GRAINED FORCE FIELD.2014
- Author(s)
  Tatsuki Negami, Tohru Terada, Kentaro Shimizu
- Organizer
  Biophysical Society, 58th Annual Meeting
- Place of Presentation
  サンフランシスコ（アメリカ）
- Year and Date
  2014-02-18
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] タンパク質の複合体構造・相互作用に関する総合的な予測・解析/Prediction and analysis of protein complex structures and protein interactions2014
- Author(s)
  清水謙多郞、寺田透
- Organizer
  第14回日本蛋白質科学会年会
- Place of Presentation
  ワークピア横浜（神奈川県、横浜市）
- Year and Date
  2014-06-25
- Invited
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] The factors determining protein-ligand binding processes revealed by comparative coarse-grained simulations2014
- Author(s)
  Tatsuki Negami, Tohru Terada, Kentaro Shimizu
- Organizer
  第52回日本生物物理学会年会
- Place of Presentation
  札幌コンベンションセンター（北海道、札幌市）
- Year and Date
  2014-09-26
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] Structural insight into the heme-transfer mechanism between Isd proteins in Staphylococcus aureus2014
- Author(s)
  Yoshitaka Moriwaki, Tohru Terada, Jose M. M. Caaveiro, Kouhei Tsumoto, Kentaro Shimizu
- Organizer
  第52回日本生物物理学会年会
- Place of Presentation
  札幌コンベンションセンター（北海道、札幌市）
- Year and Date
  2014-09-26
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] HEME-TRANSFER MECHANISM OF STRUCTURALLY SIMILAR ISD NEAT DOMAINS OF STAPHYLOCOCCUS AUREUS EXHIBITING DIFFERENT AFFINITIES FOR HEME.2014
- Author(s)
  Yoshitaka Moriwaki, Tohru Terada, Jose M. M. Caaveiro, Yousuke Takaoka, Itaru Hamachi, Kouhei Tsumoto, Kentaro Shimizu
- Organizer
  Biophysical Society, 58th Annual Meeting
- Place of Presentation
  サンフランシスコ（アメリカ）
- Year and Date
  2014-02-19
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] Effect of basis selection in reconstructing NMR spectra using compressed sensing2014
- Author(s)
  Kazuya Sumikoshi, Teppei Ikeya, Yutaka Ito, Kentaro Shimizu
- Organizer
  第52回日本生物物理学会年会
- Place of Presentation
  札幌コンベンションセンター（北海道、札幌市）
- Year and Date
  2014-09-25
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] 黄色ブドウ球菌のヘム輸送蛋白質群Isd system におけるその構造類似性とヘムの不可逆輸送に関する考察2013
- Author(s)
  Yoshitaka Moriwaki, Tohru Terada, Jose M. M. Caaveiro, Yousuke Takaoka, Itaru Hamachi, Kouhei Tsumoto, Kentaro Shimizu
- Organizer
  第13回日本蛋白質科学会年会
- Place of Presentation
  とりぎん文化会館（鳥取県鳥取市）
- Year and Date
  2013-06-12
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] 蛋白質立体構造および相互作用の予測2013
- Author(s)
  清水謙多郎
- Organizer
  第４回神経科学と構造生物学の融合研究会
- Place of Presentation
  岡崎コンファレンスセンター（愛知県岡崎市）
- Year and Date
  2013-11-19
- Invited
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] Development of system that predict sugar binding protein and sugar binding site based on protein sequence using support vector machine.2013
- Author(s)
  番野　雅城、込山　悠介、中村　周吾、清水　謙多郎
- Organizer
  日本バイオインフォマティクス学会 2013年年会
- Place of Presentation
  タワーホール船堀（東京都江戸川区）
- Year and Date
  2013-10-29
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] 圧縮センシングを用いたＮＭＲスペクトルの復元法2013
- Author(s)
  Kazuya Sumikoshi, Teppei Ikeya, Yutaka Ito, Kentaro Shimizu
- Organizer
  日本生物物理学会　第51回年会
- Place of Presentation
  国立京都国際会館（京都府京都市）
- Year and Date
  2013-10-29
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] 黄色ブドウ球菌のIsd-NEATドメイン間におけるヘム輸送についての考察2013
- Author(s)
  Yoshitaka Moriwaki, Tohru Terada, Jose M. M. Caaveiro, Yousuke Takaoka, Itaru Hamachi, Kouhei Tsumoto, Kentaro Shimizu
- Organizer
  日本生物物理学会　第51回年会
- Place of Presentation
  国立京都国際会館（京都府京都市）
- Year and Date
  2013-10-30
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] 代謝型グルタミン酸受容体の活性化過程の動的モデルの構築2013
- Author(s)
  冨士原　海太、根上　樹、寺田　透、清水　謙多郎
- Organizer
  日本生物物理学会　第51回年会
- Place of Presentation
  国立京都国際会館（京都府京都市）
- Year and Date
  2013-10-30
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] UTProt: Database Integration and Tool Development for Interactomics Utilizing Biosemantics2013
- Author(s)
  込山　悠介、番野　雅城、Gul Saad、遣水　優行、植木　快、清水　謙多郎
- Organizer
  日本バイオインフォマティクス学会 2013年年会
- Place of Presentation
  タワーホール船堀（東京都江戸川区）
- Year and Date
  2013-10-29
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] MARTINI粗視化力場を用いたタンパク質-リガンド結合過程の比較シュミレーション2013
- Author(s)
  根上樹、寺田　透、清水　謙多郎
- Organizer
  日本生物物理学会　第51回年会
- Place of Presentation
  国立京都国際会館（京都府京都市）
- Year and Date
  2013-10-29
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] Sequence derived predictor of lipid-binding proteins with support vector machine2013
- Author(s)
  植木　快、込山　悠介、番野　雅城、中村　周吾、清水　謙多郎
- Organizer
  日本バイオインフォマティクス学会 2013年年会
- Place of Presentation
  タワーホール船堀（東京都江戸川区）
- Year and Date
  2013-10-29
- Data Source
  KAKENHI-PROJECT-23300109
[Presentation] Carbohydrate-binding proteins : A sequence-based prediction model and the database development2010
- Author(s)
  W.Cao, S.Someya, M.Kakuta, K.Sumikoshi, S.Nakamura, T.Terada, K. K. K.Shimizu
- Organizer
  The 2010 Annual Conference of the Japanese Society for Bioinformatics (JSBi2010)
- Place of Presentation
  九州大学(福岡)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] タンパク質-タンパク質ドッキングへの分子内フレキシビリティの導入2010
- Author(s)
  角越和也,中村周吾,清水謙多郎
- Organizer
  日本生物物理学会第48回年会
- Place of Presentation
  東北大学(宮城)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] 二次構造情報を取り入れた分子動力学法によるタンパク質立体構造予測法の一般性の検証2010
- Author(s)
  寺田透,西村麻彦,清水謙多郎
- Organizer
  日本生物物理学会第48回年会
- Place of Presentation
  東北大学(宮城)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] バイオロジカルユニットを考慮したリガンド結合タンパク質データベースの構築2009
- Author(s)
  池澤弘貴,森田瑞樹,清水謙多郎
- Organizer
  日本生物物理学会第47回年会
- Place of Presentation
  徳島文理大学(徳島)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] all-βタンパク質の二次構造拘束付きマルチカノニカル分子動力学シミュレーション2009
- Author(s)
  西村麻彦,寺田透,清水謙多郎
- Organizer
  日本生物物理学会第47回年会
- Place of Presentation
  徳島文理大学(徳島)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] BLASTと機械学習を用いたアミノ酸配列からのレクチン様タンパク質の予測2008
- Author(s)
  染谷星志, 角田将典, 森田瑞樹, 角越和也, 中村周吾, 清水謙多郎
- Organizer
  第31回日本分子生物学会年会
- Place of Presentation
  神戸
- Year and Date
  2008-12-12
- Data Source
  KAKENHI-PROJECT-20016006
[Presentation] 精密化プロセスを含めたタンパク質-タンパク質ドッキング手法の開発2008
- Author(s)
  角越和也,寺田透,中村周吾,清水謙多郎
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡国際会議場(福岡)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] タンパク質ペアに対するカーネル関数を用いたタンパク質間相互作用予測2008
- Author(s)
  角田将典,角越和也,中村周吾,清水謙多郎
- Organizer
  第8回日本蛋白質科学会年会
- Place of Presentation
  タワーホール船堀(東京)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] タンパク質のオーダー・ディスオーダーループの配列構造相関の解析2008
- Author(s)
  中村周吾,清水謙多郎
- Organizer
  第8回日本蛋白質科学会年会
- Place of Presentation
  タワーホール船堀(東京)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] 生体分子の溶媒効果:マルチカノニカルQM/MM-MDによる研究2008
- Author(s)
  城野亮太,渡邊佑輔,清水謙多郎,寺田透
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡
- Year and Date
  2008-12-05
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] 分子動力学シミュレーションによるWWドメインのフォールディング機構の解析2008
- Author(s)
  西村麻彦,西謙一郎,寺田透,清水謙多郎
- Organizer
  第8回日本蛋白質科学会年会
- Place of Presentation
  タワーホール船堀(東京)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] 生体分子の溶媒効果:マルチカノニカルQM/MM-MDによる研究2008
- Author(s)
  城野亮太,渡邊佑輔,清水謙多郎,寺田透
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡国際会議場(福岡)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] タンパク質構造予測2008
- Author(s)
  清水謙多郎
- Organizer
  JSTゲノムリテラシー講座
- Place of Presentation
  JSTサイエンスプラザ(東京)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] ドメイン配列を用いたタンパク質間相互作用予測2008
- Author(s)
  角田将典,角越和也,中村周吾,清水謙多郎
- Organizer
  日本生物物理学会第46回年会
- Place of Presentation
  福岡国際会議場(福岡)
- Data Source
  KAKENHI-PROJECT-20500269
[Presentation] Sequence-structure correlation analysis for protein loop regions2007
- Author(s)
  Shugo Nakamura, Mizuki Morita, Masanori Kakuta, Kentaro Shimizu
- Organizer
  Forty-Fifth Annual Meeting of the Biophysical Society of Japan, 2P004
- Place of Presentation
  Yokohama
- Year and Date
  2007-12-22
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Presentation] Protein-protein docking simulations2006
- Author(s)
  Kentaro Shimizu
- Organizer
  Symposium of Institute for Protein Research, Osaka University
- Place of Presentation
  Osaka
- Year and Date
  2006-03-23
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Presentation] 蛋白質複合体のドッキングシミュレーション2006
- Author(s)
  清水謙多郎
- Organizer
  大阪大学蛋白質研究所セミナー「生体分子構造情報の時間軸への展開による生命機能の解読」
- Place of Presentation
  大阪
- Year and Date
  2006-03-23
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Presentation] Protein tertiary structure prediction based on contact number prediction2006
- Author(s)
  Takashi Ishida, Shugo Nakamura, Kentaro Shimizu
- Organizer
  Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan
- Place of Presentation
  Okinawa
- Year and Date
  2006-11-14
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Presentation] Improving efficiency of conformation sampling in multicanonical molecular dynamics simulation2006
- Author(s)
  Tohru Terada, Kentaro Shimizu
- Organizer
  Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan, 46, 1P581
- Place of Presentation
  Okinawa
- Year and Date
  2006-11-13
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Presentation] Folding simulation of the B-domain of staphylococcal protein A2006
- Author(s)
  Ken-ichiro Nishi, Tohru Terada, Kentaro Shimizu
- Organizer
  Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan, 46, 1P573
- Place of Presentation
  Okinawa
- Year and Date
  2006-11-13
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191
[Presentation] Protein structure refinement by using multicanonical molecular dynamics simulation2005
- Author(s)
  Ryuichiro Ishitani, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
- Organizer
  Forty-Third Annual Meeting of the Biophysical Society of Japan, 1P008
- Place of Presentation
  Sapporo
- Year and Date
  2005-11-23
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17500191

1. NAKAMURA Shugo (90272442)

# of Collaborated Projects: 17 results

# of Collaborated Products: 26 results
2. TERADA Tohru (40359641)

# of Collaborated Projects: 7 results

# of Collaborated Products: 23 results
3. SUMIKOSHI Kazuya (90431832)

# of Collaborated Projects: 3 results

# of Collaborated Products: 4 results
4. 池口満徳 (60261955)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
5. 伊藤素行 (20377906)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
6. KAMEDA Hisao (10011660)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. KAKUDA Hiroyasu (70152600)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. TERASHIMA Motoaki (20114928)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. KASAI Takumi (70027382)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. ASHIHARA Hyo (00242347)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 砂原秀樹 (20206577)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. 青柳龍也 (40202494)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 中山泰一 (70251709)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. 高橋広夫 (30454367)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 佐々木博己 (60235265)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. 福吉修一 (10456410)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. 田胡和哉

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. 張勇兵

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
19. FANG CHUN

# of Collaborated Projects: 1 results

# of Collaborated Products: 9 results
20. KADOTA Koji

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
21. 西山智明

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Shimizu Kentaro 清水 謙多郎

清水 謙多郎 シミズ ケンタロウ

SHIMIZU Kentaro 清水 謙多郎

清水 謙太郎 シミズ ケンタロウ

Research Projects

Research Products

Co-Researchers

非コード領域・タンパク構造情報を含むオミクス統合解析に基づく精密医療の実現

Principal Investigator

Project Period (FY)

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ゲノムジャンク領域にコードされる機能ペプチドの制御機構の情報学的推定と実験的検証

Principal Investigator

Project Period (FY)

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Research Institution

Docking prediction and design of peptides by molecluar simulation and deep learningPrincipal Investigator

Principal Investigator

Project Period (FY)

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Review Section

Research Institution

Prediction and analysis of intrinsically disordered regions in membrane proteinsPrincipal Investigator

Principal Investigator

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Development of protein-carbohydrate binding prediction systems and databasesPrincipal Investigator

Principal Investigator

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Research Institution

タンパク質相互作用のネットワーク予測から原子レベルの結合予測までの統合的研究Principal Investigator

Principal Investigator

Project Period (FY)

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Review Section

Research Institution

Database Development and Functional Analysis of Protein Disorder RegionsPrincipal Investigator

Principal Investigator

Project Period (FY)

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Research Institution

高精度のドッキング機能を有するタンパク質間相互作用予測システムの開発Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

高精度のドッキング機能を有するタンパク質間相互作用予測システムの開発Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of methods for high-resolution protein structure modeling and for model structure assessmentPrincipal Investigator

Principal Investigator

Project Period (FY)

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Research Institution

ホモロジーモデリングとアビニシオ法の統合による高精度タンパク質構造予測手法の開発Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

大規模分散データの真に透過で効率的な共有を実現する分散共有配列システムの開発Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

ホモロジーモデリングとアビニシオ法の統合による高精度タンパク質構造予測手法の開発Principal Investigator

Shimizu Kentaro 清水謙多郎

清水謙多郎シミズケンタロウ

SHIMIZU Kentaro 清水謙多郎

清水謙太郎シミズケンタロウ