Ishino Sonoko 石野園子

Researcher Number	80399740
Other IDs
Affiliation (based on the past Project Information) *help	2023: 九州大学, 農学研究院, 学術特定研究者 2018 – 2021: 九州大学, 農学研究院, 准教授
Review Section/Research Field	Principal Investigator Basic Section 38030:Applied biochemistry-related Except Principal Investigator Basic Section 43010:Molecular biology-related
Keywords	Principal Investigator アーキア / DNA修復 / ヌクレアーゼ / 極限環境微生物 / DNA切断酵素 / 遺伝子工学技術 / 遺伝子操作 / 超好熱性アーキア / DNA損傷 / 遺伝子破壊 … More Except Principal Investigator … More リボソームタンパク質 / タンパク質合成 / 翻訳 / リボソームストーク蛋白質 / YchF / EF1B / EF1A / 蛋白質合成 / 翻訳因子 / リボソームストーク / リボソーム蛋白質 / リボソーム Less

Study on a DNA repair mechanism in archaea.Principal Investigator
- Principal Investigator
  
  Ishino Sonoko
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 38030:Applied biochemistry-related
- Research Institution
  Kyushu University
Versatile molecular functions of the ribosomal stalk protein in translation cycle
- Principal Investigator
  
  Uchiumi Toshio
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43010:Molecular biology-related
- Research Institution
  Niigata University
Elucidation of DNA repair pathway involving the novel endonuclease derived from hyperthermophilic archaeaPrincipal Investigator
- Principal Investigator
  
  Ishino Sonoko
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 38030:Applied biochemistry-related
- Research Institution
  Kyushu University

All 2022 2021 2019 2018

All Journal Article Presentation

[Journal Article] A novel ribosome-dimerization protein found in the hyperthermophilic archaeon Pyrococcus furiosus using ribosome-associated proteomics2022
- Author(s)
  C. Yaeshima, N. Murata, S. Ishino, I. Sagawa, K. Ito, T. Uchiumi
- Journal Title
  
  Biochem. Biophys. Res. Commun.
  
  Volume: 593 Pages: 116-121
- DOI
  10.1016/j.bbrc.2022.01.043
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19H03155
[Journal Article] Replication protein A complex in Thermococcus kodakarensis interacts with DNA polymerases and helps their effective strand synthesis2019
- Author(s)
  Nagata Mariko、Ishino Sonoko、Yamagami Takeshi、Ishino Yoshizumi
- Journal Title
  
  Bioscience, Biotechnology, and Biochemistry
  
  Volume: 83 Issue: 4 Pages: 695-704
- DOI
  10.1080/09168451.2018.1559722
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18K05442, KAKENHI-PROJECT-16J02633, KAKENHI-PROJECT-18K06089
[Journal Article] Switch of the interactions between the ribosomal stalk and EF1A in the GTP- and GDP-bound conformations2019
- Author(s)
  Maruyama K., Imai H., Kawamura M., Ishino S., Ishino Y., Ito K., Uchiumi T.
- Journal Title
  
  Scientific Reports
  
  Volume: 9 Issue: 1 Pages: 14761-14761
- DOI
  10.1038/s41598-019-51266-x
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H03155
[Journal Article] New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures2018
- Author(s)
  Liu Ying、Brandt David、Ishino Sonoko、Ishino Yoshizumi、Koonin Eugene V.、Kalinowski Jorn、Krupovic Mart、Prangishvili David
- Journal Title
  
  Environmental Microbiology
  
  Volume: － Issue: 6 Pages: 2002-2014
- DOI
  10.1111/1462-2920.14479
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K05442, KAKENHI-PROJECT-18K06089
[Journal Article] The mesophilic archaeon Methanosarcina acetivorans counteracts uracil in DNA with multiple enzymes: EndoQ, ExoIII, and UDG2018
- Author(s)
  Shiraishi Miyako、Ishino Sonoko、Heffernan Matthew、Cann Isaac、Ishino Yoshizumi
- Journal Title
  
  Scientific Reports
  
  Volume: 8 Issue: 1 Pages: 1-14
- DOI
  10.1038/s41598-018-34000-x
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K05442, KAKENHI-PROJECT-18K06089
[Journal Article] Direct visualization of DNA baton pass between replication factors bound to PCNA2018
- Author(s)
  Mayanagi Kouta、Ishino Sonoko、Shirai Tsuyoshi、Oyama Takuji、Kiyonari Shinichi、Kohda Daisuke、Morikawa Kosuke、Ishino Yoshizumi
- Journal Title
  
  Scientific Reports
  
  Volume: 8 Issue: 1 Pages: 16209-16209
- DOI
  10.1038/s41598-018-34176-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K05442, KAKENHI-PROJECT-18K06081, KAKENHI-PROJECT-17H01818, KAKENHI-PROJECT-18K06089
[Journal Article] Elucidating functions of DP1 and DP2 subunits from the Thermococcus kodakarensis family D DNA polymerase2018
- Author(s)
  Takashima Natsuki、Ishino Sonoko、Oki Keisuke、Takafuji Mika、Yamagami Takeshi、Matsuo Ryotaro、Mayanagi Kouta、Ishino Yoshizumi
- Journal Title
  
  Extremophiles
  
  Volume: 23 Issue: 1 Pages: 161-172
- DOI
  10.1007/s00792-018-1070-3
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18K05442, KAKENHI-PROJECT-18K06089
[Presentation] Structural and functional analysis of the interaction between family D-DNA polymerase and CMG-like helicase in the replisome of Thermococcus kodakarensis2021
- Author(s)
  沖啓輔、永田麻梨子、山上健、沼田倫征、石野園子、大山拓次、石野良純
- Organizer
  第44回日本分子生物学会年会 Workshop “What is life in a microbe?”
- Invited
- Data Source
  KAKENHI-PROJECT-19H03155
[Presentation] Study on diversity of mismatch repair system in archaea.2019
- Author(s)
  Wataru Mine, Hanae Kudo, Takeshi Yamagami, Tomoyuki Numata, Patrick Forterre, Mart Krupovic, Yoshizumi Ishino, and Sonoko Ishino.
- Organizer
  15th International Congress on Thermophiles
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] 超好熱性アーキア由来クランプPCNA上で働くDNA複製タンパク質の生化学および構造の解析2019
- Author(s)
  石野園子、真柳浩太、白井　剛、清成信一、今井奈美子、大山拓次、山上　健、石野良純
- Organizer
  日本農芸化学会2019年度大会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] The nucS homologs in the genomes of hyperthermophilic archaea encode active mismatch-specific endonuclease, EndoMS2019
- Author(s)
  Takahiro Ichikawa, Enzo Petracco, Hanae Kudo, Takeshi Yamagami, Tomoyuki Numata, Yoshizumi Ishino, and Sonoko Ishino
- Organizer
  15th International Congress on Thermophiles
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] Reconstitution of endonuclease Q-mediated and endonuclease V-mediated repair pathways for deaminated base repair in the hyperthermophilic archaeon, Thermococcus kodakarensis.2019
- Author(s)
  Meika Harada, Mariko Nagata, Keisuke Oki, Rie Matsumi, Tamotsu Kanai, Haruyuki Atomi,Tomoyuki Numata, Miyako Shiraishi, Sonoko Ishino, and Yoshizumi Ishino
- Organizer
  15th International Congress on Thermophiles
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] アーキアの損傷塩基修復経路の生化学的、遺伝学的研究2019
- Author(s)
  原田明佳、永田麻梨子、沖啓輔、松見理恵、金井保、跡見晴幸、沼田倫征、石野園子、石野良純
- Organizer
  第42回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] アーキアのミスマッチ修復酵素Endonuclease MSとの相互作用因子として見出された8-Oxoguanine glycosylaseの機能解析2019
- Author(s)
  市川貴大、佐々木琢也、山上健、沼田倫征、石野園子、石野良純
- Organizer
  第42回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] 損傷塩基特異的Endonuclease MSによる二本鎖切断末端の可能な構造変換機構2019
- Author(s)
  峯渉、山上健、沼田倫征、石野園子、石野良純
- Organizer
  第42回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] 超好熱アーキアThermococcus kodakarensisのoriCおよびorc1/cdc6欠失変異体の単離とその性質2019
- Author(s)
  石野園子、松見理恵、John N. Reeve、石野良純
- Organizer
  第42回日本分子生物学会
- Invited
- Data Source
  KAKENHI-PROJECT-19H03155
[Presentation] Regulation of replication fork progression in the hyperthermophilic archaeon Thermococcus kodakarensis.2018
- Author(s)
  Mariko Nagata, Sonoko Ishino, Takeshi Yamagami, Yoshizumi Ishino
- Organizer
  OKAZAKI Fragment Memorial Symposium: Celebrating the 50th anniversary of the discontinuous DNA replication model
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] アーキア由来損傷塩基特異的エンドヌクレアーゼEndoQの変異体解析2018
- Author(s)
  石野園子、牧田成人、白石　都、山上　健、宮園健一、田之倉　優、石野良純
- Organizer
  極限環境生物学会2018年度（第19回）年会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] Structure-based mutational analysis of the lesion-specific endonuclease.2018
- Author(s)
  Sonoko Ishino, Ken-ichi Miyazono, Naruto Makita, Tomoko Ito, Masaru Tanokura and Yoshizumi Ishino
- Organizer
  Molecular Biology of Archaea 6 / EMBO Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] クレンアーキオータ門において機能的にヘリカーゼとプライマーゼを連結するタンパク質の検索2018
- Author(s)
  山上　健、瀬戸口勇登、沖　啓輔、石野園子、石野良純
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] Euryarchaea-specific RecJ-like protein may work in stalled fork repair with Hef.2018
- Author(s)
  Mariko Nagata, Sonoko Ishino, Takeshi Yamagami, Jan-Robert Simons,Tamotsu Kanai, Haruyuki Atomi, and Yoshizumi Ishino
- Organizer
  12th International Congress on Extremophiles
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] 超好熱性アーキアThermococcus kodakarensis由来ファミリーD DNAポリメラーゼの分子解剖による機能分布の解明2018
- Author(s)
  沖　啓輔、山上　健、永田麻梨子、高島夏希、真柳浩太、白井　剛、石野園子、石野良純
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] Replication protein A in Thermococcus kodakarensis functionally interacts with DNA polymerases2018
- Author(s)
  永田麻梨子、石野園子、山上健、石野良純
- Organizer
  平成30年度日本生化学会九州支部例会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] ミスマッチ特異的エンドヌクレアーゼEndoMS/NucSのDNA修復における役割2018
- Author(s)
  石野園子、工藤華枝、Stephane Skouloubris、Caroline l’Hermitte-Stead、Asmae Essadik、Jean Christophe Lambry、Hannu Myllykallio、石野良純
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] Biochemical and Structural analyses of replication proteins bound to PCNA2018
- Author(s)
  Sonoko Ishino, Kouta Mayanagi, Tsuyoshi Shirai, Shinichi Kiyonari, Namiko Imai, Takuji Oyama, and Yoshizumi Ishino
- Organizer
  12th International Congress on Extremophiles
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] Family D DNA polymerase tethers primase and helicase in the replisome in Thermococcus kodakarensis.2018
- Author(s)
  Keisuke Oki, Takeshi Yamagami, Mariko Nagata, Natsuki Takashima, Kouta Mayanagi, Sonoko Ishino, and Yoshizumi Ishino.
- Organizer
  12th International Congress on Extremophiles
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] アーキアのDNA複製進行時におけるMCMの活性制御2018
- Author(s)
  永田麻梨子、石野園子、山上　健、石野良純
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] クランプ分子と協調するDNAミスマッチ特異的切断酵素の進化2018
- Author(s)
  石野園子、Stephane Skouloubris、工藤華枝、Caroline l’Hermitte-Stead、Asmae Essadik、Jean-Christophe Lambry、石野良純、Hannu Myllykallio
- Organizer
  第31回日本Archaea研究会講演会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] アーキアに機能的なMutS/MutLタンパク質は存在するか？2018
- Author(s)
  峯　渉、工藤華枝、山上　健、石野良純、石野園子
- Organizer
  平成30年度日本生化学会九州支部例会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] クレンアーキオタにおけるレプリソーム構成タンパク質の探索2018
- Author(s)
  瀬戸口勇登、沖　啓輔、山上　健、石野園子、石野良純
- Organizer
  平成30年度日本生化学会九州支部例会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] DNAミスマッチ特異的切断酵素EndoMS/NucSはクランプ分子と協調してゲノムの安定性維持に働く2018
- Author(s)
  石野園子、Stephane Skouloubris、工藤華枝、Caroline l’Hermitte-Stead、Asmae Essadik、Jean-Christophe Lambry、石野良純、Hannu Myllykallio
- Organizer
  平成30年度日本生化学会九州支部例会
- Data Source
  KAKENHI-PROJECT-18K05442
[Presentation] 超好熱性アーキアThermococcus kodakarensisのレプリソーム形成機構解析2018
- Author(s)
  沖啓輔、永田麻梨子、高島夏希、山上健、石野園子、石野良純
- Organizer
  平成30年度日本生化学会九州支部例会
- Data Source
  KAKENHI-PROJECT-18K05442

1. Uchiumi Toshio (50143764)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
2. 伊東孝祐 (20502397)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
3. 西川周一 (10252222)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Ishino Sonoko 石野 園子

Research Projects

Research Products

Co-Researchers

Study on a DNA repair mechanism in archaea.Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Versatile molecular functions of the ribosomal stalk protein in translation cycle

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Elucidation of DNA repair pathway involving the novel endonuclease derived from hyperthermophilic archaeaPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] A novel ribosome-dimerization protein found in the hyperthermophilic archaeon Pyrococcus furiosus using ribosome-associated proteomics2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Replication protein A complex in Thermococcus kodakarensis interacts with DNA polymerases and helps their effective strand synthesis2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Switch of the interactions between the ribosomal stalk and EF1A in the GTP- and GDP-bound conformations2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The mesophilic archaeon Methanosarcina acetivorans counteracts uracil in DNA with multiple enzymes: EndoQ, ExoIII, and UDG2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Direct visualization of DNA baton pass between replication factors bound to PCNA2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Elucidating functions of DP1 and DP2 subunits from the Thermococcus kodakarensis family D DNA polymerase2018

Author(s)

Journal Title

DOI

Data Source

[Presentation] Structural and functional analysis of the interaction between family D-DNA polymerase and CMG-like helicase in the replisome of Thermococcus kodakarensis2021

Author(s)

Organizer

Data Source

[Presentation] Study on diversity of mismatch repair system in archaea.2019

Author(s)

Organizer

Data Source

[Presentation] 超好熱性アーキア由来クランプPCNA上で働くDNA複製タンパク質の生化学および構造の解析2019

Author(s)

Organizer

Data Source

[Presentation] The nucS homologs in the genomes of hyperthermophilic archaea encode active mismatch-specific endonuclease, EndoMS2019

Author(s)

Organizer

Data Source

[Presentation] Reconstitution of endonuclease Q-mediated and endonuclease V-mediated repair pathways for deaminated base repair in the hyperthermophilic archaeon, Thermococcus kodakarensis.2019

Author(s)

Organizer

Data Source

[Presentation] アーキアの損傷塩基修復経路の生化学的、遺伝学的研究2019

Author(s)

Organizer

Ishino Sonoko 石野園子

[Presentation] アーキアのミスマッチ修復酵素Endonuclease MSとの相互作用因子として見出された8-Oxoguanine glycosylaseの機能解析2019