Tamada Yoshinori 玉田嘉紀

… Alternative Names

玉田嘉紀タマダヨシノリ

TAMADA Yoshinori 玉田嘉紀

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Researcher Number	80435495
Other IDs
Affiliation (Current)	2025: 弘前大学, 医学研究科, 教授 2025: 京都大学, 医学研究科, 特定准教授
Affiliation (based on the past Project Information) *help	2022 – 2024: 弘前大学, 医学研究科, 教授 2019: 東京大学, 情報理工学(系)研究科, 助教 2016: 東京大学, 医科学研究所, 特任講師 2015: 東京大学, 大学院情報理工学系研究科, 助教 2012 – 2015: 東京大学, 情報理工学(系)研究科, 助教 2014: 東京大学, 大学院情報理工学研究科, 助教 2011: 東京大学, 情報理工学系研究科, 助教
Review Section/Research Field	Principal Investigator Basic Section 62010:Life, health and medical informatics-related / Intelligent informatics Except Principal Investigator Complex systems / Basic Section 63040:Environmental impact assessment-related / Basic Section 58080:Gerontological nursing and community health nursing-related / Basic Section 58030:Hygiene and public health-related: excluding laboratory approach
Keywords	Principal Investigator ベイジアンネットワーク / 遺伝子ネットワーク推定 / 連合学習 / MCMC / ベイジアンネットワーク推定 / 大規模並列計算 / 最適DAG探索アルゴリズム / 並列アルゴリズム / グラフ探索アルゴリズム Except Principal Investigator 機械学習 … More / 人工知能 / 統計的モデリング / バイオインフォマティクス / システム生物学 / がん / 予測手法 / 発生毒性 / 因果探索 / 化学物質 / 行動変容 / ヘルスリテラシー / 非アルコール性脂肪性肝疾患 / アルコール性肝疾患 / 予兆モデル / スクリーニング / 縦断調査 / NAFLD / ALD / 特定健診項目 / 脂肪肝 / 非侵襲的スクリーニング / 横断調査 / 疫学調査 / MRI / 疫学 / 変形性膝関節症 / 予後予測 / 早期 / 変経性膝関節症 / シークエンス解析 / 遺伝子ネットワーク / スーパーコンピュータ / 遺伝統計学 / ゲノム科学 Less

Development of innovative prediction methods for the developmental toxicity of chemicals using causal exploration with machine learning
- Principal Investigator
  
  福田秀子 (曽根秀子)
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 63040:Environmental impact assessment-related
- Research Institution
  Yokohama College of Pharmacy
人工知能による予後予測精度の高い早期変形性膝関節症診断基準作成にむけた疫学研究
- Principal Investigator
  
  佐々木英嗣
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 58030:Hygiene and public health-related: excluding laboratory approach
- Research Institution
  Hirosaki University
Social implementation trial of ALD/NAFLD predictive model to improve health literacy and promote behavior change
- Principal Investigator
  
  本村純
- Project Period (FY)
  2022 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 58080:Gerontological nursing and community health nursing-related
- Research Institution
  Meio University
連合学習による生体分子ネットワーク推定法の研究Principal Investigator
- Principal Investigator
  
  玉田嘉紀
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Hirosaki University
Research on parallel algorithms for large scale Bayesian network structure searchPrincipal Investigator
- Principal Investigator
  
  Tamada Yoshinori
- Project Period (FY)
  2015 – 2016
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Intelligent informatics
- Research Institution
  The University of Tokyo
Neodimensional exploration for cancer systems by supercomputing and innovative information technology
- Principal Investigator
  
  MIYANO SATORU
- Project Period (FY)
  2015 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  The University of Tokyo
Development of Systems Cancer Research by Computation and Simulation
- Principal Investigator
  
  MIYANO SATORU
- Project Period (FY)
  2010 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  The University of Tokyo

All 2023 2022 2020 2016 2015 2014 2013 2012 2011 2010

All Journal Article Presentation

[Journal Article] Variant analysis of prostate　cancer in Japanese patients and a new attempt to predict related biological　pathways2020
- Author(s)
  Kasajima R, Yamaguchi R, Shimizu E, Tamada Y, Niida A, Tremmel G, Kishida T,Aoki I, Imoto S, Miyano S, Uemura H, Miyagi Y
- Journal Title
  
  Oncol Rep.
  
  Volume: 43(3) Pages: 943-952
- DOI
  10.3892/or.2020.7481
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-15H05912
[Journal Article] 「京」を使った大規模データ解析によるがんのシステム異常の網羅的解析2016
- Author(s)
  宮野悟, 伊東聰, Heewon Park, 白石友一, 島村徹平, 玉田嘉紀, 井元清哉
- Journal Title
  
  実験医学増刊
  
  Volume: 34 Pages: 733-738
- Data Source
  KAKENHI-PROJECT-15K20965
[Journal Article] Efficient Parallel Algorithm for Optimal DAG Structure Search on Parallel Computer with Torus Network2016
- Author(s)
  H. Honda, Y. Tamada, R. Suda
- Journal Title
  
  Lecture Notes in Computer Science
  
  Volume: 10048 Pages: 483-502
- DOI
  10.1007/978-3-319-49583-5_37
- ISBN
  9783319495828, 9783319495835
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-15K20965
[Journal Article] The hnRNP-Htt axis regulates necrotic cell death induced by transcriptional repression through impaired RNA splicing2016
- Author(s)
  Y. Mao, T. Tamura, Y. Yuki, D. Abe, Y. Tamada, S. Imoto, H. Tanaka, H. Homma, K. Tagawa, S. Miyano and H. Okazawa
- Journal Title
  
  Cell Death and Disease
  
  Volume: 7 Issue: 4 Pages: e2207-e2207
- DOI
  10.1038/cddis.2016.101
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K20965, KAKENHI-PROJECT-16H02655
[Journal Article] Oncogenic roles of TOPK and MELK, and effective growth suppression by small molecular inhibitors in kidney cancer cells2015
- Author(s)
  T. Kato, H. Inoue, S. Imoto, Y. Tamada, T. Miyamoto, Y. Matsuo, Y. Nakamura and J.H. Park
- Journal Title
  
  Oncotarget
  
  Volume: 7 Issue: 14 Pages: 17652-17664
- DOI
  10.18632/oncotarget.7755
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K20965, KAKENHI-PLANNED-15H05912
[Journal Article] Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs2015
- Author(s)
  Nakata A, Yoshida R, Yamaguchi R, Yamauchi M, Tamada Y, Fujita A, Shimamura T, Imoto S, Higuchi T, Nomura M, Kimura T, Nokihara H, Higashiyama M, Kondoh K, Nishihara H, Tojo A, Yano S, Miyano S, Gotoh N
- Journal Title
  
  Scientific Report
  
  Volume: 5 Issue: 1 Pages: 13076-13076
- DOI
  10.1038/srep13076
- NAID
  120005764206
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15K18426, KAKENHI-PROJECT-15K20965, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H04294, KAKENHI-PROJECT-26640072, KAKENHI-PROJECT-25730173
[Journal Article] Lung adenocarcinoma subtypes definable by lung development-related miRNA expression profiles in association with clinicopathologic features2014
- Author(s)
  Arima C, Kajino T, Tamada Y, Imoto S, Shimada Y, Nakatochi M, Suzuki M, Isomura H, Yatabe Y, Yamaguchi T, Yanagisawa K, Miyano S, Takahashi T
- Journal Title
  
  Carcinogenesis
  
  Volume: 35(10) Pages: 2224-2231
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Vasohibin-1 is identified as a master-regulator of endothelial cell apoptosis using gene network analysis2013
- Author(s)
  Affara M, Sanders D, Araki H, Tamada Y, Dunmore B, Humphreys S, Imoto S, Savoie C, Miyano S, Kuhara S, Print C, Charnock-Jones DS
- Journal Title
  
  BMC Genomics
  
  Volume: 14(1) Issue: 1 Pages: 23-23
- DOI
  10.1186/1471-2164-14-23
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300099, KAKENHI-PLANNED-22134004
[Journal Article] Cell cycle gene networks are associated with melanoma prognosis2012
- Author(s)
  Wang L, Hurley D, Watkins W, Araki H, Tamada Y, Muthukaruppan A, Ranjard L, Derkac E, Imoto S, Miyano S, Crampin E, Print C
- Journal Title
  
  PLoS One
  
  Volume: 7(4) Issue: 4 Pages: e34247-e34247
- DOI
  10.1371/journal.pone.0034247
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300099, KAKENHI-PLANNED-22134004
[Journal Article] Gene network inference and visualization tools for biologists: application to new human transcriptome datasets2012
- Author(s)
  Hurley D, Araki H, Tamada Y, （４名）, Imoto S, Yasuda K, Tomiyasu Y, Tashiro K, Savoie C, Cho V, Smith S, Kuhara S, Miyano S, Charnock-Jones DS, Crampin EJ, Print CG
- Journal Title
  
  Nucleic Acids Res
  
  Volume: 40(6) Issue: 6 Pages: 2377-2398
- DOI
  10.1093/nar/gkr902
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Computational gene network analysis reveals TNF-induced angiogenesis2012
- Author(s)
  Ogami K, Yamaguchi R, Imoto S, Tamada Y, Araki H, Print C, Miyano S
- Journal Title
  
  BMC Systems Biology
  
  Volume: 6(Supple 2) Issue: S2
- DOI
  10.1186/1752-0509-6-s2-s12
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24700292, KAKENHI-PLANNED-22134004
[Journal Article] SiGN : large-scale gene network estimation environment for high performance computing2011
- Author(s)
  Tamada Y, Shimamura T, Yamaguchi R, Imoto S, Nagasaki M, Miyano S
- Journal Title
  
  Genome Informatics
  
  Volume: 25 Pages: 40-52
- NAID
  130004567842
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] SiGN-SSM : open source parallel software for estimating gene networks with state space models2011
- Author(s)
  Tamada Y, Yamaguchi R, Imoto S, Hirose O, Yoshida R, Nagasaki M, Miyano S
- Journal Title
  
  Bioinformatics
  
  Volume: 27(8) Issue: 8 Pages: 1172-1173
- DOI
  10.1093/bioinformatics/btr078
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004, KAKENHI-PROJECT-22300099, KAKENHI-PROJECT-22700308, KAKENHI-PROJECT-23700346
[Journal Article] Parallel algorithm for learning optimal Bayesian network structure2011
- Author(s)
  Tamada Y, Imoto S, Miyano S
- Journal Title
  
  J Machine Learning Research
  
  Volume: 12 Pages: 2437-2459
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Estimating genome-wide gene networks using nonparametric Bayesian network models on massively parallel computers2011
- Author(s)
  Tamada Y, Imoto S, Araki H, Nagasaki M, Print C, Charnock-Jones DS, Miyano S
- Journal Title
  
  IEEE/ACM Transactions on Computational Biology and Bioinformatics
  
  Volume: 8(3) Issue: 3 Pages: 683-697
- DOI
  10.1109/tcbb.2010.68
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Collocation-based sparse estimation for constructing dynamic gene networks2010
- Author(s)
  Shimamura, T., Imoto, S., Nagasaki, M., Yamauchi, M., Yamaguchi, R., Fujita, A., Tamada, Y, Gotoh, N., Miyano, S.
- Journal Title
  
  Genome Informatics
  
  Volume: 24 Pages: 164-178
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Presentation] INGOR / SiGN-BN - Gene Network Estimation Software2023
- Author(s)
  玉田嘉紀, 中澤麻衣, 太田可純, 原田陽平, 藤本健二, 鎌田真由美, 奥野恭史
- Organizer
  生命医薬情報学連合大会 (IIBMP 2023)
- Data Source
  KAKENHI-PROJECT-22K12238
[Presentation] A novel method for gene knockdown simulation using Markov chain Monte Carlo methods (MCMC)2023
- Author(s)
  中澤麻衣, 玉田嘉紀, 奥野恭史
- Organizer
  生命医薬情報学連合大会 (IIBMP 2023)
- Data Source
  KAKENHI-PROJECT-22K12238
[Presentation] シングル・サンプル遺伝子ネットワーク推定＆解析技術2022
- Author(s)
  Yoshinori Tamada
- Organizer
  第11回生命医薬情報学連合大会 (IIBMP 2022)
- Data Source
  KAKENHI-PROJECT-22K12238
[Presentation] Cancer Genome Research with Gene Network Analysis using Bayesian Networks2015
- Author(s)
  Y. Tamada
- Organizer
  The second Workshop on Advanced Methodologies for Bayesian Networks
- Place of Presentation
  Hiyoshi Campus, Keio University, 神奈川県横浜市
- Year and Date
  2015-11-18
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K20965
[Presentation] The Cancer Network Galaxy: A Database of Cancer Gene Networks Estimated by SiGN-BN with K2015
- Author(s)
  Y. Tamada, G. Tremmel, A. Niida, R. Yamaguchi, S. Imoto, and S. Miyano
- Organizer
  Supercomputational Life Science 2015
- Place of Presentation
  Takeda Hall, The University of Tokyo, 東京都文京区
- Year and Date
  2015-10-20
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K20965

1. MIYANO SATORU (50128104)

# of Collaborated Projects: 2 results

# of Collaborated Products: 10 results
2. IMOTO Seiya (10345027)

# of Collaborated Projects: 2 results

# of Collaborated Products: 10 results
3. YAMAGUCHI Rui (90380675)

# of Collaborated Projects: 2 results

# of Collaborated Products: 6 results
4. SHIRAISHI Yuichi (70516880)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
5. SHIMAMURA Teppei (00623943)

# of Collaborated Projects: 2 results

# of Collaborated Products: 3 results
6. NAGASAKI Masao (90396862)

# of Collaborated Projects: 1 results

# of Collaborated Products: 4 results
7. HIGUCHI Tomoyuki (70202273)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. KAYANO Mitsunori (20590095)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. GOTOH Noriko (10251448)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
10. PARK HEEWON (70756642)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 新井田厚司 (00772493)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
12. 片山琴絵 (40581195)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 張耀中 (60817138)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. 佐々木英嗣 (60587038)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 中路重之 (10192220)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. 千葉大輔 (70587055)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. 石橋恭之 (80292142)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. 石橋恭太 (80898388)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
19. 本村純 (50632999)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
20. 奥野恭史 (20283666)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
21. 花城和彦 (20284961)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
22. 池松真也 (40442488)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
23. 神谷義人 (50812830)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
24. 砂川昌範 (70325835)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
25. 奥本正 (70330727)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
26. 立津慶幸 (70833911)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
27. 島康貴 (60838556)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
28. 内野詠一郎 (20820905)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
29. 中澤麻衣 (90971599)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
30. 福田秀子 (60280715)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
31. 加藤毅 (40401236)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Tamada Yoshinori 玉田 嘉紀

玉田 嘉紀 タマダ ヨシノリ

TAMADA Yoshinori 玉田 嘉紀

Research Projects

Research Products

Co-Researchers

Development of innovative prediction methods for the developmental toxicity of chemicals using causal exploration with machine learning

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

人工知能による予後予測精度の高い早期変形性膝関節症診断基準作成にむけた疫学研究

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Social implementation trial of ALD/NAFLD predictive model to improve health literacy and promote behavior change

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

連合学習による生体分子ネットワーク推定法の研究Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Research on parallel algorithms for large scale Bayesian network structure searchPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Neodimensional exploration for cancer systems by supercomputing and innovative information technology

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of Systems Cancer Research by Computation and Simulation

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Variant analysis of prostate cancer in Japanese patients and a new attempt to predict related biological pathways2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] 「京」を使った大規模データ解析によるがんのシステム異常の網羅的解析2016

Author(s)

Journal Title

Data Source

[Journal Article] Efficient Parallel Algorithm for Optimal DAG Structure Search on Parallel Computer with Torus Network2016

Author(s)

Journal Title

DOI

ISBN

Data Source

[Journal Article] The hnRNP-Htt axis regulates necrotic cell death induced by transcriptional repression through impaired RNA splicing2016

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Oncogenic roles of TOPK and MELK, and effective growth suppression by small molecular inhibitors in kidney cancer cells2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs2015

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] Lung adenocarcinoma subtypes definable by lung development-related miRNA expression profiles in association with clinicopathologic features2014

Tamada Yoshinori 玉田嘉紀

玉田嘉紀タマダヨシノリ

TAMADA Yoshinori 玉田嘉紀

[Journal Article] Variant analysis of prostate　cancer in Japanese patients and a new attempt to predict related biological　pathways2020