andoh yoshimichi 安藤嘉倫

… Alternative Names

安藤嘉倫アンドウヨシミチ

Andoh Yoshimichi 安藤嘉倫

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Researcher Number	80509076
Other IDs
Affiliation (Current)	2026: 国立研究開発法人物質・材料研究機構, 技術開発・共用部門, 主任エンジニア
Affiliation (based on the past Project Information) *help	2022 – 2024: 国立研究開発法人物質・材料研究機構, 技術開発・共用部門, 主任エンジニア 2018 – 2019: 名古屋大学, 工学研究科, 特任准教授 2016 – 2017: 名古屋大学, 工学研究科, 特任講師
Review Section/Research Field	Principal Investigator Basic Section 60100:Computational science-related / Biophysics
Keywords	Principal Investigator 分子動力学計算 / 長距離相互作用 / 計算スケールの拡大 / 古典分子動力学計算 / 回帰モデル / GPGPU / 機械学習ポテンシャル / 計算の高速化 / 長距離静電相互作用 / 表面・界面物性 … More / 統計力学 / 生物物理 / 化学物理 / 非対称な脂質組成 / 脂質ラフト / 膜物性 / スフィンゴ脂質 / グリセロリン脂質 / 非対称性な脂質組成 / 脂質二重層膜 / 膜流動性 / 非対称な脂質分布 / ミクロドメイン / コレステロール / スフィンゴミエリン / リン脂質 / 脂質組成の非対称性 / 肝臓細胞 / 細胞膜 Less

Basic research for an extension of space-scale in classical molecular dynamics calculations by introducing machine-learning potentialPrincipal Investigator
- Principal Investigator
  
  安藤嘉倫
- Project Period (FY)
  2022 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 60100:Computational science-related
- Research Institution
  National Institute for Materials Science
Molecular dynamics study of membrane properties of lipid bilayers with asymmetric lipid compositionPrincipal Investigator
- Principal Investigator
  
  Andoh Yoshimichi
- Project Period (FY)
  2016 – 2019
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Biophysics
- Research Institution
  Nagoya University

All 2024 2023 2020 2019 2018 2017 2016

All Journal Article Presentation Book

[Book] The Art of High Performance Computing for Computational Science: Advanced techniques and examples for materials science, vol. 2, 117-157. Acceleration of Classical Molecular Dynamics Simulations2019
- Author(s)
  M. Geshi (Ed.), Y Andoh, N Yoshii, J Jung, Y Sugita (Chapter 5)
- Total Pages
  41
- Publisher
  Springer Singapore
- ISBN
  9789811398018
- Data Source
  KAKENHI-PROJECT-16K21094
[Book] 月刊細胞 50巻 (3), 43-44. 分子シミュレーションによる非対称な脂質組成をもった脂質二重層膜物性の解明2018
- Author(s)
  安藤嘉倫
- Total Pages
  2
- Publisher
  ニューサイエンス社
- Data Source
  KAKENHI-PROJECT-16K21094
[Book] 計算科学のためのHPC技術22017
- Author(s)
  下司雅章(編)、安藤嘉倫(第6章分担)
- Total Pages
  32
- Publisher
  大阪大学出版会
- ISBN
  9784872595871
- Data Source
  KAKENHI-PROJECT-16K21094
[Journal Article] 分子動力学計算の大規模並列化のための技術 42024
- Author(s)
  安藤嘉倫
- Journal Title
  
  Ensemble
  
  Volume: 26 Issue: 1 Pages: 55-60
- DOI
  10.11436/mssj.26.55
- ISSN
  1884-5088, 1884-6750
- Year and Date
  2024-01-31
- Language
  Japanese
- Open Access
- Data Source
  KAKENHI-PROJECT-22K12065
[Journal Article] An exa-scale high-performance molecular dynamics simulation program: MODYLAS2023
- Author(s)
  Yoshimichi Andoh, Shin-Ichi Ichikawa, Tatsuya Sakashita, Kazushi Fujimoto, Noriyuki Yoshii, Tetsuro Nagai, Zhiye Tang, Susumu Okazaki
- Journal Title
  
  The Journal of Chemical Physics
  
  Volume: 158 Issue: 19 Pages: 194803-194803
- DOI
  10.1063/5.0144361
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22K12065, KAKENHI-PROJECT-22H00332
[Journal Article] 分子動力学計算の大規模並列化のための技術 12023
- Author(s)
  安藤嘉倫
- Journal Title
  
  アンサンブル
  
  Volume: 25 Pages: 46-51
- Open Access
- Data Source
  KAKENHI-PROJECT-22K12065
[Journal Article] 「分子動力学計算の大規模並列化のための技術 2」2023
- Author(s)
  安藤嘉倫
- Journal Title
  
  Ensemble
  
  Volume: 25 Issue: 2 Pages: 149-157
- DOI
  10.11436/mssj.25.149
- ISSN
  1884-5088, 1884-6750
- Year and Date
  2023-04-30
- Language
  Japanese
- Open Access
- Data Source
  KAKENHI-PROJECT-22K12065
[Journal Article] 分子動力学計算の大規模並列化のための技術 32023
- Author(s)
  安藤嘉倫
- Journal Title
  
  Ensemble
  
  Volume: 25 Issue: 3 Pages: 223-230
- DOI
  10.11436/mssj.25.223
- ISSN
  1884-5088, 1884-6750
- Year and Date
  2023-07-31
- Language
  Japanese
- Open Access
- Data Source
  KAKENHI-PROJECT-22K12065
[Journal Article] Molecular dynamics study of lipid bilayers modeling outer and inner leaflets of plasma membranes of mouse hepatocytes. I: Differences in physicochemical properties between the two leaflets2020
- Author(s)
  Yoshimichi Andoh, Shiho Hayakawa, and Susumu Okazaki
- Journal Title
  
  The Journal of Chemical Physics
  
  Volume: -
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K21094
[Journal Article] Extension of the fast multipole method for the rectangular cells with an anisotropic partition tree structure2020
- Author(s)
  Y. Andoh, N. Yoshii, S Okazaki
- Journal Title
  
  Journal of Computational Chemistry
  
  Volume: - Issue: 14 Pages: 1353-1367
- DOI
  10.1002/jcc.26180
- NAID
  120007127374
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K05748, KAKENHI-PROJECT-16K21094
[Journal Article] Fast multipole method for three dimensional systems with periodic boundary condition in two directions2020
- Author(s)
  N. Yoshii, Y. Andoh, S Okazaki
- Journal Title
  
  Journal of Computational Chemistry
  
  Volume: 41 Issue: 9 Pages: 940-948
- DOI
  10.1002/jcc.26141
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K05748, KAKENHI-PROJECT-16K21094
[Journal Article] All-atom Molecular Dynamics Simulation Study ofSelf-assemblies of Amphiphilic Molecules in Solution2019
- Author(s)
  ANDOH Yoshimichi、OKAZAKI Susumu
- Journal Title
  
  Oleoscience
  
  Volume: 19 Issue: 11 Pages: 447-453
- DOI
  10.5650/oleoscience.19.447
- NAID
  130007742439
- ISSN
  1345-8949, 2187-3461
- Language
  Japanese
- Open Access
- Data Source
  KAKENHI-PROJECT-16K21094
[Journal Article] Molecular Behavior of Linear Alkylbenzene Sulfonate in Hydrated Crystal, Tilted Gel, and Liquid Crystal Phases Studied by Molecular Dynamics Simulation2019
- Author(s)
  Takeda Kosuke、Andoh Yoshimichi、Shinoda Wataru、Okazaki Susumu
- Journal Title
  
  Langmuir
  
  Volume: 35 Issue: 33 Pages: 10877-10884
- DOI
  10.1021/acs.langmuir.9b01607
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K21094
[Journal Article] Structure of Hydrated Crystal (Lc), Tilted Gel (Lβ′), and Liquid Crystal (Lα) Phases of Linear Alkylbenzene Sulfonate (LAS) Studied by X-ray Diffraction and Molecular Dynamics Simulation2019
- Author(s)
  Takeda Kosuke、Andoh Yoshimichi、Shinoda Wataru、Okazaki Susumu
- Journal Title
  
  Langmuir
  
  Volume: 35 Issue: 27 Pages: 9011-9019
- DOI
  10.1021/acs.langmuir.9b01199
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K21094
[Journal Article] Pressure tensor for electrostatic interaction calculated by fast multipole method with periodic boundary condition2018
- Author(s)
  Noriyuki Yoshii, Yoshimichi Andoh, Susumu Okazaki
- Journal Title
  
  Journal of Computational Chemistry
  
  Volume: 印刷中 Issue: 19 Pages: 1192-1199
- DOI
  10.1002/jcc.25179
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K05748, KAKENHI-PROJECT-16K21094
[Journal Article] Difference in molecular mechanisms governing changes in membrane properties of phospholipid bilayers induced by addition of nonionic and zwitterionic surfactants2018
- Author(s)
  Yoshimichi Andoh, Sakiho Kitou, Susumu Okazaki
- Journal Title
  
  Journal of Molecular Liquids
  
  Volume: 271 Pages: 933-941
- DOI
  10.1016/j.molliq.2018.09.018
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K21094
[Journal Article] A thread-level parallelization of pairwise additive potential and force calculations suitable for current many-core architectures2018
- Author(s)
  Y. Andoh, S. Suzuki, S. Ohshima, T. Sakashita, M. Ogino, T. Katagiri, N. Yoshii, S. Okazaki
- Journal Title
  
  Journal of Supercomputing
  
  Volume: 印刷中 Issue: 6 Pages: 2449-2469
- DOI
  10.1007/s11227-018-2272-2
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K05748, KAKENHI-PROJECT-16K21094, KAKENHI-PROJECT-17H02829
[Journal Article] Structural ordering of lipid bilayers induced by surfactant molecules with small hydrophilic head group2017
- Author(s)
  Andoh Yoshimichi、Mohamed Siti Nor Syafawani、Kitou Sakiho、Okazaki Susumu
- Journal Title
  
  Molecular Simulation
  
  Volume: 43 Issue: 13-16 Pages: 1247-1255
- DOI
  10.1080/08927022.2017.1319061
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K21094
[Journal Article] Evaluation of atomic pressure in the multiple time-step integration algorithm2017
- Author(s)
  Y Andoh, A. Yamada, N. Yoshii, S Okazaki
- Journal Title
  
  Journal of Computational Chemistry
  
  Volume: 38 Issue: 10 Pages: 704-713
- DOI
  10.1002/jcc.24731
- NAID
  120006305599
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26410012, KAKENHI-PROJECT-16K21094
[Presentation] 分子動力学計算と機械学習による機能性分子液体材料の特異な粘性挙動の解明2023
- Author(s)
  安藤嘉倫, 名倉和彦, 中西尚志, 袖山慶太郎
- Organizer
  第37回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-22K12065
[Presentation] 細胞膜内でのコレステロール分子側方凝集に関する理論的研究2019
- Author(s)
  安藤嘉倫、早川志保、岡崎進
- Organizer
  第42回溶液化学シンポジウム
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 汎用分子動力学計算ソフトウェアMODYLASへの自動チューニング技術適用の展望2019
- Author(s)
  安藤嘉倫
- Organizer
  第10回自動チューニング技術の現状と応用に関するシンポジウム
- Invited
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 非対称な脂質組成を持った脂質二重層膜モデル内での脂質分子側方凝集に関する理論的研究2019
- Author(s)
  安藤嘉倫, 早川志保, 岡崎進
- Organizer
  第10回生体界面研究会
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 次期スパコン「富岳」での大規模・長時間分子動力学計算実現のためのソフトウェアMODYLASの性能向上2019
- Author(s)
  安藤嘉倫、坂下達哉、張家超、朱喆、浦野諒、藤本和士、吉井範行、岡崎進
- Organizer
  第33回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 非対称な脂質組成を持った脂質二重層膜内での脂質分子側方凝集に関する理論的研究2019
- Author(s)
  安藤嘉倫、早川志保、岡崎進
- Organizer
  第13回分子科学討論会
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] Molecular dynamics study on correlation of membrane properties between outer and inner leaflets of cell plasma membranes2019
- Author(s)
  Andoh Yoshimichi, Hayakawa Shiho, Okazaki Susumu
- Organizer
  The 5th International Conference on Molecular Simulation
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] Recent developments of molecular dynamics calculation software MODYLAS2018
- Author(s)
  Andoh Yoshimichi
- Organizer
  5th ADAC workshop
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 大規模分子動力学計算高速化のための新規MPI通信方法の開発2018
- Author(s)
  安藤嘉倫, 坂下達哉, 吉井範行, 岡崎進
- Organizer
  第32回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 脂質二重層膜中のコレステロール二分子間側方相互作用にリン脂質および水が果たす役割の解明2018
- Author(s)
  松岡漢斗, 安藤嘉倫, 岡崎進
- Organizer
  第32回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 脂質組成に非対称性をもつモデル脂質二重膜の分子動力学計算2018
- Author(s)
  安藤嘉倫, 早川志保, 岡崎進
- Organizer
  第12回分子科学討論会2018
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 脂質組成の非対称性を考慮したモデル脂質二重膜の分子動力学計算2017
- Author(s)
  早川志保, 安藤嘉倫, 岡崎進
- Organizer
  第11回分子科学討論会
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] Molecular dynamics study of differences in membrane properties between outer and inner leaflets of cell plasma membranes2017
- Author(s)
  Andoh Yoshimichi, Hayakawa Shiho, Okazaki Suzumu
- Organizer
  Joint EMLG/JMLG Meeting 2017
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 脂質組成の非対称性を考慮したモデル脂質二重膜の分子動力学計算2017
- Author(s)
  安藤嘉倫, 早川志保, 岡崎進
- Organizer
  第40回溶液化学シンポジウム
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 脂質二重膜中のコレステロール2分子間側方相互作用への溶媒効果の解明2017
- Author(s)
  松岡漢斗,安藤嘉倫,岡崎進
- Organizer
  第31回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 細胞膜の外単層膜と内単層膜間での膜物性の違いに関する研究2017
- Author(s)
  早川志保, 安藤嘉倫, 岡崎進
- Organizer
  第11回分子科学討論会
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 細胞膜の外単層膜と内単層膜間での膜物性の違いに関する研究2017
- Author(s)
  早川志保, 安藤嘉倫, 岡崎進
- Organizer
  第31回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] マルチタイムステップ数値積分法(RESPA) に基づく分子動力学計算での圧力値算出における問題2016
- Author(s)
  安藤嘉倫, 吉井範行, 山田篤志, 岡崎進
- Organizer
  第30 回分子シミュレーション討論会
- Place of Presentation
  大阪
- Year and Date
  2016-11-30
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 親水性および疎水性の異なる直鎖界面活性剤分子添加によるDMPC 脂質二重層膜の物性変化2016
- Author(s)
  鬼頭咲帆, 安藤嘉倫, 岡崎進
- Organizer
  第39回溶液化学シンポジウム
- Place of Presentation
  筑波
- Year and Date
  2016-11-09
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] リン脂質二重層膜中でのコレステロール間側方相互作用のリン脂質種依存性2016
- Author(s)
  松岡漢斗, 安藤嘉倫, 岡崎進
- Organizer
  第39回溶液化学シンポジウム
- Place of Presentation
  筑波
- Year and Date
  2016-11-09
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] 肝臓細胞膜を模した脂質二重層膜の全原子分子動力学計算2016
- Author(s)
  安藤嘉倫, 青木則之, 岡崎進
- Organizer
  第10回分子科学討論会
- Place of Presentation
  神戸
- Year and Date
  2016-09-13
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] リン脂質二重層膜中でのコレステロール間側方相互作用のリン脂質種依存性2016
- Author(s)
  松岡漢斗, 安藤嘉倫, 岡崎進
- Organizer
  第30 回分子シミュレーション討論会
- Place of Presentation
  大阪
- Year and Date
  2016-11-30
- Data Source
  KAKENHI-PROJECT-16K21094
[Presentation] An attempt to estimate correct atomic pressure in the multiple time-step integration algorithm2016
- Author(s)
  Y. Andoh, N. Yoshii, A. Yamada, S. Okazaki
- Organizer
  The 4th International Conference on Molecular Simulation
- Place of Presentation
  Shanghai
- Year and Date
  2016-10-23
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K21094

1. YOSHII Noriyuki

# of Collaborated Projects: 0 results

# of Collaborated Products: 5 results

andoh yoshimichi 安藤 嘉倫

安藤 嘉倫 アンドウ ヨシミチ

Andoh Yoshimichi 安藤 嘉倫

Research Projects

Research Products

Co-Researchers

Basic research for an extension of space-scale in classical molecular dynamics calculations by introducing machine-learning potentialPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Molecular dynamics study of membrane properties of lipid bilayers with asymmetric lipid compositionPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] The Art of High Performance Computing for Computational Science: Advanced techniques and examples for materials science, vol. 2, 117-157. Acceleration of Classical Molecular Dynamics Simulations2019

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Book] 月刊細胞 50巻 (3), 43-44. 分子シミュレーションによる非対称な脂質組成をもった脂質二重層膜物性の解明2018

Author(s)

Total Pages

Publisher

Data Source

[Book] 計算科学のためのHPC技術22017

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Journal Article] 分子動力学計算の大規模並列化のための技術 42024

Author(s)

Journal Title

DOI

ISSN

Year and Date

Language

Data Source

[Journal Article] An exa-scale high-performance molecular dynamics simulation program: MODYLAS2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] 分子動力学計算の大規模並列化のための技術 12023

Author(s)

Journal Title

Data Source

[Journal Article] 「分子動力学計算の大規模並列化のための技術 2」2023

Author(s)

Journal Title

DOI

ISSN

Year and Date

Language

Data Source

[Journal Article] 分子動力学計算の大規模並列化のための技術 32023

Author(s)

Journal Title

DOI

ISSN

Year and Date

Language

Data Source

[Journal Article] Molecular dynamics study of lipid bilayers modeling outer and inner leaflets of plasma membranes of mouse hepatocytes. I: Differences in physicochemical properties between the two leaflets2020

Author(s)

Journal Title

Data Source

[Journal Article] Extension of the fast multipole method for the rectangular cells with an anisotropic partition tree structure2020

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] Fast multipole method for three dimensional systems with periodic boundary condition in two directions2020

Author(s)

andoh yoshimichi 安藤嘉倫

安藤嘉倫アンドウヨシミチ

Andoh Yoshimichi 安藤嘉倫