Walinda Erik ＷａｌｉｎｄａＥｒｉｋ

… Alternative Names

WALINDA ERIK Walinda Erik

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Researcher Number	80782391
Other IDs
Affiliation (Current)	2023: 京都大学, 医学研究科, 助教
Affiliation (based on the past Project Information) *help	2018 – 2022: 京都大学, 医学研究科, 助教
Review Section/Research Field	Principal Investigator Basic Section 43040:Biophysics-related Except Principal Investigator Medium-sized Section 13:Condensed matter physics and related fields / Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
Keywords	Principal Investigator Ubiquitin / ubiquitin / polyubiquitin / binding domains / Protein binding / ubiquitin binding / UBA domain / K48-linked chains / K63-linked chains / M1-linked chains … More / solution NMR / molecular dynamics / millisecond dynamics / protein dynamics / protein binding / nanosecond dynamics / Molecular recognition / Protein dynamics / ユビキチン / NMR / 蛋白質 / 生物物理 / Molecular competition / Linear polyubiquitin / NF-kappa B / NF-kB signaling / Binding proteins / Chemical physics / Competitive binding … More Except Principal Investigator Rheo-NMR / 速度イメージング / off-center Couette cell / 乱流 / タンパク質凝集 / 線維化 / 電場 / NMR / タンパク質 / 凝集 / 電気泳動 Less

Regulation of NF-kB signaling through competitive interactions against linear polyubiquitinPrincipal Investigator
- Principal Investigator
  
  Walinda Erik
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43040:Biophysics-related
- Research Institution
  Kyoto University
Development of analytical platform for proteins in electric field and its application
- Principal Investigator
  
  菅瀬謙治
- Project Period (FY)
  2022 – 2025
- Research Category
  
  Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))
- Review Section
  
  Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
- Research Institution
  Kyoto University
Competitive linear ubiquitin binding in NFkB-signalingPrincipal Investigator
- Principal Investigator
  
  Walinda Erik
- Project Period (FY)
  2020 – 2021
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 43040:Biophysics-related
- Research Institution
  Kyoto University
Dynamic Character of the Ubiquitin SystemPrincipal Investigator
- Principal Investigator
  
  WALINDA ERIK
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 43040:Biophysics-related
- Research Institution
  Kyoto University
Velocity imaging of turbulence flow using Rheo-NMR
- Principal Investigator
  
  Sugase Kenji
- Project Period (FY)
  2018 – 2021
- Research Category
  
  Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))
- Review Section
  
  Medium-sized Section 13:Condensed matter physics and related fields
- Research Institution
  Kyoto University

All 2021 2020 2019 2018

All Journal Article Presentation

[Journal Article] Structural Dynamic Heterogeneity of Polyubiquitin Subunits Affects Phosphorylation Susceptibility2021
- Author(s)
  Morimoto Daichi、Walinda Erik、Takashima Shingo、Nishizawa Mayu、Iwai Kazuhiro、Shirakawa Masahiro、Sugase Kenji
- Journal Title
  
  Biochemistry
  
  Volume: 60 Pages: 573-583
- DOI
  10.1021/acs.biochem.0c00619
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K15757, KAKENHI-PLANNED-18H05499, KAKENHI-PROJECT-17H06174, KAKENHI-PROJECT-19J13259, KAKENHI-PROJECT-18K19297, KAKENHI-PROJECT-18K14665
[Journal Article] Transient Diffusive Interactions with a Protein Crowder Affect Aggregation Processes of Superoxide Dismutase 1 β‐Barrel2021
- Author(s)
  Iwakawa Naoto、Morimoto Daichi、Walinda Erik、Leeb Sarah、Shirakawa Masahiro、Danielsson Jens、Sugase Kenji
- Journal Title
  
  J. Phys. Chem. B
  
  Volume: 125 Pages: 2521-2532
- DOI
  10.1021/acs.jpcb.0c11162
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K15757, KAKENHI-PROJECT-18KK0075, KAKENHI-PROJECT-18J22192, KAKENHI-PROJECT-18K19297, KAKENHI-PROJECT-18K14665
[Journal Article] Molecular recognition and deubiquitination of cyclic K48-linked ubiquitin chains by OTUB12021
- Author(s)
  Sorada Tomoki、Morimoto Daichi、Walinda Erik、Sugase Kenji
- Journal Title
  
  Biochemical and Biophysical Research Communications
  
  Volume: 562 Pages: 94-99
- DOI
  10.1016/j.bbrc.2021.05.031
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18KK0075
[Journal Article] Expression, solubility monitoring, and purification of the co-folded LUBAC LTM domain by structure-guided tandem folding in autoinducing cultures2021
- Author(s)
  Walinda Erik、Morimoto Daichi、Sorada Tomoki、Iwai Kazuhiro、Sugase Kenji
- Journal Title
  
  Protein Expression and Purification
  
  Volume: 187 Pages: 105953-105953
- DOI
  10.1016/j.pep.2021.105953
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18KK0075, KAKENHI-PLANNED-18H05499, KAKENHI-PROJECT-17H06174, KAKENHI-PROJECT-20K15757
[Journal Article] Backbone resonance assignments of the A2 domain of mouse von Willebrand factor2021
- Author(s)
  Morimoto Daichi、Osugi Masanori、Mahana Yutaka、Walinda Erik、Shirakawa Masahiro、Sugase Kenji
- Journal Title
  
  Biomolecular NMR Assignments
  
  Volume: 15 Pages: 427-431
- DOI
  10.1007/s12104-021-10041-8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18KK0075, KAKENHI-PROJECT-20H00453, KAKENHI-PROJECT-20K15757
[Journal Article] Multiple-State Monitoring of SOD1 Amyloid Formation at Single-Residue Resolution by Rheo-NMR Spectroscopy2021
- Author(s)
  Iwakawa Naoto、Morimoto Daichi、Walinda Erik、Shirakawa Masahiro、Sugase Kenji
- Journal Title
  
  Journal of the American Chemical Society
  
  Volume: 143 Pages: 10604-10613
- DOI
  10.1021/jacs.1c02974
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18KK0075, KAKENHI-PROJECT-20H00453, KAKENHI-PROJECT-20K15757
[Journal Article] Effects of Weak Nonspecific Interactions with ATP on Proteins2021
- Author(s)
  Nishizawa Mayu、Walinda Erik、Morimoto Daichi、Kohn Benjamin、Scheler Ulrich、Shirakawa Masahiro、Sugase Kenji
- Journal Title
  
  Journal of the American Chemical Society
  
  Volume: 143 Pages: 11982-11993
- DOI
  10.1021/jacs.0c13118
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KK0075, KAKENHI-PROJECT-20H00453, KAKENHI-PROJECT-20K15757
[Journal Article] Structural dynamics of double-stranded DNA with epigenome modification2020
- Author(s)
  Furukawa Ayako、Walinda Erik、Arita Kyohei、Sugase Kenji
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 49 Pages: 1152-1162
- DOI
  10.1093/nar/gkaa1210
- NAID
  120006943328
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-19H05739, KAKENHI-PLANNED-19H05741, KAKENHI-PROJECT-18H02392, KAKENHI-PROJECT-18K14665
[Journal Article] Visualizing protein motion in Couette flow by all-atom molecular dynamics.2020
- Author(s)
  Walinda Erik、Morimoto Daichi、Shirakawa Masahiro、Scheler Ulrich、Sugase Kenji
- Journal Title
  
  Biochim. Biophys. Acta Gen. Subj.
  
  Volume: 1864 Pages: 129383-129383
- DOI
  10.1016/j.bbagen.2019.06.006
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K19297, KAKENHI-PROJECT-18KK0075, KAKENHI-PUBLICLY-18H04551, KAKENHI-WRAPUP-19H05452, KAKENHI-PROJECT-17K19196, KAKENHI-PROJECT-16K18503, KAKENHI-PROJECT-18K14665
[Journal Article] Pinpoint analysis of a protein in slow exchange using F1F2-selective ZZ-exchange spectroscopy: assignment and kinetic analysis2020
- Author(s)
  Mayu Nishizawa, Erik Walinda, Daichi Morimoto, Kenji Sugase
- Journal Title
  
  J. Biomol. NMR
  
  Volume: 0 Pages: 0-0
- DOI
  10.1007/s10858-020-00309-x
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K14665, KAKENHI-PUBLICLY-18H04551, KAKENHI-PROJECT-19J13259
[Journal Article] Tracking the 3D Rotational Dynamics in Nanoscopic Biological Systems2020
- Author(s)
  Ryuji Igarashi, Takuma Sugi, Shingo Sotoma, Takuya Genjo, Yuta Kumiya, Erik Walinda, Hiroshi Ueno, Kazuhiro Ikeda, Hitoshi Sumiya, Hidehito Tochio, Yohsuke Yoshinari, Yoshie Harada, Masahiro Shirakawa
- Journal Title
  
  Journal of the American Chemical Society
  
  Volume: 142 Pages: 7542-7554
- DOI
  10.1021/jacs.0c01191
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H01838, KAKENHI-PROJECT-20H02587, KAKENHI-PROJECT-18K14665, KAKENHI-PUBLICLY-19H05380
[Journal Article] Quantitative monitoring of ubiquitination/deubiquitination reaction cycles by 18O-incorporation2020
- Author(s)
  Tanaka Yuka、Morimoto Daichi、Walinda Erik、Sugase Kenji、Shirakawa Masahiro
- Journal Title
  
  Biochemical and Biophysical Research Communications
  
  Volume: 529 Pages: 418-424
- DOI
  10.1016/j.bbrc.2020.06.008
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K15757, KAKENHI-PROJECT-18K19297, KAKENHI-PROJECT-18K14665
[Journal Article] Backbone and side-chain resonance assignments of the methyl-CpG-binding domain of MBD6 from Arabidopsis thaliana.2019
- Author(s)
  Iwakawa Naoto、Mahana Yutaka、Ono Arina、Ohki Izuru、Walinda Erik、Morimoto Daichi、Sugase Kenji、Shirakawa Masahiro
- Journal Title
  
  Biomolecular NMR Assignments
  
  Volume: 13 Pages: 59-62
- DOI
  10.1007/s12104-018-9851-2
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06083, KAKENHI-PROJECT-16K18503, KAKENHI-PROJECT-18K14665, KAKENHI-PLANNED-26119004
[Journal Article] NMR resonance assignments of the NZF domain of mouse HOIL-1L free and bound to linear di-ubiquitin2019
- Author(s)
  Ishii Naoki、Walinda Erik、Iwakawa Naoto、Morimoto Daichi、Iwai Kazuhiro、Sugase Kenji、Shirakawa Masahiro
- Journal Title
  
  Biomolecular NMR Assignments
  
  Volume: 13 Pages: 149-153
- DOI
  10.1007/s12104-018-09868-5
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K18503, KAKENHI-PROJECT-18K14665
[Journal Article] Resolving biomolecular motion and interactions by R2 and R1ρ relaxation dispersion NMR.2018
- Author(s)
  Walinda Erik、Morimoto Daichi、Sugase Kenji
- Journal Title
  
  Methods
  
  Volume: 148 Pages: 28-38
- DOI
  10.1016/j.ymeth.2018.04.026
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K18503, KAKENHI-PROJECT-18K14665, KAKENHI-PUBLICLY-18H04551, KAKENHI-PROJECT-15H04342
[Presentation] Molecular fluid dynamics description of Rheo-NMR2019
- Author(s)
  Walinda Erik
- Organizer
  EUROMAR 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KK0075

1. Sugase Kenji (00300822)

# of Collaborated Projects: 2 results

# of Collaborated Products: 9 results
2. 森本大智 (40746616)

# of Collaborated Projects: 2 results

# of Collaborated Products: 12 results
3. 有田恭平

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
4. 岩井一宏

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
5. 白川昌宏

# of Collaborated Projects: 0 results

# of Collaborated Products: 8 results
6. 大木出

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
7. 原田慶恵

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
8. 上野博史

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Walinda Erik Ｗａｌｉｎｄａ Ｅｒｉｋ

WALINDA ERIK Walinda Erik

Research Projects

Research Products

Co-Researchers

Regulation of NF-kB signaling through competitive interactions against linear polyubiquitinPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of analytical platform for proteins in electric field and its application

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Competitive linear ubiquitin binding in NFkB-signalingPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Dynamic Character of the Ubiquitin SystemPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Velocity imaging of turbulence flow using Rheo-NMR

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Structural Dynamic Heterogeneity of Polyubiquitin Subunits Affects Phosphorylation Susceptibility2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Transient Diffusive Interactions with a Protein Crowder Affect Aggregation Processes of Superoxide Dismutase 1 β‐Barrel2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Molecular recognition and deubiquitination of cyclic K48-linked ubiquitin chains by OTUB12021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Expression, solubility monitoring, and purification of the co-folded LUBAC LTM domain by structure-guided tandem folding in autoinducing cultures2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Backbone resonance assignments of the A2 domain of mouse von Willebrand factor2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Multiple-State Monitoring of SOD1 Amyloid Formation at Single-Residue Resolution by Rheo-NMR Spectroscopy2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Effects of Weak Nonspecific Interactions with ATP on Proteins2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Structural dynamics of double-stranded DNA with epigenome modification2020

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] Visualizing protein motion in Couette flow by all-atom molecular dynamics.2020

Author(s)

Journal Title

DOI

Walinda Erik ＷａｌｉｎｄａＥｒｉｋ