Kurata Hiroyuki 倉田博之

… Alternative Names

KURATA Hiroyuki 倉田博之

倉田博之クラタヒロユキ

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Researcher Number	90251371
Other IDs
External Links
Affiliation (Current)	2025: 九州工業大学, 大学院情報工学研究院, 教授
Affiliation (based on the past Project Information) *help	2014 – 2024: 九州工業大学, 大学院情報工学研究院, 教授 2012 – 2013: 九州工業大学, 情報工学研究院, 教授 2008 – 2011: Kyushu Institute of Technology, 大学院・情報工学研究院, 教授 2007: Kyushu Institute of Technology, 情報工学部, 教授 2000 – 2006: 九州工業大学, 情報工学部, 助教授 … More 1998: 東京大学, 大学院・工学学科, 助手 1997 – 1998: 東京大学, 大学院・工学系研究科, 助手 1996: 東京大学, 工学系研究科・化学生命工学専攻, 助手 Less
Review Section/Research Field	Principal Investigator Biological Sciences / Bioinformatics/Life informatics / 生物・生体工学 / Basic Section 62010:Life, health and medical informatics-related / Life / Health / Medical informatics / Complex systems / Basic Section 62010:Life, health and medical informatics-related / Human informatics and related fields Except Principal Investigator 生物・生体工学
Keywords	Principal Investigator シミュレーション / システム生物学 / 生体生命情報学 / ネットワーク / ロバストネス / バイオインフォマティクス / コンピュータシミュレーション / インスリン / 動力学 / 合成生物学 … More / 大腸菌 / 予測 / 臓器 / ヒト代謝 / 創薬 / ダイナミックモデル / 糖尿病 / 全身代謝 / 肝臓 / 薬物動態学 / 数理モデリング / 代謝ネットワーク / 数学モデル / ダイナミクス / 代謝 / バイオインフォマティク / 微生物 / ゲノム / シミュレーション工学 / システム / リボザイム / 熱ショック応答 / 植物細胞 / 光 / 脂肪症 / エピジェネティクス / エピジェネティック / 配列解析 / ペプチド / タンパク質 / 機械学習 / メカニズム / コンピュータ / 神経ネットワーク / 統計学 / 臨床 / せき損 / 重回帰解析 / 臨床データ / バイオ統計 / 運動機能回復 / 脊髄損傷 / 人工知能 / データサインエス / 臨床統計 / 数理モデル / ヒト生理学 / システム解析 / 全細胞シミュレーション / Image analysis / Bioinformatics / Systems biology / Dynamic simulation / Stochastic process / Diffusion equation / ファイブブラスト / 細胞運動 / 共焦点顕微鏡 / 統計 / ファイブロブラスト / 画像処理 / 画像解析 / 時空間シミュレーション / 確率過程 / 拡散方程式 / 生体分子ネットワーク / Gillespie / Fokker-Planck / 相互抑制モデル / 相互活性化モデル / 確率モデル / 遺伝子 / 物質生産 / 生物プロセス / 情報科学 / 流束 / 制御 / 遺伝子発現 / 代謝システム / 複雑性 / 設計原理 / 生物回路 / 生体生命システム情報学 / ロバスシネス / システムバイオロジ / アンモニア同化 / CADLIVE / 酵母 / 生命分子ネットワーク / RNA工学 / 遺伝子機能解析 / 形質転換 / BY2 / 生命 / 情報 / 生産 / アントシアニン / 遺伝子組換 / バイオリアクター / 植物培養 / 遺伝子組換え / 二次代謝物 / 制御因子 / RbcS / gus / 植物培養細胞 / フィトクロム … More Except Principal Investigator Metastasis / Alzheimer Disease / apoptosis / Gene Discovery / Ribozyme / 遺伝子破壊 / RNA工学 / 慢性骨髄性白血病 / ハンマーヘッドリボザイム / ジーン・ディスカバリー / 遺伝子治療 / RNAヘリカーゼ / アポトーシス / poly A / RNAヘリケース / がん転移 / アルツハイマー病 / アポトシス / ジーンディスカバリー / リボザイム / 植物 / 生物素子 / 光 / RbcS3A プロモーター / Ca MV35S プロモーター / gus 遺伝子 / レポーター遺伝子 / タバコ培養細胞 / フィトクロム / 二次代謝物生産 / 植物細胞 Less

オミックスを統合するヒト全身代謝マルチスケール動力学モデルの開発Principal Investigator
- Principal Investigator
  
  倉田博之
- Project Period (FY)
  2022 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Kyushu Institute of Technology
Development of a large-scale kinetic model of human organ systemsPrincipal Investigator
- Principal Investigator
  
  Kurata Hiroyuki
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Kyushu Institute of Technology
Structure-based Computer-Aided Drug Design with a Deep Neural Network ApproachPrincipal Investigator
- Principal Investigator
  
  倉田博之
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for JSPS Fellows
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Kyushu Institute of Technology
Development of neural network model for prediction of recovery from spinal cordPrincipal Investigator
- Principal Investigator
  
  Kurata Hiroyuki
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Research Field
  
  Human informatics and related fields
- Research Institution
  Kyushu Institute of Technology
dFBA model of genome-scale human metabolism and its application to multi-drug combination therapyPrincipal Investigator
- Principal Investigator
  
  Kurata Hiroyuki
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Kyushu Institute of Technology
ノイズが引き起こす確率的挙動を考慮した生体分子ネットワークの実用的設計Principal Investigator
- Principal Investigator
  
  倉田博之
- Project Period (FY)
  2014 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  Kyushu Institute of Technology
Virtual Metabolism: Development of a standard dynamic model of metabolic systemsPrincipal Investigator
- Principal Investigator
  
  Kurata Hiroyuki
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Kyushu Institute of Technology
メタボロームを代謝ネットワークへ統合する数理モデルの開発Principal Investigator
- Principal Investigator
  
  倉田博之
- Project Period (FY)
  2011 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  Kyushu Institute of Technology
Biological design principle-based synthetic biologyPrincipal Investigator
- Principal Investigator
  
  KURATA Hiroyuki
- Project Period (FY)
  2010 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Kyushu Institute of Technology
分子ネットワークのコンピュータ支援設計法の開発とグルコース同化システムへの応用Principal Investigator
- Principal Investigator
  
  倉田博之
- Project Period (FY)
  2008 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu Institute of Technology
Dynamic simulation and system analysis for gene regulatory networksPrincipal Investigator
- Principal Investigator
  
  KURATA Hiroyuki
- Project Period (FY)
  2006 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Kyushu Institute of Technology
ネットワークマップに基づく大規模生命分子ネットワークのロバスト解析Principal Investigator
- Principal Investigator
  
  倉田博之
- Project Period (FY)
  2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu Institute of Technology
Image analysis of fibroblast movement regulation and dynamic simulationPrincipal Investigator
- Principal Investigator
  
  KURATA Hiroyuki
- Project Period (FY)
  2003 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Kyushu Institute of Technology
2相分離計算法を用いた生命分子ネットワーク解析により生命の設計原理の解明Principal Investigator
- Principal Investigator
  
  倉田博之
- Project Period (FY)
  2001
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu Institute of Technology
植物遺伝子機能解析のためのハイブリッド型リボザイムの開発Principal Investigator
- Principal Investigator
  
  倉田博之
- Project Period (FY)
  2001 – 2002
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  生物・生体工学
- Research Institution
  Kyushu Institute of Technology
数学モデリングとリボザイムの共同による生命システム設計原理の解明Principal Investigator
- Principal Investigator
  
  倉田博之
- Project Period (FY)
  2000
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu Institute of Technology
Development of functional analysis of genes in cells using functional nucleic acids
- Principal Investigator
  
  TAIRA Kazunari
- Project Period (FY)
  2000 – 2003
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  生物・生体工学
- Research Institution
  University of Tokyo
制御遺伝子導入による有用二次代謝物生産に関わる構造遺伝子群の発現誘導システムPrincipal Investigator
- Principal Investigator
  
  倉田博之
- Project Period (FY)
  1997 – 1998
- Research Category
  
  Grant-in-Aid for Encouragement of Young Scientists (A)
- Research Field
  
  生物・生体工学
- Research Institution
  The University of Tokyo
光レセプター遺伝子の機能解析と光素子の展開
- Principal Investigator
  
  古崎新太郎
- Project Period (FY)
  1997 – 1998
- Research Category
  
  Grant-in-Aid for Exploratory Research
- Research Field
  
  生物・生体工学
- Research Institution
  Kyushu University
  The University of Tokyo
フィトクロム遺伝子を導入した組換え植物培養細胞を用いた光バイオリアクターPrincipal Investigator
- Principal Investigator
  
  倉田博之
- Project Period (FY)
  1996
- Research Category
  
  Grant-in-Aid for Encouragement of Young Scientists (A)
- Research Field
  
  生物・生体工学
- Research Institution
  The University of Tokyo

[Book] 抗体医薬における細胞構築・培養・ダウンストリームのすべて2015
- Author(s)
  倉田博之
- Total Pages
  273
- Publisher
  シーエムシー出版
- Data Source
  KAKENHI-PROJECT-25280107
[Book] システム工学的アプローチを用いた細胞モデリング，In 抗体医薬における細胞構築・培養・ダウンストリームのすべて（ファインケミカルシリーズ）2015
- Author(s)
  倉田博之
- Total Pages
  200
- Publisher
  シーエムシー出版
- Data Source
  KAKENHI-PROJECT-25280107
[Book] Biomedical Engineering and Cognitive Neuroscience for Healthcare: Interdisciplinary Applications2012
- Author(s)
  Hiroyuki Kurata
- Total Pages
  200
- Publisher
  IGI Global
- Data Source
  KAKENHI-PUBLICLY-23134506
[Book] Biomedical Engineering and Cognitive Neuroscience for Healthcare: Interdisciplinary Applications2012
- Author(s)
  Hiroyuki Kurata
- Total Pages
  200
- Publisher
  IGI Global
- Data Source
  KAKENHI-PROJECT-22300101
[Book] Modularity of biochemical networks In : Biomedical Engineering and Cognitive Neuroscience for Healthcare : Interdisciplinary Applications2012
- Author(s)
  Hiroyuki Kurata
- Total Pages
  20
- Publisher
  IGI Global
- Data Source
  KAKENHI-PROJECT-22300101
[Book] In: Biomedical Engineering and Cognitive Neuroscience for Healthcare: Interdisciplinary Applications2012
- Author(s)
  Hiroyuki Kurata, Modularity of biochemical networks
- Publisher
  IGI Global, Hershey, USA
- Data Source
  KAKENHI-PROJECT-22300101
[Book] システム工学的アプローチを用いた細胞設計,In抗体医薬のための細胞構築と培養技術(ファインケミカルシリーズ)2010
- Author(s)
  倉田博之, 監修:大政健史
- Publisher
  シーエムシー出版
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] Stack-DHUpred: Advancing the accuracy of dihydrouridine modification sites detection via stacking approach2024
- Author(s)
  Harun-Or-Roshid Md.、Maeda Kazuhiro、Phan Le Thi、Manavalan Balachandran、Kurata Hiroyuki
- Journal Title
  
  Computers in Biology and Medicine
  
  Volume: 169 Pages: 107848-107848
- DOI
  10.1016/j.compbiomed.2023.107848
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K24943
[Journal Article] CNN6mA: Interpretable neural network model based on position-specific CNN and cross-interactive network for 6mA site prediction2023
- Author(s)
  Tsukiyama Sho、Hasan Md Mehedi、Kurata Hiroyuki
- Journal Title
  
  Computational and Structural Biotechnology Journal
  
  Volume: 21 Pages: 644-654
- DOI
  10.1016/j.csbj.2022.12.043
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K24943
[Journal Article] Automatic Generation of SBML Kinetic Models from Natural Language Texts Using GPT2023
- Author(s)
  Maeda Kazuhiro、Kurata Hiroyuki
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 24 Issue: 8 Pages: 7296-7296
- DOI
  10.3390/ijms24087296
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K12247, KAKENHI-PROJECT-23K24943
[Journal Article] Cross-attention PHV: Prediction of human and virus protein-protein interactions using cross-attention-based neural networks2022
- Author(s)
  Sho Tsukiyama and Hiroyuki Kurata
- Journal Title
  
  Computational and Structural Biotechnology Journal
  
  Volume: 20 Pages: 5564-5573
- DOI
  10.1016/j.csbj.2022.10.012
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22KJ2495, KAKENHI-PROJECT-23K24943
[Journal Article] BERT6mA: prediction of DNA N6-methyladenine site using deep learning-based approaches2022
- Author(s)
  Tsukiyama Sho、Hasan Md Mehedi、Deng Hong-Wen、Kurata Hiroyuki
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 23 Issue: 2 Pages: 1-15
- DOI
  10.1093/bib/bbac053
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K24943
[Journal Article] MLAGO: machine learning-aided global optimization for Michaelis constant estimation of kinetic modeling2022
- Author(s)
  Maeda Kazuhiro、Hatae Aoi、Sakai Yukie、Boogerd Fred C.、Kurata Hiroyuki
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 23 Issue: 1 Pages: 1-1
- DOI
  10.1186/s12859-022-05009-x
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K12247, KAKENHI-PROJECT-23K24943
[Journal Article] iACVP: markedly enhanced identification of anti-coronavirus peptides using a dataset-specific word2vec model2022
- Author(s)
  Kurata Hiroyuki、Tsukiyama Sho、Manavalan Balachandran
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 23 Issue: 4 Pages: 1-12
- DOI
  10.1093/bib/bbac265
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K24943
[Journal Article] ICAN: interpretable cross-attention network for identifying drug and target protein interactions2022
- Author(s)
  Hiroyuki Kurata and Sho Tsukiyama.
- Journal Title
  
  PLoS ONE
  
  Volume: 17(10) Issue: 10 Pages: 0276609-0276609
- DOI
  10.1371/journal.pone.0276609
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22KJ2495, KAKENHI-PROJECT-23K24943
[Journal Article] Critical evaluation of web-based DNA N6-methyladenine site prediction tools2021
- Author(s)
  Hasan Md Mehedi、Shoombuatong Watshara、Kurata Hiroyuki、Manavalan Balachandran
- Journal Title
  
  Briefings in Functional Genomics
  
  Volume: 20 Issue: 4 Pages: 258-272
- DOI
  10.1093/bfgp/elaa028
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04208
[Journal Article] Virtual metabolic human dynamic model for pathological analysis and therapy design for diabetes. iScience2021
- Author(s)
  H. Kurata
- Journal Title
  
  iScience
  
  Volume: 24 Issue: 2 Pages: 102101-102101
- DOI
  10.1016/j.isci.2021.102101
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H04208
[Journal Article] NeuroPred-FRL: An Interpretable Prediction Model for Identifying Neuropeptide using Feature Representation Learning2021
- Author(s)
  Md Mehedi Hasan, Md Ashad Alam, Watshara Shoombuatong, Balachandran Manavalan, Hiroyuki Kurata
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: NA Issue: 6
- DOI
  10.1093/bib/bbab167
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19F19377, KAKENHI-PROJECT-19H04208
[Journal Article] Computer-aided rational design of efficient NADPH production system by Escherichia coli pgi mutant using a mixture of glucose and xylose2020
- Author(s)
  Yu Matsuoka, Hiroyuki Kurata.
- Journal Title
  
  Front. Bioeng. Biotech.
  
  Volume: 8 Pages: 277-277
- DOI
  10.3389/fbioe.2020.00277
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H04208
[Journal Article] A prediction model of functional outcome at 6 months using clinical findings of a person with traumatic spinal cord injury at 1 month after injury2020
- Author(s)
  Yuto Ariji, Tesuo Hayashi, Ryuichiro Koga, Satoshi Murai, Fumihiro Towatari, Hiroaki Sakai, Hiroyuki Kurata, Takeshi Maeda
- Journal Title
  
  Spinal Cord
  
  Volume: 58 Issue: 11 Pages: 1158-1165
- DOI
  10.1038/s41393-020-0488-5
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K20009
[Journal Article] ヒト全身代謝システムの数理モデル2020
- Author(s)
  倉田博之
- Journal Title
  
  細胞
  
  Volume: 52 Pages: 376-379
- Data Source
  KAKENHI-PROJECT-19H04208
[Journal Article] Prediction of S-nitrosylation Sites by Integrating Support Vector Machine and Random Forest.2019
- Author(s)
  Md. Mehedi Hasan, Balachandran Manavalan, Mst. Shamima Khatuna, Hiroyuki Kurata
- Journal Title
  
  Molecular Omics
  
  Volume: 15 Issue: 6 Pages: 451-451
- DOI
  10.1039/c9mo00098d
- NAID
  120007006245
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19F19377
[Journal Article] Computational identification of microbial phosphorylation sites by the enhanced characteristics of sequence information2019
- Author(s)
  Md. Mehedi Hasan, Md. Mamunur Rashid, Mst. Shamima Khatun, Hiroyuki Kurata
- Journal Title
  
  Sci. Rep
  
  Volume: 9 Issue: 1 Pages: 8258-8258
- DOI
  10.1038/s41598-019-44548-x
- NAID
  120006715307
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19F19377
[Journal Article] PreAIP: Computational Prediction of Anti-inflammatory Peptides by Integrating Multiple Complementary Features2019
- Author(s)
  Khatun Mst. Shamima、Hasan Md. Mehedi、Kurata Hiroyuki
- Journal Title
  
  Frontiers in Genetics
  
  Volume: 10 Pages: 1-10
- DOI
  10.3389/fgene.2019.00129
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K20009, KAKENHI-PROJECT-16H02898
[Journal Article] Self-replenishment cycles generate a threshold response2019
- Author(s)
  Hiroyuki Kurata
- Journal Title
  
  Scientific Reports
  
  Volume: 9 Issue: 1 Pages: 17139-17139
- DOI
  10.1038/s41598-019-53589-1
- NAID
  120006773074
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H04208
[Journal Article] Ranking network mechanisms by how they fit diverse experiments and deciding on E. coli's ammonium transport and assimilation network2019
- Author(s)
  Maeda Kazuhiro、Westerhoff Hans V.、Kurata Hiroyuki、Boogerd Fred C.
- Journal Title
  
  npj Systems Biology and Applications
  
  Volume: 5 Issue: 1 Pages: 1-1
- DOI
  10.1038/s41540-019-0091-6
- NAID
  120006778226
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K18153, KAKENHI-PROJECT-19H04208
[Journal Article] Large-Scale Assessment of Bioinformatics Tools for Lysine Succinylation Sites2019
- Author(s)
  Hasan Md. Mehedi、Khatun Mst. Shamima、Kurata Hiroyuki
- Journal Title
  
  Cells
  
  Volume: 8 Issue: 2 Pages: 95-95
- DOI
  10.3390/cells8020095
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K20009, KAKENHI-PROJECT-16H02898
[Journal Article] Computational modeling of lysine post-translational modification: an overview2018
- Author(s)
  Md. Mehedi Hasan, Mst. Shamima Khatun, Hiroyuki Kurata
- Journal Title
  
  Current Synthetic and Systems Biology
  
  Volume: 6 Issue: 01 Pages: 1-6
- DOI
  10.4172/2332-0737.1000137
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K20009
[Journal Article] Long negative feedback loop enhances period tunability of biological oscillators2018
- Author(s)
  Maeda Kazuhiro、Kurata Hiroyuki
- Journal Title
  
  Journal of Theoretical Biology
  
  Volume: 440 Pages: 21-31
- DOI
  10.1016/j.jtbi.2017.12.014
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H02898
[Journal Article] Improved kinetic model of Escherichia coli central carbon metabolism in batch and continuous cultures2018
- Author(s)
  Kurata Hiroyuki、Sugimoto Yurie
- Journal Title
  
  J Bioscie Bioeng
  
  Volume: 125 Issue: 2 Pages: 251-257
- DOI
  10.1016/j.jbiosc.2017.09.005
- NAID
  40021471336
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H02898
[Journal Article] iLMS, Computational Identification of Lysine-Malonylation Sites by Combining Multiple Sequence Features2018
- Author(s)
  Hasan Md. Mehedi、Kurata Hiroyuki
- Journal Title
  
  Proceedings of IEEE 18th International Conference on Bioinformatics and Bioengineering
  
  Volume: 1 Pages: 1-10
- DOI
  10.1109/bibe.2018.00077
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H02898
[Journal Article] A Comprehensive Review of In silico Analysis for Protein S-sulfenylation Sites2018
- Author(s)
  Hasan Md Mehedi、Khatun Mst Shamima、Kurata Hiroyuki
- Journal Title
  
  Protein & Peptide Letters
  
  Volume: 25 Issue: 9 Pages: 815-821
- DOI
  10.2174/0929866525666180905110619
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K20009
[Journal Article] libRCGA: a C library for real-coded genetic algorithms for rapid parameter estimation of kinetic models2018
- Author(s)
  Maeda Kazuhiro、Boogerd Fred C.、Kurata Hiroyuki
- Journal Title
  
  IPSJ Transactions on Bioinformatics
  
  Volume: 11 Issue: 0 Pages: 31-40
- DOI
  10.2197/ipsjtbio.11.31
- NAID
  130007483197
- ISSN
  1882-6679
- Language
  English
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K18153, KAKENHI-PROJECT-16H02898
[Journal Article] A novel isolation method for cancer prognostic factors via the p53 pathway by a combination of in vitro and in silico analyses2018
- Author(s)
  Kamijo Y, Kawahara K, Yoshinaga T, Kurata H, Arima K, Furukawa T.
- Journal Title
  
  Oncoscience
  
  Volume: 5 Issue: 3-4 Pages: 88-98
- DOI
  10.18632/oncoscience.411
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K07221, KAKENHI-PROJECT-16H02898, KAKENHI-PROJECT-16H06276
[Journal Article] SIPMA: A Systematic Identification of Protein-Protein Interactions in Zea mays Using Autocorrelation Features in a Machine-Learning Framework2018
- Author(s)
  Khatun Mst. Shamima、Hasan Md. Mehedi、Mollah Md. Nurul Haque、Kurata Hiroyuki
- Journal Title
  
  Proceedings of IEEE 18th International Conference on Bioinformatics and Bioengineering
  
  Volume: 1 Pages: 1-10
- DOI
  10.1109/bibe.2018.00030
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K20009, KAKENHI-PROJECT-16H02898
[Journal Article] Computational identification of protein S-sulfenylation sites by incorporating the multiple sequence features information2017
- Author(s)
  Md. Mehedi Hasan, Guo Dianjing, Hiroyuki Kurata
- Journal Title
  
  Mol Biosys
  
  Volume: 13 Issue: 12 Pages: 2545-2550
- DOI
  10.1039/c7mb00491e
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K20009
[Journal Article] Modeling and simulation of the redox regulation of the metabolism in Escherichia coli at different oxygen concentrations2017
- Author(s)
  Matsuoka Yu、Kurata Hiroyuki
- Journal Title
  
  Biotechnol Biofules
  
  Volume: 10 Issue: 1 Pages: 1-15
- DOI
  10.1186/s13068-017-0867-0
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H02898
[Journal Article] Mathematical comparison of memory functions between mutual activation and repression networks in a stochastic environment2017
- Author(s)
  Hasan A.B.M. Shamim Ul、Kurata Hiroyuki
- Journal Title
  
  J Theor Biol
  
  Volume: 427 Pages: 28-40
- DOI
  10.1016/j.jtbi.2017.05.036
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H02898
[Journal Article] S-system-based Analysis of the Robust Properties Common to Many Biochemical Network Models2016
- Author(s)
  Yu Matsuoka, Nusrat Jahan, Hiroyuki Kurata
- Journal Title
  
  Bioprocess Biosyst Eng
  
  Volume: 39 Issue: 5 Pages: 735-746
- DOI
  10.1007/s00449-016-1554-4
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-25280107, KAKENHI-PROJECT-16H02898
[Journal Article] Web application for Genetic Modification Flux with database to estimate metabolic fluxes of genetic mutants2016
- Author(s)
  Noorlin Mohd Ali, Ryo Tsuboi, Yuta Matsumoto, Daisuke Koishi, Kentaro Inoue, Kazuhiro Maeda, and Hiroyuki Kurata
- Journal Title
  
  Journal of Bioscience and Bioengineering
  
  Volume: 印刷中 Issue: 1 Pages: 111-116
- DOI
  10.1016/j.jbiosc.2015.12.001
- NAID
  40020886002
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26870432, KAKENHI-PROJECT-25280107, KAKENHI-PROJECT-16H02898
[Journal Article] Metabolic analysis of antibody producing CHO cell culture under different stresses conditions2016
- Author(s)
  Md. Bahadur Badsha, Hiroyuki Kurata, Masayoshi Onitsuka, Takushi Oga, Takeshi Omasa
- Journal Title
  
  J. Biosci. Bioeng.
  
  Volume: - Issue: 1 Pages: 117-124
- DOI
  10.1016/j.jbiosc.2015.12.013
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25280107
[Journal Article] Development of an accurate kinetic model for the central carbon metabolism of Escherichia coli.2016
- Author(s)
  Nusrat Jahan, Kazuhiro Maeda, Yu Matsuoka, Yurie Sugimoto, Hiroyuki Kurata.
- Journal Title
  
  Microbial Cell Factories
  
  Volume: 15 Issue: 1 Pages: 112-112
- DOI
  10.1186/s12934-016-0511-x
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-16H02898, KAKENHI-PROJECT-26870432
[Journal Article] Dynamic Modeling of Metabolic and Gene Regulatory Systems toward Developing Virtual Microbes2014
- Author(s)
  Hiroyuki Kurata, Kazuhiro Maeda, Yu Matsuoka
- Journal Title
  
  J. Chem. Eng. Japan / JCEJ
  
  Volume: 47 Issue: 1 Pages: 1-9
- DOI
  10.1252/jcej.13we152
- NAID
  130003361309
- ISSN
  0021-9592, 1881-1299
- Language
  English
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24800050, KAKENHI-PROJECT-25280107
[Journal Article] CADLIVE toolbox for MATLAB: automatic dynamic modeling of biochemical networks with comprehensive system analysis2014
- Author(s)
  Kentaro Inoue, Kazuhiro Maeda, Takaaki Miyabe, Yu Matsuoka, Hiroyuki Kurata
- Journal Title
  
  Bioprocess and Biosystems Engineering
  
  Volume: Epub Issue: 9 Pages: 19251927-19251927
- DOI
  10.1007/s00449-014-1167-8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24800050, KAKENHI-PROJECT-25280107
[Journal Article] Analytical study of robustness of a negative feedback oscillator by multiparameter sensitivity2014
- Author(s)
  Kazuhiro Maeda, Hiroyuki Kurata
- Journal Title
  
  BMC Syst. Biol.
  
  Volume: 8 Issue: S5 Pages: 112-112
- DOI
  10.1186/1752-0509-8-s5-s1
- NAID
  120005698506
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25280107, KAKENHI-PUBLICLY-26119716
[Journal Article] Complementary elementary modes for fast and efficient analysis of metabolic networks2014
- Author(s)
  Md. Bahadur Badsha, Ryo Tsuboi, Hiroyuki Kurata
- Journal Title
  
  Biochem Eng J.
  
  Volume: 90 Pages: 121130-121130
- DOI
  10.1016/j.bej.2014.05.022
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-25280107
[Journal Article] S-systemを用いた代謝反応モデルの感度解析2014
- Author(s)
  松岡結, Nusrat Jahan, 倉田博之
- Journal Title
  
  IPSJ SIG technical reports
  
  Volume: BIO-37(1) Pages: 1-2
- NAID
  110009675848
- Data Source
  KAKENHI-PROJECT-25280107
[Journal Article] Fluxmodule decomposition fbr parameterestimation in a multiple-fbedback loopmodel of biochemical networks2013
- Author(s)
  Kazuhiro Maeda, Keisuke Ybshida,Keisuke Ybshida, Hirovuki Kurata
- Journal Title
  
  Bioprocess Biosyst. Eng
  
  Volume: 36 Pages: 333-344
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] Database for predicting a metabolic flux distribution within a cell2013
- Author(s)
  Noorlin MohdAli , Kentaro Inoue , Hiroyuki Kurata
- Journal Title
  
  IPSJ SIG technical reports
  
  Volume: BIO-35(6) Pages: 1-2
- Data Source
  KAKENHI-PROJECT-25280107
[Journal Article] Effect of cra gene mutation on the metabolism of Escherichia coli for a mixture of multiple carbon sources2013
- Author(s)
  Ruilian Yao, Hiroyuki Kurata, Kazuyuki Shimizu
- Journal Title
  
  Advances in Bioscience and Biotechnology
  
  Volume: 4 Issue: 03 Pages: 477-486
- DOI
  10.4236/abb.2013.43a063
- NAID
  120005698503
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25280107
[Journal Article] Flux module decomposition for parameter estimation in a multiple-feedback loop model of biochemical networks2013
- Author(s)
  Kazuhiro Maeda, Keisuke Yoshida, Keisuke Yoshida, Hiroyuki Kurata
- Journal Title
  
  Bioprocess Biosyst. Eng.
  
  Volume: 36
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] BioFNet: Biological functional network database for analysis and synthesis of biological systems2013
- Author(s)
  Hiroyuki Kurata, Kazuhiro Maeda, Toshikazu Onaka, Takenori Takata
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: Epub Issue: 5 Pages: 699-709
- DOI
  10.1093/bib/bbt048
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24800050, KAKENHI-PROJECT-25280107
[Journal Article] 大腸菌アンモニア同化制御機構のダイナミックモデルの構築2013
- Author(s)
  前田和勲, Fred C. Boogerd, Frank J. Bruggeman, Hans V. Westerhoff, 倉田博之
- Journal Title
  
  IPSJ SIG technical reports
  
  Volume: BIO-35(7) Pages: 1-6
- NAID
  110009605329
- Data Source
  KAKENHI-PROJECT-25280107
[Journal Article] Complementary elementary mode analysis for large-scale metabolic networks,2013
- Author(s)
  Md. BahadurBadsha , Ryo Tsuboi , Hiroyuki Kurata
- Journal Title
  
  IPSJ SIG technical reports
  
  Volume: BIO-35(5) Pages: 1-2
- Data Source
  KAKENHI-PROJECT-25280107
[Journal Article] Application of Approximate PatternMatching in Two Dimensional Spaces toGrid Layout fbr Biochemical NetworkMaps2012
- Author(s)
  Kentaro Inoue, Shinichi Shimozono,Hideaki Ybshida, .Hirovuki Kurata
- Journal Title
  
  PLoS ONE
  
  Volume: 7
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] Biological design principles of complex feedback modules in the E.coli ammonia assimilation system2012
- Author(s)
  Koichi Masaki, Kazuhiro Maeda, Hiroyuki Kurata
- Journal Title
  
  Artificial Life
  
  Volume: 18 Pages: 19-603
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23134506
[Journal Article] Application of Approximate Pattern Matching in Two Dimensional Spaces to Grid Layout for Biochemical Network Maps2012
- Author(s)
  Kentaro Inoue, Shinichi Shimozono, Hideaki Yoshida, Hiroyuki Kurata
- Journal Title
  
  PLoS ONE
  
  Volume: 7
- NAID
  120005698507
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23134506
[Journal Article] CADLIVE Optimizer: Web-based Parameter Estimation for Dynamic Models2012
- Author(s)
  Kentaro Inoue, Kazuhiro Maeda, Yuki Kato, Shinpei Tonami, Shogo Takagi, Hiroyuki Kurata
- Journal Title
  
  Source Code for Biology and Medicine
  
  Volume: 7 Pages: 9-9
- NAID
  120005698504
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] Web-based Parameter Estimation fbrDynamic Models2012
- Author(s)
  Kentaro Inoue, Kazuhiro Maeda, YukiKato, Shinpei Tonami, Shogo Takagi,Hirovuki Kurata, CADLIVE Optimizer
- Journal Title
  
  Source Code fbr Biologyand Medicine
  
  Volume: 7 Pages: 9-9
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] A Symmetric Dual Feedback System Provides a Robust and Entrainable Oscillator.2012
- Author(s)
  Kazuhiro Maeda, Hiroyuki Kurata
- Journal Title
  
  PLoS ONE
  
  Volume: 7
- NAID
  120005698510
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] Application of Approximate Pattern Matching in Two Dimensional Spaces to Grid Layout for Biochemical Network Maps2012
- Author(s)
  Kentaro Inoue, Shinichi Shimozono, Hideaki Yoshida, Hiroyuki Kurata
- Journal Title
  
  PLoS ONE
  
  Volume: 7
- NAID
  120005698507
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] A Symmetric Dual Feedback System Provides a Robust and Entrainable Oscillator2012
- Author(s)
  Kazuhiro Maeda, Hiroyuki Kurata
- Journal Title
  
  PLoS ONE
  
  Volume: 7:
- NAID
  120005698510
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] Biological design principles of complex feedback modules in the E. coli ammonia assimilation system2012
- Author(s)
  Koichi Masaki, Kazuhiro Maeda, Hiroyuki Kurata
- Journal Title
  
  Artificial Life
  
  Volume: 18 Pages: 53-90
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23134506
[Journal Article] Biological design principles of complex feedback modules in the E. coli ammonia assimilation system2012
- Author(s)
  Koichi Masaki, Kazuhiro Maeda, Hiroyuki Kurata
- Journal Title
  
  Artificial Life
  
  Volume: 18 Pages: 53-90
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] Biological design principles of complex feedback Modules in the E.coli ammonia assimilation system2012
- Author(s)
  Koichi Masaki, Kazuhiro Maeda, Hiroyuki Kurata
- Journal Title
  
  Artificial Life
  
  Volume: 18 Pages: 53-90
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] An integrative and practical evolutionary optimization for a complex, dynamic model of biological networks2011
- Author(s)
  Kazuhiro Maeda, Yuya Fukano, Shunsuke Yamamichi, Daichi Nitta, Hiroyuki Kurata
- Journal Title
  
  Bioproc Biosys Eng
  
  Volume: 34 Issue: 4 Pages: 433-446
- DOI
  10.1007/s00449-010-0486-7
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23134506
[Journal Article] CADLIVE Converter for constructing a biochemical network map2011
- Author(s)
  Kentaro Inoue, Sayaka Tomeda, Shinpei Tonami, Yuki Shimokawa, Masayo Ono, Hiroyuki Kurata
- Journal Title
  
  Biochem Eng J
  
  Volume: 54 Pages: 200-206
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] Quasi-multiparametersensitivity measure for robustness analysis of complex biochemical networks2011
- Author(s)
  Kazuhiro Maeda, Hiroyuki Kurata
- Journal Title
  
  J Theor Biol
  
  Volume: 272 Pages: 174-186
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] An integrative and practical evolutionary optimization for a complex, dynamic model of biological networks.2011
- Author(s)
  Kazuhiro Maeda, Yuya Fukano, Shunsuke Yamamichi, Daichi Nitta, Hiroyuki Kurata
- Journal Title
  
  Bioproc Biosys Eng
  
  Volume: 34 Pages: 433-446
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] Quasi-multiparameter sensitivity measure for robustness analysis of complex biochemical networks2011
- Author(s)
  Kazuhiro Maeda, Hiroyuki Kurata
- Journal Title
  
  J Theor Biol
  
  Volume: 272 Pages: 174-186
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] Use of maximum entropy principle with Lagrange multipliers extends the feasibility of elementary mode analysis.2010
- Author(s)
  Quanyu Zhao, Hiroyuki Kurata
- Journal Title
  
  J Biosci Bioeng
  
  Volume: 110 Pages: 254-261
- NAID
  110007700578
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] Diffusion Model Based Spectral Clustering For Protein-Protein Interaction Networks2010
- Author(s)
  Kentaro Inoue, Weijiang Li, Hiroyuki Kurata
- Journal Title
  
  PLOS ONE
  
  Volume: 5
- NAID
  120005698511
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] Use of maximum entropy principle with Lagrange multipliers extends the feasibility of elementary mode analysis2010
- Author(s)
  Quanyu Zhao, Hiroyuki Kurata
- Journal Title
  
  J Biosci Bioeng
  
  Volume: 110 Pages: 254-261
- NAID
  110007700578
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] Diffusion Model Based Spectral Clustering For Protein-Protein Interaction Networks2010
- Author(s)
  Kentaro Inoue, Weijiang Li and Hiroyuki Kurata
- Journal Title
  
  PLoS ONE
  
  Volume: 5
- NAID
  120005698511
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22300101
[Journal Article] A gradual update method for simulating the steady-state solution of stiff differential equations in metabolic circuits2009
- Author(s)
  Emi Shiraishi Kazuhiro Maed a Hiroyuki Kurata
- Journal Title
  
  Bioprocess Biosyst. Eng. 32
  
  Pages: 283-288
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] Two-phase search (TPS) method : Nonbiased and high-speed parameter search for dynamic models of biochemical networks2009
- Author(s)
  Kazuhiro Maeda, Hiroyuki Kurata
- Journal Title
  
  IPSJ Transactions on Bioinformatics 2
  
  Pages: 1-13
- NAID
  110007990334
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016021
[Journal Article] A gradual update method for simulating the steady-state solution of stiff differential equations in metabolic circuits2009
- Author(s)
  Emi Shiraishi Kazuhiro Maeda Hiroyuki Kurata
- Journal Title
  
  Bioprocess Biosyst. Eng 32
  
  Pages: 283-288
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] Genetic modification of flux for flux prediction of mutants2009
- Author(s)
  Quauyu Zhao, Hiroyuki Kurata
- Journal Title
  
  Bioinformatics 37
  
  Pages: 1702-1708
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016021
[Journal Article] Maximum entropy decomposition of flux distribution at steady state to elementary modes2009
- Author(s)
  Quanyu Zhao, Hiroyuki Kurata
- Journal Title
  
  J Biosci Bioeng 107
  
  Pages: 84-89
- NAID
  110007042031
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20016021
[Journal Article] Visualizing Global Properties of Large Complex Networks2008
- Author(s)
  Li W., Kurata H.
- Journal Title
  
  PLoS ONE 3
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] Computer-aided rational design of the phosphotransferase system for enhanced glucose uptake in Escherichia coli2008
- Author(s)
  Yousuke Nishio, Yoshihiro Usuda, Kazuhiko Matsui, Hiroyuki Kurata
- Journal Title
  
  Molecular Systems Biology 4
  
  Pages: 160-160
- NAID
  120006366982
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] Computer-aided rational design of the phosphotransferase system for enhanced glucose uptake in Escherichia coli2008
- Author(s)
  Yousuke Nishio, Yoshihiro U suda, Kazuhiko Matsui, Hiro yuki Kurata
- Journal Title
  
  Molecular Systems Biology 4
  
  Pages: 140-150
- NAID
  120006366982
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] Mathematical identification of critical reactions in the interlocked feedback model2007
- Author(s)
  H. Kurata, T. Tanaka, F. Ohnishi
- Journal Title
  
  PLoS One 2
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] A simple model of positive feedback of the nitrogen assimilation system in E. coli2007
- Author(s)
  Kouichi Masaki, Hiroyuki Kurata
- Journal Title
  
  IPSJ Transactions on Mathematical Modeling and Its Applications 48
  
  Pages: 104-109
- NAID
  110006242974
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] Extended CADLIVE: a novel graphical notation for designing a biochemical network map that enables computational pathway analysis2007
- Author(s)
  Hiroyuki Kurata, Kentaro Inoue, Kazuhiro Maeda, Koichi Masaki, Yuki Shimokawa, Quanyu Zhao
- Journal Title
  
  Nucleic Acids Res. 35
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] Extended CADLIVE : a novel graphical notation for designing a biochemical network map that enables computational pathway analysis2007
- Author(s)
  Hiroyuki Kurata, Kentaro Inoue, Kazuhiro Maeda, Koichi Masaki, Yuki Shimokawa, Quanyu Zhao
- Journal Title
  
  Nucleic Acids Res 35
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] Mathematical identification of critical reactions in the interlocked feedback model2007
- Author(s)
  H.Kurata, T.Tanaka, F.Ohnishi
- Journal Title
  
  PLoS One 2
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] システムバイオロジーの現状と未来2006
- Author(s)
  倉田博之
- Journal Title
  
  生物物理 (in press)
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15500198
[Journal Article] Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System2006
- Author(s)
  H.Kurata, H.El Samad, R.Iwasaki, H.Othake, J.C.Doyle, I.Grigorova, C.Gross, M.Khammash
- Journal Title
  
  PLoS Computational Biology 2
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] 大腸菌窒素同化システムのポジティブフィードバック制御シンプルモデル2006
- Author(s)
  真崎浩一, 倉田博之
- Journal Title
  
  数理モデル化と問題解決研究報告 MPS-59
  
  Pages: 61-64
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System2006
- Author(s)
  H. Kurata, H. El Samad, R. Iwasaki, H. Othake, J.C. Doyle, I. Grigorova, C. Gross, and M. Khammash
- Journal Title
  
  PLoS Computational Biology 2
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] The present status and future of systems biology2006
- Author(s)
  Hiroyuki Kurata
- Journal Title
  
  Seibutsubutsuri (in press)
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15500198
[Journal Article] Effective and fast optimization for a dynamic model of the Drosophila circadian oscillator2006
- Author(s)
  Shin Tanaka, Hiroyuki Kurata, akeshi Ohashi
- Journal Title
  
  IEEE International Conference on Systems, Man, and Cybernetics
  
  Pages: 3596-3601
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] Sensitivity analysis for the E. coli nitrogen assimilation system2006
- Author(s)
  Koichi Masaki, Hiroyuki Kurata
- Journal Title
  
  The 16th International Conference on Genome Informatics 16
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] Effective and fast optimization for a dynamic model of the Drosophila circadian oscillator2006
- Author(s)
  Shin Tanaka, Hiroyuki Kurata, Takeshi Ohashi
- Journal Title
  
  IEEE International Conference on Systems, Man, and Cybernetics(Taipei, Taiwan)
  
  Pages: 3596-3601
- Data Source
  KAKENHI-PROJECT-18300098
[Journal Article] CADLIVE : Computer-Aided Design of Living Systems2005
- Author(s)
  Hiroyuki Kurata, Marie Kajiwara, Yuki Shimokawa
- Journal Title
  
  The 16th International Conference on Genome Informatics 16(CD-ROM)
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15500198
[Journal Article] A Grid Layout Algorithm for Automatic Drawing of Biochemical Networks2005
- Author(s)
  Weijiang Li, Hiroyuki Kurata
- Journal Title
  
  Bioinformatics (in press)
- Data Source
  KAKENHI-PROJECT-16014220
[Journal Article] CADLIVE Dynamic Simulator : Direct Link of Biochemical Networks to Dynamic Models2005
- Author(s)
  Hiroyuki Kurata, Kouichi Masaki, Yoshiyuki Sumida, Rei Iwasaki
- Journal Title
  
  Genome Res (in press)
- Data Source
  KAKENHI-PROJECT-16014220
[Journal Article] A large-scale dynamic simulation of the cell cycle network2005
- Author(s)
  Yamamichi, S., Kurata, H.
- Journal Title
  
  Proceedings of 7th Asia-Pacific Biochemical Engineering Conference 7,SY2-05(CD-ROM)
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15500198
[Journal Article] Surviving heat shock : Control strategy for robustness and performance2005
- Author(s)
  H.El-Samad^*, H.Kurata^*, J.C.Doyle, C.A.Gross, M.Khammash
- Journal Title
  
  Proc Nail Acad Sci U S A 102
  
  Pages: 2736-2741
- Data Source
  KAKENHI-PROJECT-16014220
[Journal Article] A large-scale dynamic simulation of the cell cycle network2005
- Author(s)
  Yamamichi, S., Kurata, H
- Journal Title
  
  Proceedings of 7th Asia-Pacific Biochemical Engineering Conference 7(CD-ROM)
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15500198
[Journal Article] Interlocked Feedback is not the Best Choice for PER Oscillators2005
- Author(s)
  Fumitaka Ohnishi, Hiroyuki Kurata
- Journal Title
  
  The 16th International Conference on Genome Informatics 16(CD-ROM)
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15500198
[Journal Article] Decomposition and Integration of Functional Modules Optimizes a Dynamic Model of Large-Scale Biochemical Networks2004
- Author(s)
  Keisuke Yoshida, Hiroyuki Kurata
- Journal Title
  
  ISPJ Symposium Series 12
  
  Pages: 97-102
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15500198
[Journal Article] Statistical And Integrative Approach For Constructing Biological Network Maps2004
- Author(s)
  Hiroyuki Kurata, Natsumi Shimizu, Kanako Misumi
- Journal Title
  
  Genome Informatics 15
  
  Pages: 161-170
- NAID
  130003997360
- Data Source
  KAKENHI-PROJECT-16014220
[Journal Article] Computer-Aided Design of Metabolic and Gene Regulatory Networks2004
- Author(s)
  Hiroyuki Kurata
- Journal Title
  
  The 10th APCChE Congress (CD-ROM)
- NAID
  130005052462
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15500198
[Journal Article] Computer-Aided Design of Metabolic and Gene Regulatory Networks2004
- Author(s)
  Hiroyuki Kurata
- Journal Title
  
  The 10th APCChE Congress 2L-06(CD-ROM)
- NAID
  130005052462
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15500198
[Journal Article] モジュール分割統合法による大規模生命分子ネットワークの最適化2004
- Author(s)
  吉田圭介, 倉田博之
- Journal Title
  
  数理モデル化と問題解決シンポジウム論文集
  
  Pages: 97-102
- Data Source
  KAKENHI-PROJECT-15500198
[Presentation] ヒト全身代謝のコンピューターモデル開発と糖尿病治療への応用2021
- Author(s)
  倉田博之
- Organizer
  The future of diabetes 2021 online conference
- Invited
- Data Source
  KAKENHI-PROJECT-19H04208
[Presentation] ヒト全身代謝のコンピュータモデルの開発2020
- Author(s)
  倉田博之，那須拡生，吉森瑠菜
- Organizer
  化学工学会第51回秋季大会
- Data Source
  KAKENHI-PROJECT-19H04208
[Presentation] 代謝均等分解サイクルのReLU応答の解析2019
- Author(s)
  倉田博之
- Organizer
  化学工学会第84回年会
- Data Source
  KAKENHI-PROJECT-16H02898
[Presentation] 嫌気好気条件下での回分培養大腸菌の代謝動力学モデル2018
- Author(s)
  松岡結, 倉田博之
- Organizer
  化学工学会第83回年会
- Data Source
  KAKENHI-PROJECT-16H02898
[Presentation] 細胞の全代謝動力学モデルの開発2018
- Author(s)
  倉田博之
- Organizer
  電子情報通信学会2018年総合大会
- Invited
- Data Source
  KAKENHI-PROJECT-16H02898
[Presentation] 酵素濃度や複数炭素源が代謝に及ぼす影響を考慮した大腸菌の中心代謝モデルの開発2018
- Author(s)
  松岡結，倉田博之
- Organizer
  化学工学会第50回秋季大会
- Data Source
  KAKENHI-PROJECT-16H02898
[Presentation] Virtual cell metabolism for systems and synthetic biology2017
- Author(s)
  Hiroyuki Kurata
- Organizer
  International Conference on Bioinformatics and Biostatistics for Agriculture, Health and Environment
- Place of Presentation
  Rajshahi (Bangladesh)
- Year and Date
  2017-01-20
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02898
[Presentation] 細胞工場のコンピュータ支援設計2017
- Author(s)
  倉田博之
- Organizer
  化学工学会第49回秋季大会
- Data Source
  KAKENHI-PROJECT-16H02898
[Presentation] スマートセルインダストリーを指向した中心代謝系の定量的モデル2017
- Author(s)
  松岡結, 倉田博之
- Organizer
  生命医薬情報学連合大会
- Data Source
  KAKENHI-PROJECT-16H02898
[Presentation] A Large-Scale Dynamic Model of Central Carbon Metabolism for Rational Design of Cell Factories.2017
- Author(s)
  Hiroyuki Kurata
- Organizer
  5th International Conference on Biological and Medical Sciences
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02898
[Presentation] バーチャルメタボリズムの開発と医療への応用2016
- Author(s)
  倉田博之
- Organizer
  化学工学会第48回秋季大会
- Place of Presentation
  徳島大学　徳島大学
- Year and Date
  2016-09-06
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02898
[Presentation] 増永拓之、倉田博之、動的感度を用いたErbBシグナル伝達ネットワークのロバストネス解析2016
- Author(s)
  増永拓之、倉田博之
- Organizer
  化学工学会第81回年会
- Place of Presentation
  関西大学
- Year and Date
  2016-03-13
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] 情報工学を基盤としたバイオメディカルインフォマティクスおよびコンピュータ支援による診断予防治療介護医薬品開発システム2015
- Author(s)
  倉田博之
- Organizer
  第2回シンポジウムYUBECS2 「次世代治療・診断技術の開発のための医工学」
- Place of Presentation
  東京田町
- Year and Date
  2015-03-10
- Invited
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] Dynamic modeling of the E. coli ammonium assimilation network2015
- Author(s)
  Kazuhiro Maeda, Fred Boogerd, Hans Westerhoff, Hiroyuki Kurata
- Organizer
  Proceedings of GIW/InCoB
- Place of Presentation
  Tokyo
- Year and Date
  2015-09-09
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] For mutual repression: Noise induced bimodality, even multimodality in deterministically monostable description without cooperative binding2015
- Author(s)
  A.B.M. Shamim Ul Hasan, Hiroyuki Kurata
- Organizer
  Proceedings of GIW/InCoB, Odaiba
- Place of Presentation
  Tokyo
- Year and Date
  2015-09-09
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] Dynamic sensitivity analysis of ErbB signaling network2015
- Author(s)
  Hiroyuki Masunaga, Ryunosuke Itasaki, Kentaro Inoue, Mariko Okada, Hiroyuki Kurata
- Organizer
  Proceedings of GIW/InCoB
- Place of Presentation
  Tokyo
- Year and Date
  2015-09-09
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] Developing a kinetic model of the E. coli ammonium assimilation network2015
- Author(s)
  Kazuhiro Maeda, Fred C. Boogerd, Hans V. Westerhoff, Hiroyuki Kurata
- Organizer
  Proceedings of the 16th International Conference on Systems Biology
- Place of Presentation
  Singapore
- Year and Date
  2015-11-23
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] Metabolome analysis of CHO cell culture under different stresses2015
- Author(s)
  Md. Bahadur Badsha, Hiroyuki Kurata, Masayuki Onitsuka, Takushi Oga, Takeshi Omasa
- Organizer
  Proceedings of GIW/InCoB
- Place of Presentation
  Tokyo
- Year and Date
  2015-09-09
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] Effect of NaCl and Trehalose Condition on Antibody Producing CHO Cell Culture.2015
- Author(s)
  Md. Bahadur Badsha, Hiroyuki Kurata, Masayoshi Onitsuka, Takushi Oga, Takeshi Omasa
- Organizer
  Proceedings of Asian Congress on Biotechnology 2015 (ACB2015)
- Place of Presentation
  Kuala Lumpur, Malaysia
- Year and Date
  2015-11-15
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] Construction of a dynamic model for the central metabolism of Escherichia coli2015
- Author(s)
  Nusrat Jahan, Kazuhiro Maeda, Yu Matsuoka, Yurie Sugimoto, Hiroyuki Kurata
- Organizer
  Proceedings of GIW/InCoB
- Place of Presentation
  Tokyo
- Year and Date
  2015-09-09
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] A detailed kinetic model of E. coli central metabolism in a batch culture2015
- Author(s)
  Nusrat Jahan, Kazuhiro Maeda, Yu Matsuoka, Yurie Sugimoto, Hiroyuki Kurata
- Organizer
  Proceedings of Asian Congress on Biotechnology 2015 (ACB2015)
- Place of Presentation
  Kuala Lumpur, Malaysia
- Year and Date
  2015-11-15
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] For mutual repression: Noise induced bimodality, even multimodality in deterministically monostable description without cooperative binding2015
- Author(s)
  A.B.M. Shamim Ul Hasan, Hiroyuki Kurata
- Organizer
  Proceedings of GIW/InCoB
- Place of Presentation
  Odaiba, Tokyo
- Year and Date
  2015-09-09
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-26119716
[Presentation] 抗体生産強化のためのCHO細胞メタボロームの統計解析2015
- Author(s)
  倉田博之
- Organizer
  化学工学会第47回秋季大会
- Place of Presentation
  北海道大学
- Year and Date
  2015-09-19
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] 代謝とシステムバイオロジー2014
- Author(s)
  倉田博之
- Organizer
  第87回日本生化学会大会
- Place of Presentation
  京都国際会議場
- Year and Date
  2014-10-17
- Invited
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] 生物学的基本ネットワークの組み立てによるダイナミックモデルの合理的設計2014
- Author(s)
  倉田博之，前田和勲
- Organizer
  化学工学会第79年会
- Place of Presentation
  岐阜大学
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] 設計原理に基づく生物システムの合理的合成2014
- Author(s)
  倉田博之
- Organizer
  平成26年度JSBi生命システム理論研究会
- Place of Presentation
  京都大学iPS細胞研究所
- Year and Date
  2014-11-18
- Invited
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] 設計原理に基づく生物システムの合理的合成2014
- Author(s)
  倉田博之
- Organizer
  平成26年度JSBi生命システム理論研究会
- Place of Presentation
  京都大学iPS細胞研究所
- Year and Date
  2014-11-18
- Invited
- Data Source
  KAKENHI-PUBLICLY-26119716
[Presentation] ゲノムスケールヒト代謝ネットワークの高速エレメンタリモード解析2013
- Author(s)
  倉田博之、Badsha Md. Bahadur, 坪井遼
- Organizer
  化学工学会第45回秋季大会
- Place of Presentation
  岡山大学
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] Computational framework for integration of metabolic flux analysis with its associated omics data2012
- Author(s)
  Hiroyuki Kurata, Soma Tabata, Quanyu Zhao
- Organizer
  Proceedings of the 8th Asia-Pacific Conference on Algal Biotechnology and 1st International Conference on Coastal Biotechnology
- Place of Presentation
  Adelaide, Australia
- Year and Date
  2012-07-09
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] Efficient Grid Graph Layout by Approximate Point-set Matching on the Plane2012
- Author(s)
  Shinichi Shimozono, Kentaro Inoue, Hiroyuki Kurata
- Organizer
  IPSJ SIG Technical Report, 2012-BIO-30
- Place of Presentation
  Iizuka(Oralpresentation)
- Year and Date
  2012-08-09
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] Computational framework for integration of metabolic flux analysis with its associated omics data2012
- Author(s)
  Hiroyuki Kurata, Soma Tabata, Quanyu Zhao
- Organizer
  Proceedings of the 14th International Biotechnology Symposium and Exhibition (IBS2012)
- Place of Presentation
  Deagu, Korea
- Year and Date
  2012-09-18
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] Computational framework for integration of metabolic flux analysis with its associated omics data.2012
- Author(s)
  Hiroyuki Kurata, Soma Tabata, Quanyu Zhao
- Organizer
  Proceedings of the14th International Biotechnology Symposium and Exhibition (IBS2012)
- Place of Presentation
  Deagu, Korea
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] アンモニア同化システムのダイナミックモデルの開発2012
- Author(s)
  前田和勲, 倉田博之
- Organizer
  化学工学会第77年会
- Place of Presentation
  工学院大学,東京
- Year and Date
  2012-03-17
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] Metabolic Engineering for Systematic Organization and Analysis of Complex Metabolic Networks2012
- Author(s)
  Md. Bahadur Badsha, Nusrat Jahan, Md. Nurul Haque Mollah, Hiroyuki Kurata
- Organizer
  Proceedings of the International Conference on Statistical Data Mining for Bioinformatics Health Agriculture and Environment
- Place of Presentation
  University of Rajshahi, Bangladesh
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] Computational framework for integration of metabolic flux analysis with its associated omics data.2012
- Author(s)
  Hiroyuki Kurata, Soma Tabata, Quanyu Zhao
- Organizer
  Proceedings of the 8th Asia-Pacific Conference on Algal Biotechnology and 1st International Conference on Coastal Biotechnology
- Place of Presentation
  Adelaide, Australia
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] 大腸菌アンモニア同化システムのダイナミックモデルの構築2012
- Author(s)
  前田和勲,倉田博之
- Organizer
  情報処理学会研究報告,2012-BIO-30
- Place of Presentation
  飯塚(Oralpresentation)
- Year and Date
  2012-08-09
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] The effect of implementing objective functions in analyzing the changes of enzyme activity profiles2012
- Author(s)
  Noorlin Mohd Ali, Kentaro Inoue, Soma Tabata, Hiroyuki Kurata
- Organizer
  IPSJ SIG Technical Report, 2012-BIO-30
- Place of Presentation
  Iizuka(Oralpresentation)
- Year and Date
  2012-08-09
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] Computational framework for integration of metabolic flux analysis with its associated omics data.2012
- Author(s)
  Hiroyuki Kurata, Soma Tabata, Quanyu Zhao
- Organizer
  Proceedings of the14th International Biotechnology Symposium and Exhibition (IBS2012)
- Place of Presentation
  Deagu, Korea
- Year and Date
  2012-09-18
- Data Source
  KAKENHI-PUBLICLY-23134506
[Presentation] Sequential Extraction of Several Gene-sets with Proper Groups of Individuals for Gene Expression Data Analysis2012
- Author(s)
  Md. Bahadur Badsha, Nusrat Jahan, Md. Nurul Haque Mollah, Hiroyuki Kurata
- Organizer
  Proceedings of the International Conference on StatisticalData Mining for Bioinformatics Health Agriculture and Environment
- Place of Presentation
  University of Rajshahi, Bangladesh
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] Computational framework for integration of metabolic flux analysis with its associated omics data.2012
- Author(s)
  Hiroyuki Kurata, Soma Tabata, Quanyu Zhao
- Organizer
  Proceedings of the 8th Asia-Pacific Conference on Algal Biotechnology and 1st International Conference on Coastal Biotechnology
- Place of Presentation
  Adelaide, Australia
- Year and Date
  2012-07-09
- Data Source
  KAKENHI-PUBLICLY-23134506
[Presentation] Sequential Extraction of Several Gene-sets with Proper Groups of Individuals for Gene Expression Data Analysis2012
- Author(s)
  Md. Bahadur Badsha, Nusrat Jahan, Md. Nurul Haque Mollah, Hiroyuki Kurata, , University of Rajshahi, Bangladesh, 22-24 December 2012.
- Organizer
  Proceedings of the International Conference on Statistical Data Mining for Bioinformatics Health Agriculture and Environment
- Place of Presentation
  Bangladesh
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] Metabolic Engineering for Systematic Organization and Analysis of Complex Metabolic Networks,2012
- Author(s)
  Md. Bahadur Badsha, Nusrat Jahan, Md. Nurul Haque Mollah, Hiroyuki Kurata,
- Organizer
  Proceedings of the International Conference on Statistical Data Mining for Bioinformatics Health Agriculture and Environment
- Place of Presentation
  Bangladesh
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] Maximum entropy principle optimizes the large-scale elementary modes for a broad raqgne of genetic mutants2011
- Author(s)
  Hiroyuki Kurata, Quanyu Zhao
- Organizer
  Asian Congress on Biotechnology
- Place of Presentation
  Shanghai
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] オミックスデータを代謝システムへ統合するためのパスウエイ解析モデル2011
- Author(s)
  倉田博之
- Organizer
  2011年度統計関連学会連合大会
- Place of Presentation
  九州大学伊都キャンパス
- Year and Date
  2011-09-06
- Data Source
  KAKENHI-PUBLICLY-23134506
[Presentation] Robustness Analysis of Feedback Systems of Circadian Rhythm2011
- Author(s)
  Kazuhiro Maeda, Hiroyuki Kurata
- Organizer
  IPSJ SIG Technical Report, 2011-BIO-24
- Place of Presentation
  Kyoto(Oral presentation)
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] Hybrid Layout Algorithm using Approximate Pattern Matching in Two Dimensional Space for BiochemicalNetwork Layout2011
- Author(s)
  Kentaro Inoue, Shinichi Shimozono, Hideaki Yoshida and Hiroyuki Kurata
- Organizer
  IPSJ SIG Technical Report, 2011-BIO-24
- Place of Presentation
  Kyoto(Oral presentation)
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] An optimization aiming for diverse parameter sets of a large-scale and dynamic model of biochemical networks.2010
- Author(s)
  Hiroshi Minamida, Kazuhiro Maeda, Hiroyuki Kurata
- Organizer
  The 9-th International Conference on Bioinformatics (InCoB2010)
- Place of Presentation
  Tokyo
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] 多様な遺伝子組換え微生物における代謝流束分布の新規な予測法2010
- Author(s)
  倉田博之, 田畑総真
- Organizer
  化学工学会第41回秋季大会
- Place of Presentation
  同志社大学
- Year and Date
  2010-09-08
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] CADLIVE: Data Integrator with Network Layout Module2010
- Author(s)
  Kentaro Inoue, Shin Shimozono, Hideaki Yoshida, Sayaka Tomeda, Kazuya Fukami, Shinpei Tonami, Hiroyuki Kurata
- Organizer
  The 11-th international Conference on Systems biology
- Place of Presentation
  Edinburgh
- Year and Date
  2010-10-16
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] Quasi-Multiparameter Sensitivity Analysis reveals Remarkable Robustness of Dual Feedback Circadian Oscillators.2010
- Author(s)
  Kazuhiro Maeda, Hiroyuki Kurata
- Organizer
  The 11-th international Conference on Systems biology
- Place of Presentation
  Edinburgh
- Year and Date
  2010-10-16
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] Development of elementary mode-based algorithms for designing a metabolic system.2010
- Author(s)
  Souma Tabata, Quanyu Zhao, Hiroyuki Kurata
- Organizer
  The 9-th International Conference on Bioinformatics (InCoB2010)
- Place of Presentation
  Tokyo
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] A Novel Spectral Clustering of Protein Interaction Networks.2010
- Author(s)
  Kentaro Inoue, Hiroyuki Kurata
- Organizer
  The 9-th International Conference on Bioinformatics (InCoB2010)
- Place of Presentation
  Tokyo(InCoB2010 Best Poster Award)
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] An integrative and practical strategy for optimizing a large-scale dynamic model of biochemical systems2010
- Author(s)
  Kazuhiro Maeda, Yuya Fukano, Daichi Nitta, Shunsuke Yamamichi, Hiroyuki Kurata
- Organizer
  The 9-th International Conference on Bioinformatics (InCoB2010)
- Place of Presentation
  Tokyo(Oral presentation)
- Data Source
  KAKENHI-PROJECT-22300101
[Presentation] 生物学と工学の統合にむけて2009
- Author(s)
  倉田博之, Quanyu Zhao
- Organizer
  化学工学会第41回秋季大会
- Place of Presentation
  広島大学
- Year and Date
  2009-09-16
- Data Source
  KAKENHI-PROJECT-20016021
[Presentation] Extended CADLIVE : Computer-aided rational design of living systems(S02-1-2)2008
- Author(s)
  Kentaro Inoue, Tetsuya Shimabara, Toshikazu Onaka, Erika Fujiura, Hiroyuki Kurata
- Organizer
  The proceedings of the 2th annual conference of the Japanese Society for Bioinformatics
- Place of Presentation
  Osaka
- Data Source
  KAKENHI-PROJECT-18300098
[Presentation] Computer-aided rational design of the phosphotransferase system for enhanced glucose uptake in Escherichia coli(Oral Presentation)2008
- Author(s)
  Yousuke Nishio, Yoshihiro Usuda, Kazuhiko Matsui, Hiroyuki Kurata
- Organizer
  Supplement of Journal of Biotechnology : 13 th International Biotechnology Symposium and Exhibition (IBS2008)
- Place of Presentation
  Dailen, China
- Data Source
  KAKENHI-PROJECT-18300098
[Presentation] Prediction of flux distribution of mutants by enzyme control fluxes with maximum entropy principal(Oral Presentation)2008
- Author(s)
  Quanyu Zhao, Hiroyuki Kurata
- Organizer
  Supplement of Journal of Biotechnology : 13 th International Biotechnology Symposium and Exhibition (IBS2008)
- Place of Presentation
  Dailen, China
- Data Source
  KAKENHI-PROJECT-18300098
[Presentation] Searching multiple sets of kinetic parameters values reproducing target experimental data in dynamic biochemical models2008
- Author(s)
  Kazuhiro Maeda, Hiroyuki Kurata
- Organizer
  The proceedings of the 2008th annual conference of the Japanese Society for Bioinfor matics
- Place of Presentation
  大阪
- Year and Date
  2008-12-15
- Data Source
  KAKENHI-PROJECT-20016021
[Presentation] Searching multiple sets of kinetic parameters values reproducing target experimental data in dynamic biochemical models(S063-1-2)2008
- Author(s)
  Kazuhiro Maeda, Hiroyuki Kurata
- Organizer
  The proceedings of the 2008th annual conference of the Japanese Society for Bioinformatics
- Place of Presentation
  Osaka
- Data Source
  KAKENHI-PROJECT-18300098
[Presentation] CADLIVE : Computer aided design of biochemical systems(Oral Presentation)2008
- Author(s)
  Hiroyuki Kurata
- Organizer
  Supplement of Journal of Biotechnology : 13 th International Biotechnology Symposium and Exhibition (IBS2008)
- Place of Presentation
  Dailen, China
- Data Source
  KAKENHI-PROJECT-18300098
[Presentation] CADLIVE : Computer aided design of biochemical systems. Supp lement of Journal of Biotechnology2008
- Author(s)
  Hiroyuki Kurata
- Organizer
  13 th International Biotechnology Symposium and Exhibition (IBS2008)
- Place of Presentation
  Dailen, China
- Data Source
  KAKENHI-PROJECT-18300098
[Presentation] CADLIVE for Construction and Dynamic Simulation of Biochemical Networks2007
- Author(s)
  Kazuhiro Maeda, Hiroyuki Kurata
- Organizer
  Proceedings of Asia Pacific Biochemical Engineering Conference
- Place of Presentation
  Taipei
- Data Source
  KAKENHI-PROJECT-18300098
[Presentation] Sensitivity analysis for the E. coli nitrogen assimilation system(16 : P010-1-2)2006
- Author(s)
  Koichi Masaki, Hiroyuki Kurata
- Organizer
  The 16th International Conference on Genome Informatics
- Place of Presentation
  Yokohama
- Data Source
  KAKENHI-PROJECT-18300098
[Presentation] 大腸菌窒素同化システムのポジティブフィードバック制御シンプルモデル2006
- Author(s)
  真崎浩一, 倉田博之
- Organizer
  数理モデル化と問題解決研究報告
- Place of Presentation
  名古屋大学(MPS-59 : 61-64)
- Data Source
  KAKENHI-PROJECT-18300098
[Presentation] Synthesis and decomposition approach for rational design of a biochemical network
- Author(s)
  Hiroyuki Kurata
- Organizer
  Third BMIRC International Symposium for Virtual Physiological Human
- Place of Presentation
  Fukuoka
- Year and Date
  2015-03-05 – 2015-03-06
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] A Study of Genetic Noise in Biochemical Network
- Author(s)
  A.B.M. Shamim Ul Hasan, Hiroyuki Kurata
- Organizer
  GIW / ISCB-Asia 2014
- Place of Presentation
  Tokyo
- Year and Date
  2014-12-15 – 2014-12-17
- Data Source
  KAKENHI-PUBLICLY-26119716
[Presentation] 生物システムの合理的設計を支援するBioFNetデータベース
- Author(s)
  倉田博之
- Organizer
  化学工学会第46回秋季大会
- Place of Presentation
  九州大学
- Year and Date
  2014-09-17 – 2014-09-19
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] Toward a quantitative in silico model for the E. coli ammonium assimilation system
- Author(s)
  Kazuhiro Maeda, Fred C. Boogerd, Frank J. Bruggeman, Hans V. Westerhoff, Hiroyuki Kurata
- Organizer
  Third BMIRC International Symposium for Virtual Physiological Human
- Place of Presentation
  Fukuoka
- Year and Date
  2015-03-05 – 2015-03-06
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] アンモニア同化システムの詳細なダイナミックモデル
- Author(s)
  倉田博之
- Organizer
  化学工学第80回年会
- Place of Presentation
  芝浦工業大学
- Year and Date
  2015-03-19 – 2015-03-21
- Data Source
  KAKENHI-PROJECT-25280107
[Presentation] Stochastic Simulation of Dynamical Behavior in Gene Regulatory Network
- Author(s)
  A.B.M. Shamim Ul Hasan, Hiroyuki Kurata
- Organizer
  the Third BMIRC International Symposium for Virtual Physiological Human
- Place of Presentation
  Ｆｕｋｕｏｋａ
- Year and Date
  2015-03-05 – 2015-03-06
- Data Source
  KAKENHI-PUBLICLY-26119716
[Presentation] Analytical study of robustness of a negative feedback oscillator by multiparameter sensitivity
- Author(s)
  Kazuhiro Maeda, Hiroyuki Kurata
- Organizer
  GIW/ISCB-Asia 2014
- Place of Presentation
  Tokyo
- Year and Date
  2014-12-15 – 2014-12-17
- Data Source
  KAKENHI-PROJECT-25280107

1. SHIMIZU Kazuyuki (00150318)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
2. KAWASAKI Hiroaki (60332623)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
3. MORI Hirotada (90182203)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. TAIRA Kazunari (10261778)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. AWAI Shigenori (10168544)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. MIYAGISHI Makoto (30323538)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. MIYAMOTO Shigeaki (40219811)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. NAKAGAWA Hiroyuki (80274562)

# of Collaborated Projects: 1 results

# of Collaborated Products: 6 results
9. 古崎新太郎 (40011209)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 坂井宏旭 (10707037)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
11. SAKAI Yasuyuki

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. HASAN MD MEHEDI

# of Collaborated Projects: 1 results

# of Collaborated Products: 9 results
13. MAEDA Kazuhiro

# of Collaborated Projects: 0 results

# of Collaborated Products: 6 results
14. KAWAHARA Kohichi

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Kurata Hiroyuki 倉田 博之

KURATA Hiroyuki 倉田 博之

倉田 博之 クラタ ヒロユキ

Research Projects

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Co-Researchers

オミックスを統合するヒト全身代謝マルチスケール動力学モデルの開発Principal Investigator

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Development of a large-scale kinetic model of human organ systemsPrincipal Investigator

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Structure-based Computer-Aided Drug Design with a Deep Neural Network ApproachPrincipal Investigator

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Development of neural network model for prediction of recovery from spinal cordPrincipal Investigator

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dFBA model of genome-scale human metabolism and its application to multi-drug combination therapyPrincipal Investigator

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ノイズが引き起こす確率的挙動を考慮した生体分子ネットワークの実用的設計Principal Investigator

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Virtual Metabolism: Development of a standard dynamic model of metabolic systemsPrincipal Investigator

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メタボロームを代謝ネットワークへ統合する数理モデルの開発Principal Investigator

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Biological design principle-based synthetic biologyPrincipal Investigator

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分子ネットワークのコンピュータ支援設計法の開発とグルコース同化システムへの応用Principal Investigator

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Dynamic simulation and system analysis for gene regulatory networksPrincipal Investigator

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ネットワークマップに基づく大規模生命分子ネットワークのロバスト解析Principal Investigator

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Image analysis of fibroblast movement regulation and dynamic simulationPrincipal Investigator

Principal Investigator

Kurata Hiroyuki 倉田博之

KURATA Hiroyuki 倉田博之

倉田博之クラタヒロユキ