Kaminuma Eli 神沼英里

… Alternative Names

KAMINUMA Eli 神沼英里

山本英里ヤマモトエリ

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Researcher Number	90314559
Other IDs	https://orcid.org/0009-0002-6344-0663
Affiliation (Current)	2025: 名古屋市立大学, 大学院芸術工学研究科, 准教授
Affiliation (based on the past Project Information) *help	2022 – 2025: 名古屋市立大学, 大学院芸術工学研究科, 准教授 2012 – 2014: 国立遺伝学研究所, 生命情報研究センター, 助教 2008: The Institute of Physical and Chemical Research, 生命情報基盤研究部門, 研究員 2007: The Institute of Physical and Chemical Research, オミックス情報統合化研究チーム, 研究員 2005 – 2006: 独立行政法人理化学研究所, ゲノム変異機能情報研究チーム, 研究員 … More 2004: 独立行政法人理化学研究所, ゲノム知識ベース研究開発チーム, 研究員 2001: 和歌山大, システム工学部, 助手 2000: 和歌山大学, システム工学部, 助手 Less
Review Section/Research Field	Principal Investigator Bioinformatics/Life informatics / Basic Section 90010:Design-related / 計算機科学 Except Principal Investigator Sections That Are Subject to Joint Review: Basic Section03060:Cultural assets study-related , Basic Section03070:Museology-related / Basic Section 03070:Museology-related / Basic Section 03060:Cultural assets study-related / Genome biology
Keywords	Principal Investigator トライコーム / μX線CT / 3次元形状計測 / シロイヌナズナ / デザイン / 道路網 / 街路樹 / 深層学習 / デジタルツイン / ゲノム多様性 … More / 遺伝的多様性 / DNA多型 / WGS / 一塩基多型 / 解析ワークフロー / データベース / 多様性指標 / Sequence Read Archive / 次世代シークエンサ / SNP / 変異体スクリーニング / 形態形質 / in silico / bioluminescence / Luciferase reporter / digital in situ hybridization / time-lapse images / 標準形状モデル / スクリーニング / 変異体 / バイオインフォマティクス / 葉片 / 葉面特異的分化器官 / 形質 / 個人性 / 形状 / 発話 / 構音 / 顔 / CG … More Except Principal Investigator 機械学習・深層学習 / モニタリング / 構造安全性 / 組積造 / 文化財 / denovo アセンブル / クラウドコンピューティング / de novoアセンブリ / SNP / リシーケンス / HLA / ChIP-Seq / RNA-Seq / クラウド / 解析パイプライン / 次世代シーケンサー / ゲノム Less

人間と生成AIエージェントの協働によるものづくりDX機器人材育成の効率化の研究Principal Investigator
- Principal Investigator
  
  神沼英里
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 90010:Design-related
- Research Institution
  Nagoya City University
Monitoring Technologies on Structural Safety of Cultural Property Masonry Structures
- Principal Investigator
  
  青木孝義
- Project Period (FY)
  2024 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 03060:Cultural assets study-related
  Basic Section 03070:Museology-related
  Sections That Are Subject to Joint Review: Basic Section03060:Cultural assets study-related , Basic Section03070:Museology-related
- Research Institution
  Nagoya City University
Deep learning-based layout design of urban roadside trees on the road network within digital twinsPrincipal Investigator
- Principal Investigator
  
  神沼英里
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 90010:Design-related
- Research Institution
  Nagoya City University
Integration of plant strain SNPs using NGS Sequence Read Archive and diversity statistics analysisPrincipal Investigator
- Principal Investigator
  
  KAMINUMA Eli
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  National Institute of Genetics
The Development of a cloud computing-based annotation system for next-generation sequencing data
- Principal Investigator
  
  NAGASAKI Hideki
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Genome biology
- Research Institution
  National Institute of Genetics
Constructing morphological template models of Arabidopsis thaliana for computational mutant screeningPrincipal Investigator
- Principal Investigator
  
  KAMINUMA Eli
- Project Period (FY)
  2006 – 2008
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The Institute of Physical and Chemical Research
シロイヌナズナの葉面特異的分化器官の3次元形状計測と形質定量化Principal Investigator
- Principal Investigator
  
  神沼英里
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The Institute of Physical and Chemical Research
CG顔の構音に個人性を反映する身体形状パラメータの研究Principal Investigator
- Principal Investigator
  
  山本英里
- Project Period (FY)
  2000 – 2001
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  計算機科学
- Research Institution
  Wakayama University

All 2015 2014 2013 2012 2009 2008 2005 2004 Other

All Journal Article Presentation Book

[Book] 実験医学別冊　「次世代シークエンス解析スタンダード」2014
- Author(s)
  長崎英樹、望月孝子、谷沢靖洋、神沼英里、中村保一
- Total Pages
  8
- Publisher
  羊土社
- Data Source
  KAKENHI-PROJECT-24510273
[Book] 実験医学別冊「次世代シークエンス解析スタンダード」:Ⅵ-4 DDBJ Read Annotation Pipeline 解析パイプラインによるRNA-Seq de novo assemblyとイネ多型解析2014
- Author(s)
  長崎英樹,望月孝子,谷沢靖洋,神沼英里,中村保一
- Publisher
  羊土社
- Data Source
  KAKENHI-PROJECT-24500366
[Journal Article] DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data.2013
- Author(s)
  Nagasaki H, Mochizuki T, Kodama Y, Saruhashi S, Morizaki S, Sugawara H, Ohyanagi H, Kurata N, Okubo K, Takagi T, Kaminuma E, Nakamura Y.
- Journal Title
  
  DNA Res.
  
  Volume: 20 Pages: 383-390
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24510273
[Journal Article] Quantitative analysis of heterogeneous spatial distribution of Arabidopsis leaf trichomes using micro X-ray computed tomography2008
- Author(s)
  Kaminuma E, Yoshizumi T, Wada T, Matsui M, Toyoda T.
- Journal Title
  
  The Plant Journal 56
  
  Pages: 470-482
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18700296
[Journal Article] Three-dimensional definition of leaf morphological traits of Arabidopsis in silico phenotypic analysis2005
- Author(s)
  E.Kaminuma, et al.
- Journal Title
  
  Journal of Bioinformaitcs and Computational Biology 3・2
  
  Pages: 401-414
- Data Source
  KAKENHI-PROJECT-16700278
[Journal Article] In silico phenotypic screening method of mutants based on statistical modeling of genetically mixed samples2005
- Author(s)
  E.Kaminuma, et al.
- Journal Title
  
  Journal of Bioinformaitcs and Computational Biology 3.6
  
  Pages: 1281-1293
- Data Source
  KAKENHI-PROJECT-16700278
[Journal Article] Automatic quantification of morphological traits via three-dimensional measurement of Arabidopsis2004
- Author(s)
  E.Kaminuma, et al.
- Journal Title
  
  The Plant Journal 38・2
  
  Pages: 358-365
- Data Source
  KAKENHI-PROJECT-16700278
[Journal Article] In silico phenotypic analysis of Arabidopsis based on shape model reconstruction from 3D images by microfocus X-ray computed tomography
- Author(s)
  E.Kaminuma, et al.
- Journal Title
  
  (発表予定)
- Data Source
  KAKENHI-PROJECT-16700278
[Presentation] DNA Polymorphism Database from New-Generation Sequence Read Archive and Analytical Workflow2015
- Author(s)
  Mochizuki T, Tanizawa Y, Fujisawa T, Nikoh N, Toyoda A, Fujiyama A, Kurata N, Nagasaki H, Shimizu T, Kaminuma E, Nakamura Y
- Organizer
  Plant & Animal Genome XXIII
- Place of Presentation
  San Diego (USA)
- Year and Date
  2015-01-14
- Data Source
  KAKENHI-PROJECT-24500366
[Presentation] Constructing an integrated DNA polymorphism database and an analytical workflow for plants and bacteria2014
- Author(s)
  Takako Mochizuki, Takatomo Fujisawa, Yasuhiro Tanizawa, Hideki Nagasaki, Eli Kaminuma, Tokurou Shimizu, Atsushi Toyoda, Asao Fujiyama, Nori Kurata, Naruo Nikoh and Yasukazu Nakamura
- Organizer
  Plant and Animal Genome XXII (PAG XXII) Conference
- Place of Presentation
  Town and Country Hotel, San Diego, USA
- Data Source
  KAKENHI-PROJECT-24500366
[Presentation] 遺伝研スパコン概要と、NGSアーカイブデータを用いたSNP解析2014
- Author(s)
  神沼英里、望月孝子、長崎英樹、谷沢靖洋、小笠原理、大久保公策、高木利久、中村保一
- Organizer
  日本育種学会第126回講演会「NGS 使い倒し講座 - Breeding Informatics 研究 XIII」
- Place of Presentation
  南九州大学(都城市)
- Year and Date
  2014-09-26
- Invited
- Data Source
  KAKENHI-PROJECT-24500366
[Presentation] Liverwort Genome Analysis using DDBJ Pipeline and Construction of the Genome Annotation Database2013
- Author(s)
  Hideki Nagasaki, Takatomo Fujisawa, Takako Mochizuki, Eli Kaminuma, Yasukazu Nakamura et al.
- Organizer
  International Plant & Animal Genome XXI
- Place of Presentation
  San Diego, CA, USA
- Data Source
  KAKENHI-PROJECT-24510273
[Presentation] NGS由来ゲノムワイド多型マーカ構築とそのRDF注釈情報統合化2013
- Author(s)
  Eli Kaminuma, Takatomo Fujisawa, Takako Mochizuki, Yasuhiro Tanizawa, Atsushi Toyoda, Asao Fujiyama, Nori Kurata, Tokurou Shimizu, Yasukazu Nakamura
- Organizer
  第36回日本分子生物学会年会
- Place of Presentation
  神戸国際会議場
- Data Source
  KAKENHI-PROJECT-24500366
[Presentation] DNA多型統合データベースと解析ワークフローの構築 : 植物、微生物への取り組み2013
- Author(s)
  望月孝子, 藤澤貴智, 谷澤靖洋, 長崎英樹, 神沼英里, 大柳一, 清水徳朗, 豊田敦, 藤山秋佐夫, 倉田のり, 二河成男, 中村保一
- Organizer
  第36回日本分子生物学会年会
- Place of Presentation
  神戸国際会議場
- Data Source
  KAKENHI-PROJECT-24500366
[Presentation] 新型シークエンサのアーカイブ配列と解析パイプライン：系統間SNP解析を事例として2012
- Author(s)
  神沼英里
- Organizer
  第122回日本育種学会講演会ワークショップ06 "育種のための情報解析ツール使い倒し塾"
- Place of Presentation
  京都産業大学
- Invited
- Data Source
  KAKENHI-PROJECT-24500366
[Presentation] DDBJパイプラインによるゼニゴケゲノム解析とゲノムアノテーションデータベースの構築2012
- Author(s)
  長崎英樹, 藤澤貴智, 望月孝子, 神沼英里, 中村保一ら
- Organizer
  第35回日本分子生物学会年会
- Place of Presentation
  福岡国際会議場・マリンメッセ福岡
- Data Source
  KAKENHI-PROJECT-24510273
[Presentation] シロイヌナズナのオミックス総合データベース2009
- Author(s)
  豊田哲郎, 神沼英里
- Organizer
  第50回日本植物生理学会年会シンポジウム
- Place of Presentation
  名古屋
- Data Source
  KAKENHI-PROJECT-18700296
[Presentation] シロイヌナズナLucTagラインを用いた遺伝子発現定量解析2008
- Author(s)
  神沼英里, 吉積毅, 栗山朋子, 越智子, 武藤周, 松井南, 豊田哲郎
- Organizer
  人工知能学会第36回分子生物情報研究会(SIG-MBI)
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-18700296
[Presentation] シロイヌナズナLucTagラインを用いた遺伝子発現定量解析2008
- Author(s)
  神沼英里, 吉積毅, 栗山朋子, 越智子, 武藤周, 豊田哲郎, 松井南
- Organizer
  人工知能学会第36回分子生物情報研究会(SIG-MBI)
- Place of Presentation
  理化学研究所横浜研究所中央研究棟2階
- Year and Date
  2008-01-11
- Data Source
  KAKENHI-PROJECT-18700296
[Presentation] 植物形状Template modelを用いたLucTagラインの時空間遺伝子発現定量解析2008
- Author(s)
  神沼英里, 吉積毅, 栗山朋子, 越智子, 武藤周, 松井南, 豊田哲郎
- Organizer
  第72回日本植物学会大会シンポジウム「バイオイメージングと画像情報処理が拓くもの」
- Place of Presentation
  高知
- Data Source
  KAKENHI-PROJECT-18700296
[Presentation] デジタルwhole mount in situ hybridizationに向けたシロイヌナズナLucTagラインの遺伝子発現時系列画像の定量化2008
- Author(s)
  神沼英里, 吉積毅, 栗山朋子, 越智子, 武藤周, 豊田哲郎, 松井南
- Organizer
  植物生理学会第49回年会
- Place of Presentation
  札幌コンベンションセンター
- Year and Date
  2008-03-22
- Data Source
  KAKENHI-PROJECT-18700296
[Presentation] デジタルwhole mount in situ hybridizationに向けたシロイヌナズナLucTagラインの遺伝子発現時系列画像の定量化2008
- Author(s)
  神沼英里, 吉積毅, 栗山朋子, 越智子, 武藤周, 松井南, 豊田哲郎
- Organizer
  第49回日本植物生理学会年会
- Place of Presentation
  札幌
- Data Source
  KAKENHI-PROJECT-18700296
[Presentation] 植物形状Template Model を用いたLucTag Lineの時空間遺伝子発現定量解析2008
- Author(s)
  神沼英里, 吉積毅, 栗山朋子, 越智子, 武藤周, 松井南, 豊田哲郎,
- Organizer
  植物学会第72回大会シンポジウム
- Place of Presentation
  高知大学
- Year and Date
  2008-09-26
- Data Source
  KAKENHI-PROJECT-18700296

1. NAGASAKI Hideki (70624451)

# of Collaborated Projects: 2 results

# of Collaborated Products: 9 results
2. TOYODA Tetsuro (20342818)

# of Collaborated Projects: 1 results

# of Collaborated Products: 8 results
3. MATSUI Minami (80190396)

# of Collaborated Projects: 1 results

# of Collaborated Products: 7 results
4. YOSHIZUMI Takeshi (80342872)

# of Collaborated Projects: 1 results

# of Collaborated Products: 7 results
5. MOCHIZUKI Takako (40709284)

# of Collaborated Projects: 1 results

# of Collaborated Products: 6 results
6. 大野暁彦 (00758401)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. 青木孝義 (10202467)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. 張景耀 (50546736)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 木村俊明 (60816057)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Kaminuma Eli 神沼 英里

KAMINUMA Eli 神沼 英里

山本 英里 ヤマモト エリ

Research Projects

Research Products

Co-Researchers

人間と生成AIエージェントの協働によるものづくりDX機器人材育成の効率化の研究Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Monitoring Technologies on Structural Safety of Cultural Property Masonry Structures

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Deep learning-based layout design of urban roadside trees on the road network within digital twinsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Integration of plant strain SNPs using NGS Sequence Read Archive and diversity statistics analysisPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

The Development of a cloud computing-based annotation system for next-generation sequencing data

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Constructing morphological template models of Arabidopsis thaliana for computational mutant screeningPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

シロイヌナズナの葉面特異的分化器官の3次元形状計測と形質定量化Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

CG顔の構音に個人性を反映する身体形状パラメータの研究Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] 実験医学別冊 「次世代シークエンス解析スタンダード」2014

Author(s)

Total Pages

Publisher

Data Source

[Book] 実験医学別冊「次世代シークエンス解析スタンダード」:Ⅵ-4 DDBJ Read Annotation Pipeline 解析パイプラインによるRNA-Seq de novo assemblyとイネ多型解析2014

Author(s)

Publisher

Data Source

[Journal Article] DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data.2013

Author(s)

Journal Title

Data Source

[Journal Article] Quantitative analysis of heterogeneous spatial distribution of Arabidopsis leaf trichomes using micro X-ray computed tomography2008

Author(s)

Journal Title

Data Source

[Journal Article] Three-dimensional definition of leaf morphological traits of Arabidopsis in silico phenotypic analysis2005

Author(s)

Journal Title

Data Source

[Journal Article] In silico phenotypic screening method of mutants based on statistical modeling of genetically mixed samples2005

Author(s)

Journal Title

Data Source

[Journal Article] Automatic quantification of morphological traits via three-dimensional measurement of Arabidopsis2004

Kaminuma Eli 神沼英里

KAMINUMA Eli 神沼英里

山本英里ヤマモトエリ

[Book] 実験医学別冊　「次世代シークエンス解析スタンダード」2014