Kawaguchi Kazutomo 川口一朋

… Alternative Names

KAWAGUCHI Kazutomo 川口一朋

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Researcher Number	90402429
Other IDs
External Links
Affiliation (Current)	2023: 金沢大学, 数物科学系, 助教
Affiliation (based on the past Project Information) *help	2023: 金沢大学, 数物科学系, 助教 2017: 金沢大学, 理工研究域数物科学系, 助教 2012: 金沢大学, 数物科学系, 助教
Review Section/Research Field	Principal Investigator Basic Section 13040:Biophysics, chemical physics and soft matter physics-related Except Principal Investigator Biological physics/Chemical physics/Soft matter physics / Polymer chemistry
Keywords	Principal Investigator 自由エネルギー / 分子動力学シミュレーション / タンパク質複合体 / アミノ酸変異 Except Principal Investigator シトクロムb6/f / 酸化還元電位 / 光照射ストレス / 拡散過程 / シトクロムf / プラストシアニン … More / 会合解離過程 / 電子伝達体 / 光化学反応 / ミセル / 脂質 / 脂質ミセル / 高分子 / 自己組織化 / 分子動力学シミュレーション / 引き込み現象 Less

分子動力学計算によるアミノ酸変異タンパク質複合体の結合自由エネルギーシフトの予測Principal Investigator
- Principal Investigator
  
  川口一朋
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 13040:Biophysics, chemical physics and soft matter physics-related
- Research Institution
  Kanazawa University
Theoretical study on dynamics of electron carriers in photosynthesis stressed by light irradiation
- Principal Investigator
  
  Nagao Hidemi
- Project Period (FY)
  2014 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biological physics/Chemical physics/Soft matter physics
- Research Institution
  Kanazawa University
Theoretical studies on possibility of the entrainment in molecular systems
- Principal Investigator
  
  NAGAO Hidemi
- Project Period (FY)
  2011 – 2012
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Polymer chemistry
- Research Institution
  Kanazawa University

All 2018 2017 2016 2015 2014 2013 2012 Other

All Journal Article Presentation

[Journal Article] Theoretical studies on association/dissociation process of plastocyanin and cytochrome f in photosynthesis2018
- Author(s)
  Isman Kurniawan, Takahiro Matsui, Satoshi Nakagawa, Kazutomo Kawaguchi, Hidemi Nagao
- Journal Title
  
  Journal of Physics: Conference Series
  
  Volume: 印刷中
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26400429
[Journal Article] A coarse-grained model of the effective interaction for charged amino acid residues and its application to formation of GCN4-pLI tetramer2018
- Author(s)
  Kazutomo Kawaguchi, Satoshi Nakagawa, Isman Kurniawan, Koichi Kodama, Muhammad Saleh Arwansyah, Hidemi Nagao
- Journal Title
  
  Molecular Physics
  
  Volume: 印刷中
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26400429
[Journal Article] Molecular dynamics study of binary POPC bilayers: molecular condensing effects on membrane structure and dynamics2018
- Author(s)
  Hiroaki Saito, Tetsuya Morishita, Taku Mizukami, Ken-ichi Nishiyama, Kazutomo Kawaguchi, Hidemi Nagao
- Journal Title
  
  Journal of Physics: Conference Series
  
  Volume: 印刷中
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26400429
[Journal Article] Theoretical study on interaction of cytochrome f and plastocyanin complex by a simple coarse-grained model with molecular crowding effect2018
- Author(s)
  Satoshi Nakagawa, Isman Kurniawan, Koichi Kodama, Muhammad Saleh Arwansyah, Kazutomo Kawaguchi, Hidemi Nagao
- Journal Title
  
  Molecular Physics
  
  Volume: 印刷中
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26400429
[Journal Article] A simple coarse-grained model for interacting protein complex2017
- Author(s)
  Kazutomo Kawaguchi, Satoshi Nakagawa, Shogo Kinoshita, Makoto Wada, Hiroaki Saito, Hidemi Nagao
- Journal Title
  
  Molecular Physics
  
  Volume: 115 Issue: 5 Pages: 587-597
- DOI
  10.1080/00268976.2016.1234652
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-16K05648, KAKENHI-PROJECT-26400429
[Journal Article] Dual function of coronatine as a bacterial virulence factor against plants: possible COI1-JAZ- independent role2016
- Author(s)
  Syusuke Egoshi,Yousuke Takaoka, Hiroaki Saito, Yuuki Nukadzuka, Kengo Hayashi, Yasuhiro Ishimaru, Hiroyuki Yamakoshi, Kosuke Dodo, Mikiko Sodeoka and Minoru Ueda
- Journal Title
  
  RSC Adv.
  
  Volume: 6 Issue: 11 Pages: 19404-19412
- DOI
  10.1080/08927022.2015.1102249
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PUBLICLY-26102722, KAKENHI-PROJECT-26400429
[Journal Article] Decomposition analysis of free energy profile for Hsp90-ADP association2016
- Author(s)
  Kazutomo Kawaguchi, Hiroaki Saito, Hidemi Nagao
- Journal Title
  
  Molecular Simulation
  
  Volume: 未定
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26400429
[Journal Article] A hybrid-type approach with MD and DFT calculations for evaluation of redox potential of molecules2015
- Author(s)
  Masashi Iwayama, Isman Kurniawan , Kazutomo Kawaguchi , Hiroaki Saito and Hidemi Nagao
- Journal Title
  
  Molecular Simulation
  
  Volume: 41 Issue: 10-12 Pages: 936-941
- DOI
  10.1080/08927022.2015.1012641
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-26102722, KAKENHI-PROJECT-26400429
[Journal Article] Network of water molecules around guanine nucleotide in the Hras-GTP and -GDP complexes by MD simulations2014
- Author(s)
  Takeshi Miyakawa, Ryota Morikawa, Masako Takasu, Kimikazu Sugimori, Tomokazu Kawaguchi, Hiroaki Saito, Hidemi Nagao
- Journal Title
  
  JPS Conf. Proc.
  
  Volume: volume 1 Pages: 16006-16006
- DOI
  10.7566/jpscp.1.016006
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23750008, KAKENHI-PROJECT-24540442, KAKENHI-PROJECT-26400429
[Journal Article] Analysis of water molecules around GTP in Hras-GTP complex and GDP in Hras-GDP complex by molecular dynamics simulations2014
- Author(s)
  T.　Miyakawa
- Journal Title
  
  MOLECULAR PHYSICS
  
  Volume: 112 Issue: 3-4 Pages: 526-532
- DOI
  10.1080/00268976.2013.852697
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23350064, KAKENHI-PROJECT-23750008, KAKENHI-PROJECT-24540442, KAKENHI-PUBLICLY-26102722, KAKENHI-PROJECT-26400429
[Journal Article] Molecular Dynamics Study of Hsp90 and ADP: Hydrogen Bond Analysis for ADP Dissociation2014
- Author(s)
  Kazutomo KAWAGUCHI, Hiroaki SAITO, Hidemi NAGAO
- Journal Title
  
  JPS Conf. Proc.
  
  Volume: volume 1 Pages: 012056-012056
- DOI
  10.7566/jpscp.1.012056
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23750008, KAKENHI-PROJECT-26400429
[Journal Article] Molecular Dynamics Study of Gramicidin A in Lipid Bilayer: Electrostatic Map and Ion Conduction2014
- Author(s)
  Hiroaki SAITO, Masashi IWAYAMA, Kazutomo KAWAGUCHI, Taku MIZUKAMI, Takeshi MIYAKAWA, Masako TAKASU, and Hidemi NAGAO
- Journal Title
  
  JPS Conf. Proc
  
  Volume: volume 1 Pages: 012053-012053
- DOI
  10.7566/jpscp.1.012053
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23750008, KAKENHI-PROJECT-25650050, KAKENHI-PROJECT-26400429
[Journal Article] Theoretical Study on Entrainment Phenomenon in Model Molecular Systems2013
- Author(s)
  H. Nagao, S. Kawamoto, M. Rusmerryani, A. Purqon, K. Kawaguchi, H. Saito
- Journal Title
  
  AIP Conference Proceedings
  
  Volume: 1518 Pages: 729-732
- DOI
  10.1063/1.4794669
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23655101, KAKENHI-PROJECT-23750008
[Journal Article] Molecular Dynamics Analyses of the Dissociation Process of ADP from Hsp902012
- Author(s)
  K. Kawaguchi, H. Takagi, M. Iwayama, M.Nishimura, T. Miyakawa, H. Saito, M. Takasu, H.Nagao
- Journal Title
  
  International Journal of Quantum Chemistry
  
  Volume: 112 Issue: 24 Pages: 3791-3795
- DOI
  10.1002/qua.24229
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23655101, KAKENHI-PROJECT-23750008
[Journal Article] Molecular Dynamics Study of Gramicidin A in Lipid Bilayer: Structure and Lateral Pressure Profile2012
- Author(s)
  H. Saito, M. Iwayama, H. Takagi, M. Nishimura, T. Miyakawa, K. Kawaguchi, M. Takasu, T. Mizukami, H. Nagao
- Journal Title
  
  International Journal of Quantum Chemistry
  
  Volume: 112 Issue: 24 Pages: 3834-3839
- DOI
  10.1002/qua.24248
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23655101, KAKENHI-PROJECT-23750008
[Presentation] Theoretical study of a coarse-grained model for folding and association of a protein complex2018
- Author(s)
  Kazutomo Kawaguchi, Satoshi Nakagawa, Hidemi Nagao
- Organizer
  The 58th Sanibel Symposium
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Langevin 動力学を用いたチラコイドルーメン内腔のプラストシアニンの拡散現象に関する理論的研究2017
- Author(s)
  和田慎、高木晶平、中川聖、川口一朋、長尾秀実
- Organizer
  第31 回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical study of diffusion of plastocyanin with Langevin dynamics simulation2017
- Author(s)
  Makoto Wada, Satoshi Nakagawa, Kazutomo Kawaguchi, Hidemi Nagao
- Organizer
  International Symposium on Computational Science 2017
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical Studies on Stability and Dynamics of Protein by a Coarse-grained Model2017
- Author(s)
  Satoshi Nakagawa, Kazutomo Kawaguchi, Isman Kurniawan, Arwansyah Saleh, Koichi Kodama, Hidemi Nagao
- Organizer
  XXIX IUPAP Conference on Computational Physics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Development of a coarse-grained model for charged amino acid residues2017
- Author(s)
  K. Kawaguchi, S. Nakagawa, H. Nagao
- Organizer
  第55回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] The Free Energy Profile for Dissociation of Ligand from Zn2+ Ion of CA I Activesite2017
- Author(s)
  Arwansyah Muhammad Saleh, Isman Kurniawan, Kazutomo Kawaguchi, Hidemi Nagao
- Organizer
  第55回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical study on intermolecular interaction and structural stability of plastcyanin and cytochrom f complex by using Go-like model2017
- Author(s)
  S. Nakagawa, S. Kinoshita, K. Kawaguchi, H. Nagao
- Organizer
  The 57th Sanibel Symposium
- Place of Presentation
  St. Simons Island, USA
- Year and Date
  2017-02-19
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Goldman-Hodgkin-Katz 方程式から得られる静止膜電位の分子動力学シミュレーション2017
- Author(s)
  川口一朋、長尾秀実
- Organizer
  第31 回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical Study of RA-VII as a Candidate for Anticancer Agent: Combination of Docking and Molecular Dynamics Simulation2017
- Author(s)
  M.S. Arwansyah, I. Kurniawan, Y. Noguchi, K. Kawaguchi, T. Miyakawa, Y. Hitotsuyanagi, S. Yokojima, R. Morikawa, M. Takasu, and H. Nagao
- Organizer
  International Symposium on Computational Science 2017
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical study on the structural stability of vesicle consisting of mixed lipids by coarse-grained model2017
- Author(s)
  Tetsu Matsuura, Shohei Takagi, Kazutomo Kawaguchi, Hidemi Nagao
- Organizer
  第55回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical study of a coarse grained model of electrostatic interaction between protein molecules2017
- Author(s)
  K. Kawaguchi, S. Nakagawa, I. Kurniawan, K. Kodama, M. Wada, H. Nagao
- Organizer
  The 57th Sanibel Symposium
- Place of Presentation
  St. Simons Island, USA
- Year and Date
  2017-02-19
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] The Exit Pathways of Water Molecule from Tri-Nuclear Copper Center of Multicopper Oxidase: A Steered Molecular Dynamics Study2017
- Author(s)
  I. Kurniawan, K. Kawaguchi, T. Sakurai, and H. Nagao
- Organizer
  International Symposium on Computational Science 2017
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical studies on dynamics of electron carriers in photosynthesis2017
- Author(s)
  Hidemi Nagao, Satoshi Nakagawa, Isman Kurniawan, Koichi Kodama, Muhammad Arwansyah, Kazutomo Kawaguchi
- Organizer
  第55回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical study on contribution of screened electrostatic intermolecular interaction to reaction process of Plastocyanin and Cytochrome f2017
- Author(s)
  Satoshi Nakagawa, Kazutomo Kawaguchi, Hidemi Nagao
- Organizer
  International Symposium on Computational Science 2017
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical Study on Contribution of Long-Range Interaction to Electronic Structure of Type I Copper Center in Multicopper Oxidase2017
- Author(s)
  Isman Kurniawan, Koichi Kodama1, Makoto Wada1, Satoshi Nakagawa, Kimikazu Sugimori, Kazutomo Kawaguchi, Takeshi Sakurai, Hidemi Nagao
- Organizer
  第31 回分子シミュレーション討論会
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical Studies on Dynamics of Electron Carriers in Photosynthesis by a Coarse-grained Model2017
- Author(s)
  Satoshi Nakagawa, Kazutomo Kawaguchi, Isman Kurniawan, Arwnsyah Saleh, Koichi Kodama, Hidemi Nagao
- Organizer
  19th International Union for Pure and Applied Biophysics Congress, 11th European Biophysics Congress
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical study of diffusion of plastocyanin with Langevin equation2016
- Author(s)
  M. Wada, S. Nakagawa, S. Kinoshita, I. Kurniawan, K. Kodama, K. Kawaguchi, H. Nagao
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場（つくば）
- Year and Date
  2016-11-25
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical Study of a Coarse-grained Potential of Hydrophobic Interaction between Protein Molecules” (poster) International Symposium on Multi-scale Simulation of Condensed-phase Reacting Systems2016
- Author(s)
  K. Kawaguchi, H. Nagao
- Organizer
  MSCRS2016
- Place of Presentation
  Nagoya, Japan
- Year and Date
  2016-10-10
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical study of a conformational change in Hsp902016
- Author(s)
  K. Kawaguchi, H. Nagao
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場（つくば）
- Year and Date
  2016-11-25
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Hras-GTP/GDP系でのGTP/GDP周辺における水素結合の静的性質と動的性質の分子動力学法による研究2016
- Author(s)
  宮川毅、森河良太、高須昌子、杉森公一、川口一朋、長尾秀実
- Organizer
  日本物理学会2016年秋季大会
- Place of Presentation
  金沢大学角間キャンパス（金沢）
- Year and Date
  2016-09-13
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical study on the process of the formation of lipid molecule cluster by coarse-grained model2016
- Author(s)
  S. Kinoshita, S. Nakagawa, M. Wada, S. Ito, K. Kawaguchi, H. Nagao
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場（つくば）
- Year and Date
  2016-11-25
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] 疎水性アミノ酸残基間に働く有効相互作用に関する理論的研究2016
- Author(s)
  川口一朋、齋藤大明、長尾秀実
- Organizer
  日本物理学会第71回年次大会
- Place of Presentation
  東北学院大学　仙台
- Year and Date
  2016-03-19
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] POPC の膜電位に関する理論的研究2016
- Author(s)
  伊藤誠一朗、川口一朋、長尾秀実
- Organizer
  第30回分子シミュレーション討論会
- Place of Presentation
  大阪大学基礎工学国際棟シグマホール（大阪）
- Year and Date
  2016-11-30
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] タンパク質間相互作用の粗視化モデルに関する理論的研究2016
- Author(s)
  川口一朋、長尾秀実
- Organizer
  第10回分子科学討論会
- Place of Presentation
  神戸ファッションマート（神戸）
- Year and Date
  2016-09-13
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] 水溶液中のタンパク質間静電相互作用の粗視化モデル2016
- Author(s)
  川口一朋、長尾秀実
- Organizer
  第30回分子シミュレーション討論会
- Place of Presentation
  大阪大学基礎工学国際棟シグマホール（大阪）
- Year and Date
  2016-11-30
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Analysis of dynamics of hydrogen bond between the solvent water and the Hras-GTP/GDP complexes by molecular dynamics simulations2016
- Author(s)
  T. Miyakawa, R. Morikawa, M. Takasu, K. Sugimori, K. Kawaguchi, H. Nagao
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場（つくば）
- Year and Date
  2016-11-25
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Theoretical study on the structural stability of plastocyanin and cytochrome f complex by using Go-like model2016
- Author(s)
  S. Nakagawa, S. Kinoshita, M. Wada, K. Kawaguchi, H. Nagao
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場（つくば）
- Year and Date
  2016-11-25
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] プラストシアニンとシトクロムfの会合―解離過程における自由エネルギー地形に関する理論的研究2015
- Author(s)
  松井貴寛、中川聖、川口一朋、齋藤大明、長尾秀実
- Organizer
  第9回分子科学討論会
- Place of Presentation
  東京工業大学　東京
- Year and Date
  2015-09-16
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Goモデルを用いたプラストシアニン―シトクロムfにおけるタンパク質間相互作用に関する理論的研究2015
- Author(s)
  中川聖、木下翔吾、松井貴寛、川口一朋、齋藤大明、長尾秀実
- Organizer
  第9回分子科学討論会
- Place of Presentation
  東京工業大学　東京
- Year and Date
  2015-09-16
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Role of water molecules for association of Hsp90 and ADP2015
- Author(s)
  Kazutomo Kawaguchi, Hiroaki Saito, Hidemi Nagao
- Organizer
  第53回日本生物物理学会年会
- Place of Presentation
  金沢大学　金沢
- Year and Date
  2015-09-13
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] 水溶液中の溶質分子の親水性・疎水性に関する理論的研究2015
- Author(s)
  川口一朋、齋藤大明、長尾秀実
- Organizer
  第9回分子科学討論会
- Place of Presentation
  東京工業大学　東京
- Year and Date
  2015-09-16
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Molecular dynamics analyses of dissociation process of ADP from Hsp902013
- Author(s)
  K. Kawaguchi, H. Takagi, M. Iwayama, H. Saito, H. Nagao
- Organizer
  International Symposium On Computational Science 2013(招待講演
- Place of Presentation
  Kanazawa
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Theoretical studies on oxidation of molecules by combining MD and QM/MM calculations2013
- Author(s)
  Masashi Iwayama, Isman Kurniawan, Kazutomo Kawaguchi, Hiroaki Saito, Hidemi Nagao
- Organizer
  The 53rd Sanibel Symposium
- Place of Presentation
  Florida, USA
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Molecular dynamics analyses of dissociation process of ADP from Hsp902013
- Author(s)
  K. Kawaguchi, H. Takagi, M. Iwayama, H. Saito, H. Nagao
- Organizer
  International Symposium On Computational Science 2013
- Place of Presentation
  Kanazawa
- Invited
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Hras-GTP内におけるGTP周辺にある水分子の分子動力学法による研究2013
- Author(s)
  宮川毅, 森河良太, 高須昌子, 杉森公一, 川口一朋, 齋藤大明, 長尾秀実
- Organizer
  第68回日本物理学会春季大会
- Place of Presentation
  広島
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Binding Free Energy of Azurin-Cytochrome c551 Complex by all-atom Molecular DynamicsSimulation2012
- Author(s)
  H. Saito, M. Iwayama, T. Mizukami, K.Kawaguchi, Hidemi Nagao
- Organizer
  Conference on Computational Physics (CCP2012)
- Place of Presentation
  Kobe
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Free energy profile for binding of ADP to Hsp90 with molecular dynamics simulation2012
- Author(s)
  K. Kawaguchi, H. Takagi, M. Iwayama, M. Nishimura, H. Saito, Hidemi Nagao
- Organizer
  第50回日本生物物理学会年会
- Place of Presentation
  名古屋
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Molecular dynamics study of gramicidin A in lipid bilayer: structure and lateral pressure profile2012
- Author(s)
  Hiroaki Saito, Masashi Iwayama, Hiroyuki Takagi,Kazutomo Kawaguchi, and Hidemi Nagao
- Organizer
  The 5th International Symposium on Computational Sciences(ISCS) 2012(招待講演
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Free energy profile for binding of ADP to Hsp90 by molecular dynamics simulation2012
- Author(s)
  Kazutomo Kawaguchi, Hiroyuki Takagi, Masashi Iwayama, Hiroaki Saito, and Hidemi Nagao
- Organizer
  The 5th International Symposium on Computational Sciences (ISCS) 2012
- Place of Presentation
  Yogyakarta, Indonesia
- Invited
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Structure and lateral pressure profile of lipid bilayer containing gramicidin A by molecular dynamics simulation2012
- Author(s)
  H. Saito, M. Iwayama, M. Nishimura, H. Takagi, K. Kawaguchi, H. Nagao
- Organizer
  第50回日本生物物理学会年会
- Place of Presentation
  名古屋
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Binding Free Energy of Azurin-Cytochrome c551 Complex by all-atom Molecular Dynamics Simulation2012
- Author(s)
  H. Saito, M. Iwayama, T. Mizukami, K. Kawaguchi, Hidemi Nagao
- Organizer
  Conference on Computational Physics (CCP2012)
- Place of Presentation
  Kobe
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Free energy profile for binding of ADP to Hsp90 by molecular dynamics simulation2012
- Author(s)
  Kazutomo Kawaguchi, Hiroyuki Takagi, Masashi Iwayama, Hiroaki Saito, and Hidemi Nagao
- Organizer
  The 5th International Symposium on Computational Sciences(ISCS) 2012(招待講演)
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Molecular dynamics study of gramicidin A in lipid bilayer: structure and lateral pressure profile2012
- Author(s)
  Hiroaki Saito, Masashi Iwayama, Hiroyuki Takagi, Kazutomo Kawaguchi, and Hidemi Nagao
- Organizer
  The 5th International Symposium on Computational Sciences (ISCS) 2012
- Place of Presentation
  Yogyakarta, Indonesia
- Invited
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Theoretical study on entrainment phenomenon in model molecular systems2012
- Author(s)
  Hidemi Nagao, Michke Rusmerryani, Acep Pruqon, Kazutomo Kawaguchi, Hiroaki Saito
- Organizer
  The 4th International Symposium on Slow Dynamics in Complex Systems
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Structure and lateral pressure profile of lipid bilayer containing gramicidin A by molecular dynamicssimulation2012
- Author(s)
  H. Saito, M. Iwayama, M. Nishimura, H. Takagi,K. Kawaguchi, H. Nagao
- Organizer
  第50回日本生物物理学会年会
- Place of Presentation
  名古屋
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Theoretical study on entrainment phenomenon in model molecular systems2012
- Author(s)
  Hidemi Nagao, Michke Rusmerryani, Acep Pruqon, Kazutomo Kawaguchi, Hiroaki Saito
- Organizer
  The 4th International Symposium on Slow Dynamics in Complex Systems
- Place of Presentation
  Sendai
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Free energy profile of Hsp90-ADP binding by molecular dynamics simulations2012
- Author(s)
  K. Kawaguchi, H. Saito, Hidemi Nagao
- Organizer
  Conference on Computational Physics (CCP2012)
- Place of Presentation
  Kobe
- Data Source
  KAKENHI-PROJECT-23655101
[Presentation] Theoretical study of distribution of ADP in binding pocket of Hsp90
- Author(s)
  Kazutomo Kawaguchi, Hiroaki Saito, Hidemi Nagao
- Organizer
  第５２回日本生物物理学会年会
- Place of Presentation
  札幌
- Year and Date
  2014-09-25 – 2014-09-26
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] Hras-GTP の GTP 周辺での溶媒水と複合体の水素結合の分子動力学法による研究
- Author(s)
  宮川毅, 森河良太, 高須昌子, 杉森公一, 川口一朋, 齋藤大明, 長尾秀実
- Organizer
  日本物理学会2014年秋季大会
- Place of Presentation
  中部大学
- Year and Date
  2014-09-07 – 2014-09-11
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] MD法とQM/MM計算によるブルー銅タンパク質の酸化還元電位に関する理論的研究
- Author(s)
  岩山将士，齋藤大明，川口一朋，長尾秀実
- Organizer
  第８回分子科学討論会
- Place of Presentation
  東広島
- Year and Date
  2014-09-21 – 2014-09-24
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] フレキシブルモデルを用いた分子ドッキング法の開発
- Author(s)
  齋藤大明，川口一朋，長尾秀実
- Organizer
  第８回分子科学討論会
- Place of Presentation
  東広島
- Year and Date
  2014-09-21 – 2014-09-24
- Data Source
  KAKENHI-PROJECT-26400429
[Presentation] タンパク質間の解離過程における自由エネルギー地形に関する理論的研究
- Author(s)
  松井貴寛, 齋藤大明, 川口一朋, 長尾秀実
- Organizer
  第８回分子科学討論会
- Place of Presentation
  東広島
- Year and Date
  2014-09-21 – 2014-09-24
- Data Source
  KAKENHI-PROJECT-26400429

1. NAGAO Hidemi (30291892)

# of Collaborated Projects: 2 results

# of Collaborated Products: 60 results
2. SAITO Hiroaki (40506820)

# of Collaborated Projects: 2 results

# of Collaborated Products: 37 results
3. NAGAYAMA Masaharu (20314289)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. IWASAKI Hiroshi (30242514)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. NAKAGAWA Satoshi

# of Collaborated Projects: 1 results

# of Collaborated Products: 19 results
6. KODAMA Koichi

# of Collaborated Projects: 1 results

# of Collaborated Products: 8 results
7. Kurniawan Isman

# of Collaborated Projects: 1 results

# of Collaborated Products: 12 results
8. Saleh Arwansyah

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results

Kawaguchi Kazutomo 川口 一朋

KAWAGUCHI Kazutomo 川口 一朋

Research Projects

Research Products

Co-Researchers

分子動力学計算によるアミノ酸変異タンパク質複合体の結合自由エネルギーシフトの予測Principal Investigator

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Review Section

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Theoretical study on dynamics of electron carriers in photosynthesis stressed by light irradiation

Principal Investigator

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Research Institution

Theoretical studies on possibility of the entrainment in molecular systems

Principal Investigator

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[Journal Article] Theoretical studies on association/dissociation process of plastocyanin and cytochrome f in photosynthesis2018

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[Journal Article] A coarse-grained model of the effective interaction for charged amino acid residues and its application to formation of GCN4-pLI tetramer2018

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[Journal Article] Molecular dynamics study of binary POPC bilayers: molecular condensing effects on membrane structure and dynamics2018

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[Journal Article] Theoretical study on interaction of cytochrome f and plastocyanin complex by a simple coarse-grained model with molecular crowding effect2018

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[Journal Article] A simple coarse-grained model for interacting protein complex2017

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[Journal Article] Dual function of coronatine as a bacterial virulence factor against plants: possible COI1-JAZ- independent role2016

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[Journal Article] Decomposition analysis of free energy profile for Hsp90-ADP association2016

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[Journal Article] A hybrid-type approach with MD and DFT calculations for evaluation of redox potential of molecules2015

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[Journal Article] Network of water molecules around guanine nucleotide in the Hras-GTP and -GDP complexes by MD simulations2014

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[Journal Article] Analysis of water molecules around GTP in Hras-GTP complex and GDP in Hras-GDP complex by molecular dynamics simulations2014

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[Journal Article] Molecular Dynamics Study of Hsp90 and ADP: Hydrogen Bond Analysis for ADP Dissociation2014

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[Journal Article] Molecular Dynamics Study of Gramicidin A in Lipid Bilayer: Electrostatic Map and Ion Conduction2014

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[Journal Article] Theoretical Study on Entrainment Phenomenon in Model Molecular Systems2013

Author(s)

Kawaguchi Kazutomo 川口一朋

KAWAGUCHI Kazutomo 川口一朋