Sakata Katsumi 坂田克己

Researcher Number	90545419
Affiliation (based on the past Project Information) *help	2014 – 2019: 前橋工科大学, 工学部, 教授
Review Section/Research Field	Principal Investigator Life / Health / Medical informatics Except Principal Investigator Crop production science
Keywords	Principal Investigator システムバイオロジー / 生物ネットワーク / 状態空間モデル / 生命現象の物理 / 生命系ネットワーク / 環境変動と生命秩序 / ネットワークトポロジー Except Principal Investigator 湿害 / ダイズ / シミュレイション / オミクス

Induced orderliness in biological networksPrincipal Investigator
- Principal Investigator
  
  Sakata Katsumi
- Project Period (FY)
  2016 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Maebashi Institute of Technology
Development of flooding-tolerant soybean using omics-integration simulation based technology
- Principal Investigator
  
  KOMATSU Setsuko
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Crop production science
- Research Institution
  University of Tsukuba
  National Agriculture and Food Research Organization
Study of reprograming mechanism in general networksPrincipal Investigator
- Principal Investigator
  
  Sakata Katsumi
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Maebashi Institute of Technology

All 2020 2019 2018 2017 2016 2015 Other

All Journal Article Presentation

[Journal Article] An Information-Theoretic Model for Managing Predator-Prey Ecosystems Facing Climate Changes2020
- Author(s)
  Katsumi Sakata, Ramesh Katam, Toshiyuki Saito, Hajime Ohyanagi, Setsuko Komatsu
- Journal Title
  
  International Journal on Advances in Life Sciences
  
  Volume: 12
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00399
[Journal Article] An Integrated Approach of Proteomics and Computational Genetic Modification Effectiveness Analysis to Uncover the Mechanisms of Flood Tolerance in Soybeans2018
- Author(s)
  Wang Xin、Sakata Katsumi、Komatsu Setsuko
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 19 Issue: 5 Pages: 1301-1301
- DOI
  10.3390/ijms19051301
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00399
[Journal Article] Integration of gel-based and gel-free proteomic data for functional analysis of proteins through Soybean Proteome Database2017
- Author(s)
  Komatsu Setsuko、Wang Xin、Yin Xiaojian、Nanjo Yohei、Ohyanagi Hajime、Sakata Katsumi
- Journal Title
  
  J. Proteomics
  
  Volume: 163 Pages: 52-66
- DOI
  10.1016/j.jprot.2017.05.009
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15H04445
[Journal Article] Loss of variation of state detected in soybean metabolic and human myelomonocytic leukaemia cell transcriptional networks under external stimuli2016
- Author(s)
  坂田他
- Journal Title
  
  Scientific Reports
  
  Volume: 6 Issue: 1 Pages: 35946-35946
- DOI
  10.1038/srep35946
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26540157, KAKENHI-PROJECT-16K00399, KAKENHI-PROJECT-15H04445
[Journal Article] Gel-free/label-free proteomic analysis of root tip of soybean over time under flooding and drought stresses.2016
- Author(s)
  Wang X, Oh M, Sakata K, Komatsu S.
- Journal Title
  
  J Proteomics
  
  Volume: 130 Pages: 42-55
- DOI
  10.1016/j.jprot.2015.09.007
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04445
[Journal Article] Proteomic analysis of flooded soybean root2015
- Author(s)
  Mustafa G, Sakata K, Komatsu S.
- Journal Title
  
  J Proteomics
  
  Volume: 128 Pages: 280-297
- DOI
  10.1016/j.jprot.2015.08.010
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04445
[Journal Article] System-wide analysis of the transcriptional network of human myelomonocytic leukemia cells predicts attractor structure and phorbol-ester-induced differentiation and dedifferentiation transitions2015
- Author(s)
  Katsumi Sakata, Hajime Ohyanagi, Toshiyuki Saito, et al.
- Journal Title
  
  Scientific Reports
  
  Volume: 5 Issue: 1 Pages: 8283-8283
- DOI
  10.1038/srep08283
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26540157, KAKENHI-PROJECT-26293303
[Presentation] Mathematical Formulation of Environmental Responses of Life Systems2020
- Author(s)
  Katsumi Sakata, Ramesh Katam
- Organizer
  International Conferences on STEM/STEAM and Education
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00399
[Presentation] 気候変動下の捕食者-被食者生態系の数理モデル構築とシミュレーション2019
- Author(s)
  坂田克己
- Organizer
  日本応用数理学会 2019年研究部会連合発表会
- Data Source
  KAKENHI-PROJECT-16K00399
[Presentation] A mathematical model for predator-prey ecosystems facing climate changes2019
- Author(s)
  Katsumi Sakata, Toshiyuki Saito, Hajime Ohyanagi, Setsuko Komatsu
- Organizer
  11th International Conference on Bioinformatics, Biocomputational Systems and Biotechnologies
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00399
[Presentation] Soybean Proteomics to Reveal the Flooding-Tolerant Mechanism2018
- Author(s)
  Setsuko Komatsu, Katsumi Sakata
- Organizer
  植物動物ゲノム会議XXNI, サンデイゴ（米国）
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04445
[Presentation] ヒト転写とダイズ代謝反応の外部刺激に対する応答－デジタル物理学的モデルによる一般化2018
- Author(s)
  坂田克己、大柳一、齋藤俊行、小松節子
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16K00399
[Presentation] Information flow analysis of genetic regulatory systems2018
- Author(s)
  Sakata K, Saito T, Ohyanagi H, Asahi S, Sato D, Morikawa Y, Komatsu S
- Organizer
  2018 SIAM Annual Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00399
[Presentation] 生物相互作用ネットワークの動特性解析2017
- Author(s)
  坂田克己, 新堀航大, 大柳一, 朝日頌, 佐藤大輝, 森川雄太, 齋藤俊行
- Organizer
  日本応用数理学会 2017年度年会
- Data Source
  KAKENHI-PROJECT-16K00399
[Presentation] Information Transfer-Model Interprets Loss of Control Capability in Biological Systems under External Stimuli2017
- Author(s)
  K. Sakata, H. Ohyanagi, T. Saito
- Organizer
  The IV International AMMCS Interdisciplinary Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00399
[Presentation] A Stability Analysis of the Biological Networks, Transcriptional Network, Neural Circuit and Ecosystem2016
- Author(s)
  Katsumi Sakata
- Organizer
  2016 SIAM Annual Meeting SIAM Conference on the Life Sciences
- Place of Presentation
  Boston, MA, USA
- Year and Date
  2016-07-11
- Data Source
  KAKENHI-PROJECT-26540157
[Presentation] 生命系ネットワークの安定性に関する解析研究2016
- Author(s)
  山下祥平，藤枝舜祐，坂田克己
- Organizer
  情報処理学会、第78回全国大会
- Place of Presentation
  慶應義塾大学矢上キャンパス
- Year and Date
  2016-03-10
- Data Source
  KAKENHI-PROJECT-26540157
[Presentation] A stability analysis of the biological networks, transcriptional network, neural circuit and ecosystem2016
- Author(s)
  坂田克己
- Organizer
  SIAM Conferences on the Life Sciences
- Place of Presentation
  ボストン（米国）
- Year and Date
  2016-07-11
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26540157
[Presentation] A stability analysis of the biological networks, transcriptional network, neural circuit and ecosystem2016
- Author(s)
  坂田克己
- Organizer
  SIAM Conferences on the Life Sciences
- Place of Presentation
  ボストン（米国）
- Year and Date
  2016-07-11
- Data Source
  KAKENHI-PROJECT-16K00399
[Presentation] Temporal analysis of flooded soybean root exposed to silver nanoparticles using proteomic technique.2015
- Author(s)
  Ghazala MUSTAFA, Katsumi SAKATA, Setsuko KOMATSU
- Organizer
  第３８回日本分子生物学会年会・第８８回日本生化学会大会合同大会
- Place of Presentation
  神戸ポートアイランド、神戸
- Year and Date
  2015-12-01
- Data Source
  KAKENHI-PROJECT-15H04445
[Presentation] 汎生物ネットワーク的な動特性の解析
- Author(s)
  坂田克己, 大柳一, 齋藤俊行
- Organizer
  日本応用数理学会2015年研究部会連合発表会
- Place of Presentation
  明治大学中野キャンパス
- Year and Date
  2015-03-06 – 2015-03-07
- Data Source
  KAKENHI-PROJECT-26540157

1. KOMATSU Setsuko (90355751)

# of Collaborated Projects: 2 results

# of Collaborated Products: 5 results
2. SAITO Toshiyuki (90205667)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. OHYANAGI Hajime

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
4. OKUMURA Jun

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. ISHIGE Kentaro

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. YAMASHITA Shohei

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
7. FUJIEDA Shunsuke

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
8. HIDAKA Takumi

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. Ramesh Katam

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 斉藤俊行

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results

Sakata Katsumi 坂田 克己

Research Projects

Research Products

Co-Researchers

Induced orderliness in biological networksPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Development of flooding-tolerant soybean using omics-integration simulation based technology

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Study of reprograming mechanism in general networksPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] An Information-Theoretic Model for Managing Predator-Prey Ecosystems Facing Climate Changes2020

Author(s)

Journal Title

Data Source

[Journal Article] An Integrated Approach of Proteomics and Computational Genetic Modification Effectiveness Analysis to Uncover the Mechanisms of Flood Tolerance in Soybeans2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Integration of gel-based and gel-free proteomic data for functional analysis of proteins through Soybean Proteome Database2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Loss of variation of state detected in soybean metabolic and human myelomonocytic leukaemia cell transcriptional networks under external stimuli2016

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Gel-free/label-free proteomic analysis of root tip of soybean over time under flooding and drought stresses.2016

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Proteomic analysis of flooded soybean root2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] System-wide analysis of the transcriptional network of human myelomonocytic leukemia cells predicts attractor structure and phorbol-ester-induced differentiation and dedifferentiation transitions2015

Author(s)

Journal Title

DOI

Data Source

[Presentation] Mathematical Formulation of Environmental Responses of Life Systems2020

Author(s)

Organizer

Data Source

[Presentation] 気候変動下の捕食者-被食者生態系の数理モデル構築とシミュレーション2019

Author(s)

Organizer

Data Source

[Presentation] A mathematical model for predator-prey ecosystems facing climate changes2019

Author(s)

Organizer

Data Source

[Presentation] Soybean Proteomics to Reveal the Flooding-Tolerant Mechanism2018

Author(s)

Organizer

Data Source

[Presentation] ヒト転写とダイズ代謝反応の外部刺激に対する応答－デジタル物理学的モデルによる一般化2018

Author(s)

Organizer

Data Source

[Presentation] Information flow analysis of genetic regulatory systems2018

Author(s)

Organizer

Data Source

Sakata Katsumi 坂田克己