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Nishimura Yosuke  西村 陽介

Researcher Number 90718959
Other IDs
  • ORCIDhttps://orcid.org/0000-0002-8028-3228
Affiliation (Current) 2026: 国立研究開発法人海洋研究開発機構, 生命地球科学研究部門(海洋バイオリソース展開・応用研究プログラム), 研究員
Affiliation (based on the past Project Information) *help 2024 – 2025: 国立研究開発法人海洋研究開発機構, 海洋機能利用部門(生命理工学センター), 研究員
2022 – 2023: 国立研究開発法人海洋研究開発機構, 海洋機能利用部門(生命理工学センター), 特任研究員
Review Section/Research Field
Principal Investigator
Transformative Research Areas, Section (II) / Transformative Research Areas, Section (IV) / Basic Section 43060:System genome science-related
Except Principal Investigator
Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
Keywords
Principal Investigator
環境微生物 / バイオインフォマティクス / メタゲノム / データベース / 微生物進化 / メタトランスクリプトーム / ゲノム解析 / ウイルス / 微生物 / 遺伝子系統 / 遺伝子系統樹 / オプトジェネティクス / ロドプシン … More
Except Principal Investigator
… More RNAレプリコン / ウイロイド / 環状RNA Less
  • Research Projects

    (4 results)
  • Research Products

    (19 results)
  • Co-Researchers

    (3 People)
  •  メタゲノムビッグデータで環境微生物が生み出した生合成ポテンシャルを理解するPrincipal Investigator

    • Principal Investigator
      西村 陽介
    • Project Period (FY)
      2025 – 2026
    • Research Category
      Grant-in-Aid for Transformative Research Areas (A)
    • Review Section
      Transformative Research Areas, Section (II)
    • Research Institution
      Japan Agency for Marine-Earth Science and Technology
  •  RNAプラスミド―伝染性の環状RNAを捉える―

    • Principal Investigator
      浦山 俊一
    • Project Period (FY)
      2025 – 2026
    • Research Category
      Grant-in-Aid for Challenging Research (Exploratory)
    • Review Section
      Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
    • Research Institution
      University of Tsukuba
  •  Development of a global rhodopsin information platform: toward the application and elucidation of Environmental Characteristics of Light UtilizationPrincipal Investigator

    • Principal Investigator
      Nishimura Yosuke
    • Project Period (FY)
      2022 – 2024
    • Research Category
      Grant-in-Aid for Early-Career Scientists
    • Review Section
      Basic Section 43060:System genome science-related
    • Research Institution
      Japan Agency for Marine-Earth Science and Technology
  •  ウイルスを捉えて生物圏機能を根底から理解する―革新的メタゲノム解析技術の開発―Principal Investigator

    • Principal Investigator
      西村 陽介
    • Project Period (FY)
      2022 – 2023
    • Research Category
      Grant-in-Aid for Transformative Research Areas (A)
    • Review Section
      Transformative Research Areas, Section (IV)
    • Research Institution
      Japan Agency for Marine-Earth Science and Technology

All 2024 2023 2022

All Journal Article Presentation

  • [Journal Article] Carotenoid pigments enhance rhodopsin-mediated phototrophy by light-harvesting and photocycle-accelerating2024

    • Author(s)
      Fujiwara Takayoshi、Hosaka Toshiaki、Hasegawa-Takano Masumi、Nishimura Yosuke、Tominaga Kento、Mori Kaho、Nishino Satoshi、Takahashi Yuno、Uchikubo-Kamo Tomomi、Hanada Kazuharu、Maoka Takashi、Takaichi Shinichi、Inoue Keiichi、Shirouzu Mikako、Yoshizawa Susumu
    • Journal Title

      bioRxiv

      Volume: 2024.11.08 Pages: 622755-622755

    • DOI

      10.1101/2024.11.08.622755

    • Open Access
    • Data Source
      KAKENHI-PROJECT-22K15089, KAKENHI-PROJECT-22KJ1110, KAKENHI-PROJECT-22KJ3197, KAKENHI-PROJECT-24K18202
  • [Journal Article] Draft genome sequences of three rhodopsin possessing <i>Croceitalea</i> sp. strains, isolated from the sea surface microlayer in Japan2024

    • Author(s)
      Takada Mako、Jiang Chunqi、Sugai Youta、Hasegawa-Takano Masumi、Fujiwara Takayoshi、Tsukamoto Yuya、Nakajima Yu、Nishimura Yosuke、Yoshizawa Susumu
    • Journal Title

      Microbiology Resource Announcements

      Volume: 13 Issue: 3

    • DOI

      10.1128/mra.00038-24

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K15089, KAKENHI-PROJECT-22KJ1110, KAKENHI-PROJECT-22KJ3197
  • [Journal Article] Double-stranded RNA sequencing reveals distinct riboviruses associated with thermoacidophilic bacteria from hot springs in Japan2024

    • Author(s)
      Urayama Syun-ichi、Fukudome Akihito、Hirai Miho、Okumura Tomoyo、Nishimura Yosuke、Takaki Yoshihiro、Kurosawa Norio、Koonin Eugene V.、Krupovic Mart、Nunoura Takuro
    • Journal Title

      Nature Microbiology

      Volume: 9 Issue: 2 Pages: 514-523

    • DOI

      10.1038/s41564-023-01579-5

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-22H04879, KAKENHI-PUBLICLY-22H05714, KAKENHI-PLANNED-19H05684
  • [Journal Article] Cyanorhodopsin-II represents a yellow-absorbing proton-pumping rhodopsin clade within cyanobacteria2024

    • Author(s)
      Hasegawa-Takano Masumi、Hosaka Toshiaki、Kojima Keiichi、Nishimura Yosuke、Kurihara Marie、Nakajima Yu、Ishizuka-Katsura Yoshiko、Kimura-Someya Tomomi、Shirouzu Mikako、Sudo Yuki、Yoshizawa Susumu
    • Journal Title

      The ISME Journal

      Volume: 18 Issue: 1

    • DOI

      10.1093/ismejo/wrae175

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K15089, KAKENHI-PROJECT-22KJ3197, KAKENHI-PROJECT-24K18202
  • [Journal Article] DiGAlign: Versatile and Interactive Visualization of Sequence Alignment for Comparative Genomics2024

    • Author(s)
      Nishimura Yosuke、Yamada Kohei、Okazaki Yusuke、Ogata Hiroyuki
    • Journal Title

      Microbes and Environments

      Volume: 39 Issue: 1 Pages: n/a

    • DOI

      10.1264/jsme2.ME23061

    • ISSN
      1342-6311, 1347-4405
    • Language
      English
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K15089, KAKENHI-PROJECT-22K15182, KAKENHI-PUBLICLY-22H05714, KAKENHI-PROJECT-22H00384
  • [Journal Article] Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities2024

    • Author(s)
      Charon J, Olendraite I, Forgia M, Chong LC, Hillary LS, Roux S, Kupczok A, Debat H, Sakaguchi S, Tahzima R, Nakagawa S, Babaian A, Abroi A, Bejerman N, Ben Mansour K, Brown K, Butkovic A, Cervera A, Charriat F, Chen G, Chiba Y, … Zrelovs N and Neri U
    • Journal Title

      Frontiers in Virology

      Volume: 4 Pages: 1371958-1371958

    • DOI

      10.3389/fviro.2024.1371958

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23KJ1995, KAKENHI-PUBLICLY-22H05714
  • [Journal Article] A blue-shifted anion channelrhodopsin from the Colpodellida alga Vitrella brassicaformis2023

    • Author(s)
      Kojima Keiichi、Kawanishi Shiho、Nishimura Yosuke、Hasegawa Masumi、Nakao Shin、Nagata Yuya、Yoshizawa Susumu、Sudo Yuki
    • Journal Title

      Scientific Reports

      Volume: 13 Issue: 1 Pages: 6974-6974

    • DOI

      10.1038/s41598-023-34125-8

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K15054, KAKENHI-PROJECT-22K15089, KAKENHI-PROJECT-22KJ3197, KAKENHI-PROJECT-21H02446
  • [Journal Article] Distribution and survival strategies of endemic and cosmopolitan diazotrophs in the Arctic Ocean2023

    • Author(s)
      Shiozaki Takuhei、Nishimura Yosuke、Yoshizawa Susumu、Takami Hideto、Hamasaki Koji、Fujiwara Amane、Nishino Shigeto、Harada Naomi
    • Journal Title

      The ISME Journal

      Volume: 17 Issue: 8 Pages: 1340-1350

    • DOI

      10.1038/s41396-023-01424-x

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K15089, KAKENHI-PUBLICLY-22H05714, KAKENHI-PROJECT-22H00557, KAKENHI-PROJECT-23H05411
  • [Journal Article] Light-driven Proton Pumps as a Potential Regulator for Carbon Fixation in Marine Diatoms2023

    • Author(s)
      Yoshizawa Susumu、Azuma Tomonori、Kojima Keiichi、Inomura Keisuke、Hasegawa Masumi、Nishimura Yosuke、Kikuchi Masuzu、Armin Gabrielle、Tsukamoto Yuya、Miyashita Hideaki、Ifuku Kentaro、Yamano Takashi、Marchetti Adrian、Fukuzawa Hideya、Sudo Yuki、Kamikawa Ryoma
    • Journal Title

      Microbes and Environments

      Volume: 38 Issue: 2 Pages: n/a

    • DOI

      10.1264/jsme2.ME23015

    • ISSN
      1342-6311, 1347-4405
    • Language
      English
    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22K15089, KAKENHI-PROJECT-22KJ3197, KAKENHI-PROJECT-21K19134, KAKENHI-PROJECT-21K19145, KAKENHI-PUBLICLY-21H05660, KAKENHI-PROJECT-19H03274, KAKENHI-PROJECT-21H02446
  • [Journal Article] Distinct groups of RNA viruses associated with thermoacidophilic bacteria2023

    • Author(s)
      Urayama Syun-ichi、Fukudome Akihito、Hirai Miho、Okumura Tomoyo、Nishimura Yosuke、Takaki Yoshihiro、Kurosawa Norio、Koonin Eugene V.、Krupovic Mart、Nunoura Takuro
    • Journal Title

      bioRxiv

      Volume: 2023.07.02 Pages: 547447-547447

    • DOI

      10.1101/2023.07.02.547447

    • Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-22H05714
  • [Journal Article] Distribution and survival strategies of diazotrophs in the Arctic Ocean revealed by global-scale metagenomic analysis2022

    • Author(s)
      Takuhei Shiozaki, Yosuke Nishimura, Susumu Yoshizawa, Hideto Takami, Koji Hamasaki, Amane Fujiwara, Shigeto Nishino, Naomi Harada
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2022.10.28.514325

    • Open Access
    • Data Source
      KAKENHI-PROJECT-22K15089, KAKENHI-PUBLICLY-22H05714
  • [Presentation] Antenna mechanism to chloride ion pumping rhodopsin from marine bacteria2024

    • Author(s)
      Takayoshi Fujiwara, Toshiaki Hosaka, Masumi Hasegawa-Takano, Yosuke Nishimura, Yuma Kawasaki, Keiichi Inoue, Mikako Shirouzu, Susumu Yoshizawa
    • Organizer
      19th International Symposium on Microbial Ecology
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22K15089
  • [Presentation] シアノロドプシンの発見が描き出すシアノバクテリアの光利用戦略2024

    • Author(s)
      長谷川 万純, 保坂 俊彰, 小島 慧一, 西村 陽介, 栗原 眞理恵, 中島 悠, 染谷 友美, 白水 美香子, 須藤 雄気, 吉澤 晋
    • Organizer
      藍藻の分子生物学2024
    • Data Source
      KAKENHI-PROJECT-22K15089
  • [Presentation] 海洋細菌が備えるロドプシンのイオン輸送加速色素2024

    • Author(s)
      藤原敬允, 長谷川万純, 西村陽介, 森香穂, 富永賢人, 西野聡, 高橋 優乃, 高市真一, 井上圭一, 吉澤晋
    • Organizer
      日本微生物生態学会第37回広島大会
    • Data Source
      KAKENHI-PROJECT-22K15089
  • [Presentation] 微生物型ロドプシンのイオン輸送加速色素の発見2024

    • Author(s)
      藤原敬允, 長谷川万純, 西村陽介, 森香穂, 高市真一, 井上圭一, 吉澤晋
    • Organizer
      第47回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-22K15089
  • [Presentation] RNAウイルスのゲノム複製を担う酵素RdRpの「特異な」進化2024

    • Author(s)
      Yuto Chiba, Yosuke Nishimura
    • Organizer
      第18回日本ゲノム微生物学会年会
    • Data Source
      KAKENHI-PUBLICLY-22H05714
  • [Presentation] How to report the divided RdRps2023

    • Author(s)
      Yuto Chiba, Yosuke Nishimura
    • Organizer
      The First RdRp Summit
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-22H05714
  • [Presentation] 公共メタゲノムデータで土壌微生物ダークマターに光を当てる2023

    • Author(s)
      西村陽介
    • Organizer
      第70回日本生態学会
    • Data Source
      KAKENHI-PUBLICLY-22H05714
  • [Presentation] 地球環境に棲まうウイルス「ダークマター」の実態を 公共メタゲノム・ビッグデータ解析で明らかにする2022

    • Author(s)
      西村陽介
    • Organizer
      第45回日本分子生物学会年会
    • Data Source
      KAKENHI-PUBLICLY-22H05714
  • 1.  浦山 俊一 (50736220)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 2.  松下 陽介 (00414665)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 3.  小島 慧一
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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