Sughiyama Yuki 杉山友規

Researcher Number	90756389
Other IDs
Affiliation (Current)	2026: 東北大学, 情報科学研究科, 特任准教授
Affiliation (based on the past Project Information) *help	2017 – 2019: 東京大学, 生産技術研究所, 特任助教 2016: 東京大学, 生産技術研究所, 特任研究員
Review Section/Research Field	Principal Investigator Mathematical physics/Fundamental condensed matter physics
Keywords	Principal Investigator 生物物理 / 熱力学 / 統計物理 / 数理生物学 / 機械学習 / 大偏差原理 / 確率過程論 / 進化生物学 / 非平衡統計物理学

Steady state thermodynamic structure for population dynamics and its applicationPrincipal Investigator
- Principal Investigator
  
  Sughiyama Yuki
- Project Period (FY)
  2016 – 2019
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Mathematical physics/Fundamental condensed matter physics
- Research Institution
  The University of Tokyo

All 2020 2019 2018 2017 2016

All Journal Article Presentation

[Journal Article] Lineage EM algorithm for inferring latent states from cellular lineage trees2020
- Author(s)
  Nakashima So、Sughiyama Yuki、Kobayashi Tetsuya J
- Journal Title
  
  Bioinformatics
  
  Volume: 36 Issue: 9 Pages: 2829-2838
- DOI
  10.1093/bioinformatics/btaa040
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K17763, KAKENHI-PROJECT-19H03216, KAKENHI-ORGANIZER-19H05794, KAKENHI-PLANNED-19H05799
[Journal Article] Fitness Gain of Individually Sensed Information by Cells2019
- Author(s)
  Kobayashi Tetsuya J.、Sughiyama Yuki
- Journal Title
  
  Entropy
  
  Volume: 21 Issue: 10 Pages: 1002-1002
- DOI
  10.3390/e21101002
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19H03216, KAKENHI-PROJECT-16K17763, KAKENHI-ORGANIZER-19H05794, KAKENHI-PLANNED-19H05799
[Journal Article] Fitness response relation of a multitype age-structured population dynamics2019
- Author(s)
  Sughiyama Yuki、Nakashima So、Kobayashi Tetsuya J.
- Journal Title
  
  Physical Review E
  
  Volume: 99 Issue: 1 Pages: 012413-012413
- DOI
  10.1103/physreve.99.012413
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K17763
[Journal Article] Quantum extension of variational Bayes inference2018
- Author(s)
  Miyahara Hideyuki、Sughiyama Yuki
- Journal Title
  
  Physical Review A
  
  Volume: 98 Issue: 2 Pages: 022330-022330
- DOI
  10.1103/physreva.98.022330
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K17763, KAKENHI-PROJECT-18J12175
[Journal Article] The explicit form of the rate function for semi-Markov processes and its contractions2018
- Author(s)
  Yuki Sughiyama, Testuya J. Kobayashi
- Journal Title
  
  Journal of Physics A: Mathematical and Theoretical
  
  Volume: 51 Issue: 12 Pages: 125001-125001
- DOI
  10.1088/1751-8121/aaab6d
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K17763, KAKENHI-PROJECT-16H06155
[Journal Article] Deciphering Latent Growth-States from Cellular Lineage Trees:2018
- Author(s)
  Nakashima So、Sughiyama Yuki、Kobayashi Tetsuya J.
- Journal Title
  
  bioRxiv
  
  Volume: N/A
- DOI
  10.1101/488981
- Data Source
  KAKENHI-PROJECT-16K17763
[Journal Article] Steady-state thermodynamics for population growth in fluctuating environments2017
- Author(s)
  Yuki Sughiyama and Tetsuya J. Kobayashi
- Journal Title
  
  PHYSICAL REVIEW E
  
  Volume: 95 Issue: 1 Pages: 012131-012131
- DOI
  10.1103/physreve.95.012131
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-16K17763
[Journal Article] Stochastic and information-thermodynamic structures of population dynamics in a fluctuating environment2017
- Author(s)
  Testuya J. Kobayashi, Yuki Sughiyama
- Journal Title
  
  Physical Review E
  
  Volume: 96 Issue: 1 Pages: 012402-012402
- DOI
  10.1103/physreve.96.012402
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K17763, KAKENHI-PROJECT-16H06155
[Presentation] Pathwise analysis for a structured population dynamics and its application to inference of cell states2019
- Author(s)
  Yuki Sughiyama, So Nakashima, Tetsuya J. Kobayashi
- Organizer
  The XXVII International Conference on Statistical Physics (Statphys27)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] A large deviation theory for an age-structured population dynamics and its application to inference of cell states2019
- Author(s)
  Yuki Sughiyama, So Nakashima, Tetsuya J. Kobayashi
- Organizer
  Nonlinear Dynamics, Scientific work of Prof. Dr Katica (Stevanovic) Hedrih
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] 時間遡及的見方による集団増殖率の解析2018
- Author(s)
  杉山友規
- Organizer
  第70回日本人口学会研究大会
- Invited
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] Semi-Markov過程上の大偏差関数とその増殖系への応用2018
- Author(s)
  杉山友規　小林徹也
- Organizer
  日本物理学会
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] Retrospective Approach for Age Structured Population Dynamics2018
- Author(s)
  Yuki Sughiyama
- Organizer
  The 12th AIMS Conference on Dynamical Systems, Differential Equations and Applications
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] Pathwise analysis for a multi-type age-structured population dynamics2018
- Author(s)
  Yuki Sughiyama
- Organizer
  Eurasian Health and Medicine 2018
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] Path-wise analysis for the age-structured population dynamics2017
- Author(s)
  Yuki Sughiyama
- Organizer
  Large Deviation Theory in Statistical Physics: Recent Advances and Future Challenges
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] 集団増殖系における SST 構造2017
- Author(s)
  杉山友規　小林徹也
- Organizer
  生命動態システム科学四拠点・CREST・PRESTO・理研QBiC 合同シンポジウム「生命動態の分子メカニズムと数理」
- Place of Presentation
  理研QBiC（大阪府）
- Year and Date
  2017-03-17
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] A retrospective analysis of the multi-state age-structured population dynamics2017
- Author(s)
  Yuki Sughiyama
- Organizer
  Ancestral lines in populations under selection
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] Age-structured population dynamics with type switching2017
- Author(s)
  Yuki Sughiyama
- Organizer
  Frontier in Quantitative Understanding of Dynamic Living States & its Applications
- Place of Presentation
  London(UK)
- Invited
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] Steady State Thermodynamic Structure in Population Dynamics2017
- Author(s)
  Yuki Sughiyama
- Organizer
  Physical approaches for growing & evolving populations
- Place of Presentation
  生産技術研究所（東京都）
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] age構造付き増殖過程の解析2017
- Author(s)
  杉山友規　小林徹也
- Organizer
  日本物理学会　2017年年次大会
- Place of Presentation
  大阪大学（大阪府）
- Year and Date
  2017-03-17
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] Steady State Thermodynamics in Population Dynamics2016
- Author(s)
  Yuki Sughiyama and Tetsuya J. Kobayashi
- Organizer
  International Conference on Systems Biology
- Place of Presentation
  Barcelona(Spain)
- Year and Date
  2016-09-16
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] Steady State Thermodynamics in Population Dynamics2016
- Author(s)
  杉山友規　小林徹也
- Organizer
  数理生物学会（JSMB2016）
- Place of Presentation
  九州大学（福岡県）
- Year and Date
  2016-09-07
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] Steady State Thermodynamics in Population Dynamics2016
- Author(s)
  Yuki Sughiyama and Tetsuya J. Kobayashi
- Organizer
  European Conference on Mathematical and Theoretical Biology (ECMTB) 2016
- Place of Presentation
  Nottingham(UK)
- Year and Date
  2016-07-11
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] Steady State Thermodynamics in Population Dynamics2016
- Author(s)
  Yuki Sughiyama and Tetsuya J. Kobayashi
- Organizer
  The XXVI International Conference on Statistical Physics (Statphys26)
- Place of Presentation
  Lyon(France)
- Year and Date
  2016-07-18
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K17763
[Presentation] Steady State Thermodynamics in Population Dynamics2016
- Author(s)
  Yuki Sughiyama and Tetsuya J. Kobayashi
- Organizer
  Information, Probability and Inference in System Biology 2016
- Place of Presentation
  Klosterneuburg(Austria)
- Year and Date
  2016-05-18
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K17763

1. KOBAYASHI Tetsuya

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Sughiyama Yuki 杉山 友規

Research Projects

Research Products

Co-Researchers

Steady state thermodynamic structure for population dynamics and its applicationPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Lineage EM algorithm for inferring latent states from cellular lineage trees2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Fitness Gain of Individually Sensed Information by Cells2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Fitness response relation of a multitype age-structured population dynamics2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Quantum extension of variational Bayes inference2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The explicit form of the rate function for semi-Markov processes and its contractions2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Deciphering Latent Growth-States from Cellular Lineage Trees:2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Steady-state thermodynamics for population growth in fluctuating environments2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Stochastic and information-thermodynamic structures of population dynamics in a fluctuating environment2017

Author(s)

Journal Title

DOI

Data Source

[Presentation] Pathwise analysis for a structured population dynamics and its application to inference of cell states2019

Author(s)

Organizer

Data Source

[Presentation] A large deviation theory for an age-structured population dynamics and its application to inference of cell states2019

Author(s)

Organizer

Data Source

[Presentation] 時間遡及的見方による集団増殖率の解析2018

Author(s)

Organizer

Data Source

[Presentation] Semi-Markov過程上の大偏差関数とその増殖系への応用2018

Author(s)

Organizer

Data Source

[Presentation] Retrospective Approach for Age Structured Population Dynamics2018

Author(s)

Organizer

Data Source

[Presentation] Pathwise analysis for a multi-type age-structured population dynamics2018

Author(s)

Organizer

Data Source

[Presentation] Path-wise analysis for the age-structured population dynamics2017

Author(s)

Organizer

Data Source

[Presentation] 集団増殖系における SST 構造2017

Author(s)

Sughiyama Yuki 杉山友規