Ota Yusuke 太田悠介

Researcher Number	90868530
Other IDs
Affiliation (Current)	2026: 東京科学大学, 大学院医歯学総合研究科, 助教
Affiliation (based on the past Project Information) *help	2026: 東京科学大学, 大学院医歯学総合研究科, 助教 2024: 東京科学大学, 大学院医歯学総合研究科, 助教 2020 – 2024: 東京医科歯科大学, 大学院医歯学総合研究科, 助教
Review Section/Research Field	Principal Investigator Basic Section 63040:Environmental impact assessment-related / Basic Section 52010:General internal medicine-related Except Principal Investigator Basic Section 58020:Hygiene and public health-related: including laboratory approach
Keywords	Principal Investigator 薬剤耐性 / メタゲノム解析 / GES型カルバペネマーゼ / 病院排水 / LC-MS/MS / メタトランスクリプトーム / メタゲノム / メタトランスクリプトーム解析 / ショットガンメタゲノム解析 / 16S rRNAアンプリコンシーケンス … More / オミクス解析 / Small colony variants / antimicrobial resistance / Small colony variant / Pseudomonas aeruginosa / Escherichia coli / バイオフィルム / カイコ / カイコ細菌感染モデル / 臨床微生物検査 / RNAシーケンス解析 / 全ゲノム解析 / 小型コロニー形成細菌 … More Except Principal Investigator 環境整備 / 集中治療室 / メタゲノム解析 / 医療関連感染 / 環境微生物叢 / 薬剤耐性 Less

病院排水中バイオフィルムの「薬剤耐性進化の温床」機能の解明とリスク評価基盤の構築Principal Investigator
- Principal Investigator
  
  太田悠介
- Project Period (FY)
  2026 – 2028
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 63040:Environmental impact assessment-related
- Research Institution
  Institute of Science Tokyo
Comprehensive evaluation of the distribution and characteristics of antimicrobial resistance in hospital wastewater using metagenomic dataPrincipal Investigator
- Principal Investigator
  
  太田悠介
- Project Period (FY)
  2024 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 63040:Environmental impact assessment-related
- Research Institution
  Institute of Science Tokyo
  Tokyo Medical and Dental University
Antimicrobial resistance dynamics using ultra-high precision metagenomics in medical facility environments and construction of environmental improvement measures
- Principal Investigator
  
  齋藤良一
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 58020:Hygiene and public health-related: including laboratory approach
- Research Institution
  Institute of Science Tokyo
Characterization of bacterial small-colony variants causing antimicrobial resistance using omics analysis and establishment of their microbiological assaysPrincipal Investigator
- Principal Investigator
  
  Ota Yusuke
- Project Period (FY)
  2020 – 2023
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 52010:General internal medicine-related
- Research Institution
  Tokyo Medical and Dental University

All 2025 2024 2023

All Journal Article Presentation

[Journal Article] Emergence of Carbapenem-Resistant blaPOM-1 Harboring Pseudomonas otitidis Isolated from River Water in Ghana2025
- Author(s)
  Ofosu Appiah F, Mahazu S, Prah I, Kawamura T, Ota Y, Nishikawa Y, Yoshida M, Suzuki M, Hoshino Y, Suzuki T, Ishino T, Ablordey A, Saito R
- Journal Title
  
  Antibiotics (Basel)
  
  Volume: 14 Issue: 1 Pages: 50-50
- DOI
  10.3390/antibiotics14010050
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K24127, KAKENHI-PROJECT-24K02682, KAKENHI-PROJECT-23K06556, KAKENHI-PROJECT-24K22178, KAKENHI-PROJECT-23KK0138
[Journal Article] Metatranscriptomic Analysis Reveals Actively Expressed Antimicrobial-Resistant Genes and Their Hosts in Hospital Wastewater2024
- Author(s)
  Ota Yusuke、Chen Fei、Prah Isaac、Mahazu Samiratu、Watanabe Kimiyo、Kinoshita Teruaki、Gu Yoshiaki、Nukui Yoko、Saito Ryoichi
- Journal Title
  
  Antibiotics
  
  Volume: 13 Issue: 12 Pages: 1122-1122
- DOI
  10.3390/antibiotics13121122
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K28241, KAKENHI-PROJECT-24K02682, KAKENHI-PROJECT-23K09603
[Journal Article] Colistin Resistance Mediated by Mcr-3-Related Phosphoethanolamine Transferase Genes in Aeromonas Species Isolated from Aquatic Environments in Avaga and Pakro Communities in the Eastern Region of Ghana2024
- Author(s)
  Mahazu S, Prah I, Ota Y, Hayashi T, Suzuki M, Yoshida M, Hoshino Y, Akeda Y, Suzuki T, Ishino T, Ablordey A, Saito R
- Journal Title
  
  Infect Drug Resist
  
  Volume: 17 Pages: 3011-3023
- DOI
  10.2147/idr.s468000
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K24127, KAKENHI-PROJECT-24K02682, KAKENHI-PROJECT-23K06556, KAKENHI-PROJECT-24K22178, KAKENHI-PROJECT-23KK0138
[Journal Article] Electrochemical sensing strategies for on‐site testing of pathogenic nucleic acids2024
- Author(s)
  Kanno Yusuke、Masui Shuzo、Ota Yusuke、Saito Ryoichi、Nisisako Takasi
- Journal Title
  
  Electrochemical Science Advances
  
  Volume: - Issue: 4
- DOI
  10.1002/elsa.202400005
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24K02682
[Journal Article] Comparative evaluation of analytical pipelines for Illumina short- and Nanopore long-read 16S rRNA gene amplicon sequencing with mock microbial communities2024
- Author(s)
  Yusuke Ota, Kei Yasunaga, Samiratu Mahazu, Isaac Prah, Satoshi Nagai, Yoshiaki Gu, Ryoichi Saito
- Journal Title
  
  Journal of Microbiological Methods
  
  Volume: 221 Pages: 106929-106929
- DOI
  10.1016/j.mimet.2024.106929
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K21233, KAKENHI-PROJECT-23K24127, KAKENHI-PROJECT-23K28241, KAKENHI-PROJECT-24K02682, KAKENHI-PROJECT-23K06556, KAKENHI-PROJECT-24K22178, KAKENHI-PROJECT-23KK0138
[Journal Article] Novel insights into genetic characteristics of blaGES-encoding plasmids from hospital sewage2023
- Author(s)
  Ota Y, Prah I, Mahazu S, Gu Y, Nukui Y, Koike R, Saito R.
- Journal Title
  
  Front Microbiol
  
  Volume: 14 Pages: 1209195-1209195
- DOI
  10.3389/fmicb.2023.1209195
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K09603, KAKENHI-PROJECT-20K08818, KAKENHI-PROJECT-23K28241
[Presentation] ガーナ共和国の医療排水由来Brucella intermediaの遺伝的特性解析2025
- Author(s)
  古屋瑠菜、武井理美、太田悠介、齋藤良一
- Organizer
  第36回日本臨床微生物会総会・学術集会
- Data Source
  KAKENHI-PROJECT-24K02682
[Presentation] 病院排水由来カルバペネマーゼ産生菌の全ゲノムおよび表現型解析2025
- Author(s)
  陳菲，太田悠介，齋藤良一
- Organizer
  第59回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-23K28241
[Presentation] 集中治療部の新棟運用開始に伴う環境微生物叢と薬剤耐性の動態2025
- Author(s)
  鈴木彩葉、太田悠介、具芳明、齋藤良一
- Organizer
  第36回日本臨床微生物会総会・学術集会
- Data Source
  KAKENHI-PROJECT-24K02682
[Presentation] Phenotypic and genotypic characterization of carbapenemase producers from hospital sewage in Ghana2024
- Author(s)
  Ayaha Suzuki, Isaac Prah, Yusuke Ota, Samiratu Mahazu, Mitsunori Yoshida, Masato Suzuki, Yoshihiko Hoshino, Toshihiko Suzuki, Anthony Ablordy, Ryoichi Saito
- Organizer
  The International Union of Microbiological Societies 2024
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-24K02682
[Presentation] Integrated metagenomic and metatranscriptomic analysis reveals actively expressed antimicrobial-resistant genes and their hosts in hospital wastewater2024
- Author(s)
  Yusuke Ota, Fei Chen, Isaac Prah, Samiratu Mahazu, Kimiyo Watanabe, Tomoko Oda, Teruaki Kinoshita, Yoshiaki Gu, Yoko Nukui, Ryoichi Saito
- Organizer
  International Microbiological Societies Congress (IUMS) 2024
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K28241
[Presentation] Molecular Epidemiological Analysis of Multidrug-Resistant Achromobacter xylosoxidans that Caused an Outbreak in Japan2024
- Author(s)
  Y Nukui, C Yamamoto, K Furukawa, T Inaba, R Saito, Y Ota, K Aoki, Y Ishii, R Koike
- Organizer
  AMS Microbe 2024
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-24K02682
[Presentation] Integrated metagenomic and metatranscriptomic analysis reveals actively expressed antimicrobial-resistant genes and their hosts in hospital wastewater2024
- Author(s)
  Yusuke Ota, Fei Chen, Isaac Prah, Samiratu Mahazu, Kimiyo Watanabe, Tomoko Oda, Teruaki Kinoshita, Yoshiaki Gu, Yoko Nukui, Ryoichi Saito
- Organizer
  The International Union of Microbiological Societies 2024
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-24K02682
[Presentation] Genetic characteristics evolving ciprofloxacin resistance in Neisseria meningitidis2024
- Author(s)
  Nanako Minami, Yusuke Ota, Hideki Takahashi, Ryoichi Saito
- Organizer
  The Asian Society for Clinical Pathology and Laboratory Medicine 2024
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-24K02682
[Presentation] Emergence of meropenem-resistant blaPOM-1 producing Pseudomonas otitidis isolated from a river water in Ghana2024
- Author(s)
  Frederick Ofosu Appiah, Samiratu Mahazu, Isaac Prah, Yusuke Ota, Yohei Nishikawa, Mitsunori Yoshida, Masato Suzuki, Yoshihiko Hoshino, Toshihiko Suzuki, Tomoko Ishino, Anthony Ablordy, Ryoichi Saito
- Organizer
  The Asian Society for Clinical Pathology and Laboratory Medicine 2024
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-24K02682
[Presentation] Functional characterization of polyphosphates in Neisseria meningitidis2024
- Author(s)
  Tomoko Oshiro, Yusuke Ota, Hideki Takahashi, Ryoichi Saito
- Organizer
  The Asian Society for Clinical Pathology and Laboratory Medicine 2024
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-24K02682
[Presentation] 耐性菌のゲノム解析と臨床検査への展開2023
- Author(s)
  太田悠介
- Organizer
  令和5年度日臨技中部圏支部研修会
- Invited
- Data Source
  KAKENHI-PROJECT-23K28241
[Presentation] Molecular characterization of blaGES-encoding plasmids from hospital sewage in Japan.2023
- Author(s)
  Yusuke Ota, Isaac Prah, Samiratu Mahazu, Yoshiaki Gu, Ryuji Koike, Ryoichi Saito.
- Organizer
  33rd European Congress of Clinical Microbiology and Infectious Diseases
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K28241
[Presentation] 病院排水から分離されたGES型及びIMP型カルバペネマーゼ産生菌の全ゲノム解析2023
- Author(s)
  陳菲、太田悠介、具芳明、小池竜司、齋藤良一
- Organizer
  第17回日本臨床検査学教育学会学術大会
- Data Source
  KAKENHI-PROJECT-23K28241
[Presentation] 16S rRNAアンプリコン解析におけるショート及びロングリード解析パイプラインの比較評価2023
- Author(s)
  太田悠介、齋藤良一
- Organizer
  第70回日本臨床検査医学会学術集会
- Data Source
  KAKENHI-PROJECT-23K28241
[Presentation] 病院排水より分離されたGES型カルバペネマーゼ産生菌のゲノム解析2023
- Author(s)
  太田悠介、具芳明、小池竜司、齋藤良一
- Organizer
  第97回日本感染症学会総会・学術講演会
- Data Source
  KAKENHI-PROJECT-23K28241
[Presentation] 水環境における薬剤耐性の現状と求められる対策2023
- Author(s)
  太田悠介、齋藤良一
- Organizer
  第35回日本臨床微生物学会総会・学術集会
- Invited
- Data Source
  KAKENHI-PROJECT-23K28241

1. 齋藤良一 (00581969)

# of Collaborated Projects: 2 results

# of Collaborated Products: 17 results
2. 具芳明 (30622526)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
3. NAGAI Satoshi

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
4. 鈴木敏彦

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
5. 貫井陽子

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Ota Yusuke 太田 悠介

Research Projects

Research Products

Co-Researchers

病院排水中バイオフィルムの「薬剤耐性進化の温床」機能の解明とリスク評価基盤の構築Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Comprehensive evaluation of the distribution and characteristics of antimicrobial resistance in hospital wastewater using metagenomic dataPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Antimicrobial resistance dynamics using ultra-high precision metagenomics in medical facility environments and construction of environmental improvement measures

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Characterization of bacterial small-colony variants causing antimicrobial resistance using omics analysis and establishment of their microbiological assaysPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Emergence of Carbapenem-Resistant blaPOM-1 Harboring Pseudomonas otitidis Isolated from River Water in Ghana2025

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Metatranscriptomic Analysis Reveals Actively Expressed Antimicrobial-Resistant Genes and Their Hosts in Hospital Wastewater2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Colistin Resistance Mediated by Mcr-3-Related Phosphoethanolamine Transferase Genes in Aeromonas Species Isolated from Aquatic Environments in Avaga and Pakro Communities in the Eastern Region of Ghana2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Electrochemical sensing strategies for on‐site testing of pathogenic nucleic acids2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Comparative evaluation of analytical pipelines for Illumina short- and Nanopore long-read 16S rRNA gene amplicon sequencing with mock microbial communities2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Novel insights into genetic characteristics of blaGES-encoding plasmids from hospital sewage2023

Author(s)

Journal Title

DOI

Data Source

[Presentation] ガーナ共和国の医療排水由来Brucella intermediaの遺伝的特性解析2025

Author(s)

Organizer

Data Source

[Presentation] 病院排水由来カルバペネマーゼ産生菌の全ゲノムおよび表現型解析2025

Author(s)

Organizer

Data Source

[Presentation] 集中治療部の新棟運用開始に伴う環境微生物叢と薬剤耐性の動態2025

Author(s)

Organizer

Data Source

[Presentation] Phenotypic and genotypic characterization of carbapenemase producers from hospital sewage in Ghana2024

Author(s)

Organizer

Data Source

[Presentation] Integrated metagenomic and metatranscriptomic analysis reveals actively expressed antimicrobial-resistant genes and their hosts in hospital wastewater2024

Author(s)

Organizer

Data Source

[Presentation] Molecular Epidemiological Analysis of Multidrug-Resistant Achromobacter xylosoxidans that Caused an Outbreak in Japan2024

Author(s)

Ota Yusuke 太田悠介