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Oda Takashi  小田 隆

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ODA Takashi  小田 隆

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Researcher Number 00573164
Other IDs
Affiliation (Current) 2025: 国立研究開発法人日本原子力研究開発機構, J-PARCセンター, 研究職
Affiliation (based on the past Project Information) *help 2024: 国立研究開発法人日本原子力研究開発機構, J-PARCセンター, 研究職
2023: 国立研究開発法人日本原子力研究開発機構, 原子力科学研究部門 J-PARCセンター, 研究職
2020 – 2022: 立教大学, 理学部, 助教
2018 – 2019: 横浜市立大学, 生命医科学研究科, 特任助教
2015: 横浜市立大学, 大学院生命医科学研究科, 特任助教
2013 – 2015: 横浜市立大学, 生命医科学研究科, 特任助教
Review Section/Research Field
Principal Investigator
Basic Section 43040:Biophysics-related / Basic Section 43020:Structural biochemistry-related / Biological Sciences
Except Principal Investigator
Basic Section 43020:Structural biochemistry-related / Broad Section B / Biophysics
Keywords
Principal Investigator
天然変性 / 古細菌 / 分子動力学計算 / X線小角散乱 / 中性子 / 小角散乱 / 高速原子間力顕微鏡(HS-AFM) / 分子動力学シミュレーション(MD) / 核磁気共鳴分光法(NMR) / X線小角散乱(SAXS) … More / 高速AFM / NMR / 高速原子間力顕微鏡 / 構造生物学 / SAXS / 天然変性タンパク質 / クロマチン … More
Except Principal Investigator
分子動力学計算 / 蛋白質ダイナミクス / 租視化分子動力学計算 / 中性子準弾性散乱 / MD連携解析 / 蛋白質階層間連携ダイナミクス / 蛋白質重水素化 / 階層関連ダイナミクス / ドメイン選択重水素化 / 新世代中性子構造生物学 / 計算機連携解析 / ドメインライゲーション / タンパク質重水素化 / 中性子溶液散乱 / 階層間連携ダイナミクス / 分子動力学シミュレーション / 重水素化 / 生体高分子ダイナミクス / 中性子散乱 / 複合体 / Cタンパク質 / パラミクソウイルス / two hybrid解析 / X線結晶構造解析 / サイトカイン / 自然免疫 / 新規標的因子 / C蛋白質 / センダイウイルス / セグメント重水素化 / 中性子小角散乱 / 天然変性タンパク質 / 粗視化モデル / セントロメア / ヌクレオソーム / クロマチン / 小角散乱 / 溶液散乱 Less
  • Research Projects

    (7 results)
  • Research Products

    (74 results)
  • Co-Researchers

    (24 People)
  •  超好熱性古細菌由来Hefの天然変性領域の高温下でのコンパクト化Principal Investigator

    • Principal Investigator
      小田 隆
    • Project Period (FY)
      2024 – 2026
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 43040:Biophysics-related
    • Research Institution
      Japan Atomic Energy Agency
  •  Structural basis of innate immune evasion by Paramyxovirus C protein involving the binding to the novel counterpart

    • Principal Investigator
      Oda Kosuke
    • Project Period (FY)
      2020 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 43020:Structural biochemistry-related
    • Research Institution
      Hiroshima University
  •  Elucidation of the structure and function common to two intrinsically disordered proteins with significantly different sequences.Principal Investigator

    • Principal Investigator
      Oda Takashi
    • Project Period (FY)
      2020 – 2023
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 43020:Structural biochemistry-related
    • Research Institution
      Japan Atomic Energy Agency
      Rikkyo University
  •  Dynamical structure analysis of intrinsically disordered proteins by neutron scattering using segment deuteration method

    • Principal Investigator
      SATO Mamoru
    • Project Period (FY)
      2018 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 43020:Structural biochemistry-related
    • Research Institution
      Yokohama City University
  •  Neutron Structural Biology for New Generation

    • Principal Investigator
      Sugiyama Masaaki
    • Project Period (FY)
      2018 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (S)
    • Review Section
      Broad Section B
    • Research Institution
      Kyoto University
  •  X線小角散乱を用いた再構成クロマチンの動的構造解析Principal Investigator

    • Principal Investigator
      小田 隆
    • Project Period (FY)
      2014 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Biological Sciences
    • Research Institution
      Yokohama City University
  •  Dynamics of Nucleosome Assembly in Solution Revealed by X-ray and Neutron Scattering

    • Principal Investigator
      Sato Mamoru
    • Project Period (FY)
      2013 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Biophysics
    • Research Institution
      Yokohama City University

All 2024 2023 2022 2021 2020 2019 2018 2016 2015 2014 2013 Other

All Journal Article Presentation

  • [Journal Article] Dynamic Solution Structures of Whole Human NAP1 Dimer Bound to One and Two Histone H2A-H2B Heterodimers Obtained by Integrative Methods2023

    • Author(s)
      Ohtomo Hideaki、Yamane Tsutomu、Oda Takashi、Kodera Noriyuki、Kurita Jun-ichi、Tsunaka Yasuo、Amyot Romain、Ikeguchi Mitsunori、Nishimura Yoshifumi
    • Journal Title

      Journal of Molecular Biology

      Volume: 435 Issue: 15 Pages: 168189-168189

    • DOI

      10.1016/j.jmb.2023.168189

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22KF0153, KAKENHI-PROJECT-20K06527, KAKENHI-PROJECT-20H00327
  • [Journal Article] Time-resolved study on signaling pathway of photoactivated adenylate cyclase and its nonlinear optical response2023

    • Author(s)
      Nakasone Yusuke、Murakami Hiroto、Tokonami Shunrou、Oda Takashi、Terazima Masahide
    • Journal Title

      Journal of Biological Chemistry

      Volume: 299 Issue: 11 Pages: 105285-105285

    • DOI

      10.1016/j.jbc.2023.105285

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K06527, KAKENHI-PROJECT-23K21099
  • [Journal Article] Internal dynamics of multidomain protein as revealed by an optimized neutron spin echo measurement and all-atom molecular dynamics simulation2023

    • Author(s)
      Inoue Rintaro、Oroguchi Tomotaka、Oda Takashi、Farago Bela、Martel Anne、Porcar Lionel、Sato Mamoru、Sugiyama Masaaki
    • Journal Title

      Physical Review Research

      Volume: 5 Issue: 4 Pages: 043154-043154

    • DOI

      10.1103/physrevresearch.5.043154

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K06527, KAKENHI-PROJECT-21K03489, KAKENHI-PROJECT-19KK0071
  • [Journal Article] Crystal structure of O‐ureidoserine racemase found in the D‐cycloserine biosynthetic pathway2022

    • Author(s)
      Oda Kosuke、Sakaguchi Takemasa、Matoba Yasuyuki
    • Journal Title

      Proteins: Structure, Function, and Bioinformatics

      Volume: 90 Issue: 4 Pages: 912-918

    • DOI

      10.1002/prot.26290

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20K06507, KAKENHI-PROJECT-20K05715
  • [Journal Article] Biochemical analysis of the replication initiator protein of staphylococcal plasmid pC1942022

    • Author(s)
      Maekawa Michinari、Oda Takashi、Hanai Ryo
    • Journal Title

      Biochimie

      Volume: 202 Pages: 85-93

    • DOI

      10.1016/j.biochi.2022.08.011

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H05229
  • [Journal Article] Catalytic mechanism of DcsB: Arginase framework used for hydrolyzing its inhibitor2022

    • Author(s)
      Oda Kosuke, Sakaguchi Takemasa, Matoba Yasuyuki
    • Journal Title

      Protein Science

      Volume: 31 Issue: 6

    • DOI

      10.1002/pro.4338

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20K05715, KAKENHI-PROJECT-20K06507
  • [Journal Article] Data Collection for Dilute Protein Solutions via a Neutron Backscattering Spectrometer2022

    • Author(s)
      Taiki Tominaga, Hiroshi Nakagawa, Masae Sahara, Takashi Oda, Rintaro Inoue and Masaaki Sugiyama
    • Journal Title

      Life

      Volume: 12 Issue: 5 Pages: 675-675

    • DOI

      10.3390/life12050675

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K06527, KAKENHI-PROJECT-19KK0071, KAKENHI-PROJECT-18H05229, KAKENHI-PROJECT-20H02944, KAKENHI-PROJECT-20K06579, KAKENHI-PLANNED-18H05534
  • [Journal Article] Ethanol susceptibility of SARS-CoV-2 and other enveloped viruses2021

    • Author(s)
      Nomura Toshihito、Nazmul Tanuza、Yoshimoto Reiko、Higashiura Akifumi、Oda Kosuke、Sakaguchi Takemasa
    • Journal Title

      Biocontrol Science

      Volume: -

    • DOI

      10.21203/rs.3.rs-379468/v1

    • NAID

      130008091354

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20K06507
  • [Journal Article] The basicity of an active-site water molecule discriminates between tyrosinase and catechol oxidase activity.2021

    • Author(s)
      Yasuyuki Matoba, Kosuke Oda, Yoshimi Muraki, Taro Masuda
    • Journal Title

      International Journal of Biological Macromolecules

      Volume: 183 Pages: 1861-1870

    • DOI

      10.1016/j.ijbiomac.2021.05.206

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19K06221, KAKENHI-PROJECT-20K05715, KAKENHI-PROJECT-20K06507
  • [Journal Article] Ethanol Susceptibility of SARS-CoV-2 and Other Enveloped Viruses2021

    • Author(s)
      NOMURA TOSHIHITO、NAZMUL TANUZA、YOSHIMOTO REIKO、HIGASHIURA AKIFUMI、ODA KOSUKE、SAKAGUCHI TAKEMASA
    • Journal Title

      Biocontrol Science

      Volume: 26 Issue: 3 Pages: 177-180

    • DOI

      10.4265/bio.26.177

    • NAID

      130008091354

    • ISSN
      1342-4815, 1884-0205
    • Language
      English
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20K06507
  • [Journal Article] Lectins engineered to favor a glycan-binding conformation have enhanced antiviral activity2021

    • Author(s)
      Matoba Yasuyuki、Sato Yuichiro、Oda Kosuke、Hatori Yuta、Morimoto Kinjiro
    • Journal Title

      Journal of Biological Chemistry

      Volume: - Pages: 100698-100698

    • DOI

      10.1016/j.jbc.2021.100698

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K05715, KAKENHI-PROJECT-20K06507
  • [Journal Article] C9orf72-derived arginine-rich poly-dipeptides impede phase modifiers2021

    • Author(s)
      Nanaura Hitoki、Aiba Yuichiro、Nakanishi Mari、Shiota Tomo、Hibino Masaki、Kikuchi Sotaro、Nagata Riko、Morikawa Naritaka、Iguchi Naohiko、Kiriyama Takao、Nagamori Shushi、Sugie Kazuma、Saio Tomohide、Yoshizawa Takuya、Mori Eiichiro et al.
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 5301-5301

    • DOI

      10.1038/s41467-021-25560-0

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K07978, KAKENHI-PROJECT-19K16060, KAKENHI-PROJECT-20K16583, KAKENHI-PROJECT-18H03984, KAKENHI-PROJECT-18H05229, KAKENHI-PROJECT-20H00327, KAKENHI-PROJECT-20H03199, KAKENHI-PROJECT-20K06493, KAKENHI-PROJECT-20K06527, KAKENHI-PROJECT-20K06569, KAKENHI-PROJECT-20K06579, KAKENHI-PROJECT-21K15032, KAKENHI-PROJECT-19KK0071, KAKENHI-PROJECT-22KJ0024, KAKENHI-PLANNED-20H05925, KAKENHI-PROJECT-19H05648
  • [Journal Article] Structural Insight into the Interaction of Sendai Virus C Protein with Alix To Stimulate Viral Budding2021

    • Author(s)
      Oda Kosuke、Matoba Yasuyuki、Sugiyama Masanori、Sakaguchi Takemasa
    • Journal Title

      Journal of Virology

      Volume: 95 Issue: 19

    • DOI

      10.1128/jvi.00815-21

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20K05715, KAKENHI-PROJECT-20K06507
  • [Journal Article] Structural and dynamics analysis of intrinsically disordered proteins by high-speed atomic force microscopy2020

    • Author(s)
      Kodera Noriyuki、Noshiro Daisuke、Dora Sujit K.、Mori Tetsuya、Habchi Johnny、Blocquel David、Gruet Antoine、Dosnon Marion、Salladini Edoardo、Bignon Christophe、Fujioka Yuko、Oda Takashi、Noda Nobuo N.、Sato Mamoru、Lotti Marina、Mizuguchi Mineyuki、Longhi Sonia、Ando Toshio
    • Journal Title

      Nature Nanotechnology

      Volume: 16 Issue: 2 Pages: 181-189

    • DOI

      10.1038/s41565-020-00798-9

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K06527, KAKENHI-PROJECT-20K06567, KAKENHI-PROJECT-19K16344, KAKENHI-PLANNED-19H05707, KAKENHI-PROJECT-17H06121, KAKENHI-PROJECT-20H00327, KAKENHI-PROJECT-18H02391
  • [Journal Article] Crystal structure of an Nω-hydroxy-L-arginine hydrolase found in the D-cycloserine biosynthetic pathway2020

    • Author(s)
      Oda Kosuke、Shimotani Natsuki、Kuroda Teruo、Matoba Yasuyuki
    • Journal Title

      Acta Crystallographica Section D Structural Biology

      Volume: 76 Issue: 6 Pages: 506-514

    • DOI

      10.1107/s2059798320004908

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20K05715, KAKENHI-PROJECT-20K06507
  • [Journal Article] Serine 298 Phosphorylation in Linker 2 of UHRF1 Regulates Ligand-Binding Property of Its Tandem Tudor Domain2020

    • Author(s)
      Kori Satomi、Jimenji Tomohiro、Ekimoto Toru、Sato Miwa、Kusano Fumie、Oda Takashi、Unoki Motoko、Ikeguchi Mitsunori、Arita Kyohei
    • Journal Title

      Journal of Molecular Biology

      Volume: 432 Issue: 14 Pages: 4061-4075

    • DOI

      10.1016/j.jmb.2020.05.006

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K06527, KAKENHI-ORGANIZER-19H05739, KAKENHI-PLANNED-19H05741, KAKENHI-PROJECT-18H02391, KAKENHI-PROJECT-18H02392, KAKENHI-PROJECT-19J22030
  • [Journal Article] Dynamics of proteins with different molecular structures under solution condition2020

    • Author(s)
      Inoue Rintaro、Oda Takashi、Nakagawa Hiroshi、Tominaga Taiki、Saio Tomohide、Kawakita Yukinobu、Shimizu Masahiro、Okuda Aya、Morishima Ken、Sato Nobuhiro、Urade Reiko、Sato Mamoru、Sugiyama Masaaki
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 21678-21678

    • DOI

      10.1038/s41598-020-78311-4

    • NAID

      120007193758

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K06527, KAKENHI-PROJECT-20K06579, KAKENHI-PROJECT-19KK0071, KAKENHI-PLANNED-18H05534, KAKENHI-PROJECT-18H05229, KAKENHI-PROJECT-18H02391, KAKENHI-PROJECT-20H02944, KAKENHI-PROJECT-19K16088, KAKENHI-PUBLICLY-19H04945
  • [Journal Article] Catalytic specificity of the Lactobacillus plantarum cystathionine γ-lyase presumed by the crystallographic analysis2020

    • Author(s)
      Matoba Yasuyuki、Noda Masafumi、Yoshida Tomoki、Oda Kosuke、Ezumi Yuka、Yasutake Chiaki、Izuhara-Kihara Hisae、Danshiitsoodol Narandarai、Kumagai Takanori、Sugiyama Masanori
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 14886-14886

    • DOI

      10.1038/s41598-020-71756-7

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K05715, KAKENHI-PROJECT-20K06507
  • [Journal Article] 検出技術:天然変性蛋白質の構造生物学2020

    • Author(s)
      小田 隆、齋尾智英
    • Journal Title

      生物工学

      Volume: 98

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H05229
  • [Journal Article] Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin in the green alga Chlamydomonas reinhardtii2019

    • Author(s)
      Charoenwattanasatien Ratana、Zinzius Karen、Scholz Martin、Wicke Susann、Tanaka Hideaki、Brandenburg Johann S.、Marchetti Giulia M.、Ikegami Takahisa、Matsumoto Takashi、Oda Takashi、Sato Mamoru、Hippler Michael、Kurisu Genji
    • Journal Title

      Journal of Biological Chemistry

      Volume: 295 Issue: 1 Pages: 170-180

    • DOI

      10.1074/jbc.ra119.008735

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-16H06560, KAKENHI-PROJECT-18H05229, KAKENHI-PROJECT-16K14683
  • [Journal Article] Structure of the UHRF1 Tandem Tudor Domain Bound to a Methylated Non-histone Protein, LIG1, Reveals Rules for Binding and Regulation2019

    • Author(s)
      Kori, S. Ferry, L. Matano, S. Jimenji, T. Kodera, N. Tsusaka, T. Matsumura, R. Oda, T. Sato, M. Dohmae, N. Ando, T. Shinkai, Y. Defossez, P. A. Arita, K.
    • Journal Title

      Structure

      Volume: 27 Issue: 3 Pages: 1-12

    • DOI

      10.1016/j.str.2018.11.012

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K19345, KAKENHI-PLANNED-18H05530, KAKENHI-PLANNED-26119003, KAKENHI-PROJECT-18H02391, KAKENHI-PROJECT-18H02392, KAKENHI-PROJECT-18H03991
  • [Journal Article] Cooperative DNA Binding of the Plasmid Partitioning Protein TubR from the Bacillus cereus pXO1 Plasmid2018

    • Author(s)
      I. Hayashi, T. Oda, M. Sato, S. Fuchigami
    • Journal Title

      J. Mol. Biol.

      Volume: 430 Issue: 24 Pages: 5015-5028

    • DOI

      10.1016/j.jmb.2018.11.001

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H02391
  • [Journal Article] Extended string-like binding of the phosphorylated HP1α N-terminal tail to the lysine 9-methylated histone H3 tail.2016

    • Author(s)
      Shimojo H, Kawaguchi A, Oda T, Hashiguchi N, Omori S, Moritsugu K, Kidera A, Hiragami-Hamada K, Nakayama J, Sato M, Nishimura Y.
    • Journal Title

      Sci Rep.

      Volume: 6 Issue: 1 Pages: 22527-22527

    • DOI

      10.1038/srep22527

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-ORGANIZER-23114001, KAKENHI-PLANNED-23114005, KAKENHI-PUBLICLY-26116519, KAKENHI-PROJECT-25291037
  • [Journal Article] A novel 3' splice site recognition by the two zinc fingers in the U2AF small subunit.2015

    • Author(s)
      Yoshida H, Park S-Y, Oda T, Akiyoshi T, Sato M, Shirouzu M, Tsuda K, Kuwasako K, Unzai S, Muto Y, Urano T, Obayashi E.
    • Journal Title

      Genes Dev.

      Volume: 29 Issue: 15 Pages: 1649-1660

    • DOI

      10.1101/gad.267104.115

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K06980, KAKENHI-PROJECT-15K06982, KAKENHI-PROJECT-15K18499, KAKENHI-PUBLICLY-26116519, KAKENHI-PROJECT-25291016, KAKENHI-PROJECT-25291037
  • [Journal Article] Molecular basis for SMC rod formation and its dissolution upon DNA binding2015

    • Author(s)
      Y. Soh, F. Bürmann, H. Shin, T. Oda, K. S. Jin, C. P. Toseland, C. Kim, H. Lee, S. J. Kim, M. Kong, M. Durand-Diebold, Y. Kim, H. M. Kim, N. K. Lee, M. Sato, B. Oh, S. Gruber
    • Journal Title

      Mol. Cell

      Volume: 57 Issue: 2 Pages: 290-303

    • DOI

      10.1016/j.molcel.2014.11.023

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-25291037, KAKENHI-PUBLICLY-26116519
  • [Journal Article] 小角散乱と結晶構造の複合構造解析2014

    • Author(s)
      小田隆、橋本博
    • Journal Title

      日本結晶学会誌

      Volume: 56 Pages: 247-252

    • NAID

      130004688357

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-26116519
  • [Journal Article] Distinct features of the histone core structure in nucleosomes containing the histone H2A.B variant.2014

    • Author(s)
      Sugiyama M, Arimura Y, Shirayama K, Fujita R, Oba Y, Sato N, Inoue R, Oda T, Sato M, Heenan RK, Kurumizaka H.
    • Journal Title

      Biophys J.

      Volume: 106 Issue: 10 Pages: 2206-2213

    • DOI

      10.1016/j.bpj.2014.04.007

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-13J03931, KAKENHI-ORGANIZER-21113001, KAKENHI-PLANNED-25116002, KAKENHI-PROJECT-25291037, KAKENHI-PUBLICLY-26116509, KAKENHI-PUBLICLY-26116519
  • [Journal Article] A structure-based model of substrate discrimination by a non-canonical PDZ tandem in the intramembrane-cleaving protease RseP.2014

    • Author(s)
      檜作 洋平, 小田 隆, 田畑 早苗, 川上-田村 恵子, 大井 里香, 佐藤 衛, 高木 淳一, 秋山 芳展, 禾 晃和
    • Journal Title

      Structure

      Volume: 22 Issue: 2 Pages: 326-336

    • DOI

      10.1016/j.str.2013.12.003

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-12J05188, KAKENHI-PLANNED-21113002, KAKENHI-ORGANIZER-24111001, KAKENHI-PLANNED-24111006, KAKENHI-PROJECT-24370054, KAKENHI-PROJECT-25291037
  • [Journal Article] Structural basis of a nucleosome containing histone H2A. B/H2A. Bbd that transiently associates with reorganized chromatin.2013

    • Author(s)
      Arimura Y., Kimura H., Oda T., Sato K., Osakabe A., Tachiwana H., Sato Y., Kinugasa Y., Ikura T., Sugiyama M., Sato M., Kurumizaka H.
    • Journal Title

      Sci Rep.

      Volume: 3 Issue: 1 Pages: 3510-3510

    • DOI

      10.1038/srep03510

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-13J03931, KAKENHI-ORGANIZER-21113001, KAKENHI-PLANNED-21113002, KAKENHI-PLANNED-22131004, KAKENHI-PROJECT-23510061, KAKENHI-PLANNED-25116002, KAKENHI-PLANNED-25116005, KAKENHI-PUBLICLY-25118714, KAKENHI-PUBLICLY-25131720, KAKENHI-PROJECT-25291037, KAKENHI-PROJECT-25650009
  • [Presentation] X線/中性子散乱によるマルチドメインタンパク質Hefの構造/ダイナミクス研究2024

    • Author(s)
      小田 隆, 井上 倫太郎, 守島 健, 會澤 直樹, 富永 大輝, 中川 洋1, 大井 里香, 石野 園子, 石野 良純, 奥 隆之, 佐藤 衛, 杉山 正明
    • Organizer
      2023年度量子ビームサイエンスフェスタ,第15回 MLFシンポジウム, 第41回PFシンポジウム
    • Data Source
      KAKENHI-PROJECT-20K06527
  • [Presentation] 区分重水素化タンパク質を用いた中性子小角散乱解析2023

    • Author(s)
      小田 隆, 井上 倫太郎, 守島 健, 會澤 直樹, 大井 里香, 石野 良純, 奥 隆之, 佐藤 衛, 杉山 正明.
    • Organizer
      日本中性子科学会第23回年会
    • Data Source
      KAKENHI-PROJECT-20K06527
  • [Presentation] Analysis of flexible structure of multi-domain protein by SANS using segment deuteration technique.2023

    • Author(s)
      Takashi Oda, Rintaro Inoue, Ken Morishima, Rika Oi, Yoshizumi Ishino, Mamoru Sato, Masaaki Sugiyama.
    • Organizer
      Twenty-Sixth Congress and General Assembly of the International Union of Crystallography.
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K06527
  • [Presentation] X線小角散乱と計算科学を用いた統合的解析による天然変性タンパク質の動的構造と機能の理解2022

    • Author(s)
      小田 隆, 大井里香, 古寺哲幸, 安藤敏夫, 小沼 剛, 菅瀬謙治, 苙口友隆, 井上倫太郎, 杉山正明, 石野園子, 石野良純, 佐藤 衛
    • Organizer
      日本農芸化学会2022年度京都大会(JSBBA2022)
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H05229
  • [Presentation] Catalytic Mechanism of DcsB: Arginase Framework Used for Hydrolyzing Its Inhibitor.2022

    • Author(s)
      Oda, K., Matoba, Y.
    • Organizer
      International Union of Microbiological Societies (IUMS 2022)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K06507
  • [Presentation] 好熱性古細菌由来天然変性タンパク質の生理的温度における動的構造とダイナミクス2022

    • Author(s)
      小田 隆、井上 倫太郎、富永 大輝、中川 洋、守島 健、岩瀬 裕希、石野 良純、佐藤 衛、杉山 正明
    • Organizer
      日本中性子科学会年会
    • Data Source
      KAKENHI-PROJECT-20K06527
  • [Presentation] X線小角散乱と計算科学を用いた統合的解析による天然変性タンパク質の動的構造と機能の理解2022

    • Author(s)
      小田隆, 大井里香, 古寺哲幸, 安藤敏夫, 小沼剛, 菅瀬謙治, 苙口友隆, 井上倫太郎, 杉山正明, 石野園子, 石野良純, 佐藤衛
    • Organizer
      日本農芸化学会2022年度京都大会(JSBBA2022)
    • Invited
    • Data Source
      KAKENHI-PROJECT-20K06527
  • [Presentation] Similar but different catalytic mechanism of N-hydroxy-L-arginine hydrolase: arginase framework used for hydrolyzing its inhibitor2022

    • Author(s)
      Oda, K., Matoba, Y.
    • Organizer
      36th Annual Symposium of the Protein-Society
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K06507
  • [Presentation] Dynamics and Structure of Intrinsically Disordered Region of Hef as Studied by Solution Scattering2022

    • Author(s)
      R. Inoue, T. Oda, H. Nakagwa, T. Tominaga, Y. Kawakita, M. Sato, M. Sugiyama
    • Organizer
      XVIII International Small Angle Scattering Conference - SAS2022
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H05229
  • [Presentation] Internal Dynamics of Intrinsically Disordered Protein as Studied by Neutron Scattering2022

    • Author(s)
      井上 倫太郎、小田 隆、中川 洋、富永 大輝、川北 至信、佐藤 衛、杉山 正明
    • Organizer
      日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-20K06527
  • [Presentation] アルギナーゼ阻害剤を加水分解するためアルギナーゼのフレームワークを用いたDcsBの触媒機構2022

    • Author(s)
      小田康祐, 的場康幸:
    • Organizer
      第22回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-20K06507
  • [Presentation] Structural insight into the interaction of the Sendai virus C protein with Alix stimulating the ESCRT-dependent viral budding.2021

    • Author(s)
      Kosuke Oda, Yasuyuki Matoba, Masanori Sugiyama, Takemasa Sakaguchi
    • Organizer
      第21回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-20K06507
  • [Presentation] 中性子散乱実験に向けた区分重水素化タンパク質の調製2021

    • Author(s)
      小田 隆, 井上倫太郎, 中川 洋, 富永大輝, 大井里香, 石野良純, 杉山正明, 佐藤 衛
    • Organizer
      日本中性子科学会第21回年会
    • Data Source
      KAKENHI-PROJECT-18H05229
  • [Presentation] Integrated approach using X-ray/Neutron scattering and MD simulation for understanding dynamic structure and function of IDP2021

    • Author(s)
      小田隆
    • Organizer
      第59回 日本生物物理学会年会(BSJ2021)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K06527
  • [Presentation] 中性子散乱実験に向けた区分重水素化タンパク質の調製2021

    • Author(s)
      小田隆, 井上倫太郎, 中川洋, 富永大輝, 大井里香, 石野良純, 杉山正明, 佐藤衛
    • Organizer
      第21回日本中性子科学会年会(JSNS2021)
    • Data Source
      KAKENHI-PROJECT-20K06527
  • [Presentation] ESCRT依存的出芽に重要なセンダイウイルスC蛋白質とAlix間の結合とその分子基盤2021

    • Author(s)
      小田康祐, 的場康幸, 杉山政則, 坂口剛正
    • Organizer
      日本薬学会第141年会
    • Data Source
      KAKENHI-PROJECT-20K06507
  • [Presentation] Significance of the association of the C protein with Alix for the budding of Sendai virus on the basis of the crystal structure2020

    • Author(s)
      Kosuke Oda, Yasuyuki Matoba, Masanori Sugiyama, Takemasa Sakaguchi.
    • Organizer
      IUMS 2020
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K06507
  • [Presentation] 蛋白質の階層構造ダイナミクスの解明2020

    • Author(s)
      中川洋、井上倫太郎、小田隆、矢木-内海真穂、斉尾智英、苙口友隆、長田裕也、杉山正明、佐藤衛、川北至信、岩瀬裕希、富永大輝、高田慎一
    • Organizer
      量子ビームサイエンスフェスタ
    • Data Source
      KAKENHI-PROJECT-18H05229
  • [Presentation] SARS-COV-2構造蛋白質の立体構造解析を目指した発現系構築の取り組み2020

    • Author(s)
      東浦彰史, 桝本耀太, 狭間美沙, 今井天晴, 上岡史生子, 小田康祐, 坂口剛正.
    • Organizer
      第35回中国四国ウイルス研究会
    • Data Source
      KAKENHI-PROJECT-20K06507
  • [Presentation] The structure and function of intrinsically disordered region of Hef that is associated with a DNA repair2019

    • Author(s)
      T. Oda, A. Sekino, A. Murakami, R. Oi, M. Yoneyama, N. Kodera, T. Ando, T. Konuma, K. Sugase, T. Oroguchi, S. Ishino, Y. Ishino, and M. Sato
    • Organizer
      第57回 日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-18H05229
  • [Presentation] Protein deuteration for small angle neutron scattering2019

    • Author(s)
      小田 隆、関野絢子、米山真紀、村上綾香、苙口友隆、浴本 亨、池口満徳、杉山正明、石野良純、佐藤 衛
    • Organizer
      J-PARC Workshop2018(Deuterium Labeling Study for Neutron Science)
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H02391
  • [Presentation] DNA修復にかかわるHefの天然変性領域の揺らいだ構造と機能2019

    • Author(s)
      小田 隆、関野絢子、村上綾香、大井里香、米山真紀、古寺哲幸、安藤敏夫、小沼 剛、菅瀬謙治、苙口友隆、井上倫太郎、杉山正明、石野園子、石野良純、佐藤 衛
    • Organizer
      第4回LLPS研究会・ASUKA若手交流会2019
    • Data Source
      KAKENHI-PROJECT-18H02391
  • [Presentation] DNA修復にかかわるHefの天然変性領域の揺らいだ構造と機能2019

    • Author(s)
      小田 隆, 関野 絢子, 村上 綾香, 大井 里香, 米山 真紀, 古寺 哲幸, 安藤 敏夫, 小沼 剛, 菅瀬 謙治, 苙口 友隆, 井上 倫太郎, 杉山 正明, 石野 園子, 石野 良純, 佐藤 衛
    • Organizer
      第4回LLPS研究会・ASUKA若手交流会2019
    • Data Source
      KAKENHI-PROJECT-18H05229
  • [Presentation] The dynamic structure and function of intrinsically disordered region of Hef that is associated with a DNA repair2019

    • Author(s)
      T. Oda, A. Sekino, A. Murakami1, R. Oi, M. Yoneyama, N. Kodera, T. Ando, T. Konuma, K. Sugase, T. Oroguchi, R. Inoue, M. Sugiyama, S. Ishino, Y. Ishino, and M. Sato
    • Organizer
      The 3rd Asia-Oceania Conference on Neutron Scattering 2019 (AOCNS 2019)
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H02391
  • [Presentation] The structure and function of intrinsically disordered region of Hef that is associated with a DNA repair(DNA修復にかかわるHefの天然変性領域の構造と機能)2019

    • Author(s)
      T. Oda, A. Sekino, A. Murakami, R. Oi, M. Yoneyama, N. Kodera, T. Ando, T. Konuma, K. Sugase, T. Oroguchi, S. Ishino, Y. Ishino, M. Sato
    • Organizer
      第57回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-18H02391
  • [Presentation] SEX-SAXSによるLDLRファミリーのpH依存的な構造変化の検証2019

    • Author(s)
      塩澤亜紀、飯田麻生、小田 隆、佐藤 衛、禾 晃和
    • Organizer
      第19回日本蛋白質科学会年会
    • Data Source
      KAKENHI-PROJECT-18H02391
  • [Presentation] QENS of protein solutions measured by the TOF near Backscattering Spectrometer DNA2019

    • Author(s)
      H. Nakagawa, T. Saio, T. Oda, M. Sato, R. Inoue, M. Sugiyama, T. Tominaga, Y. Kawakita
    • Organizer
      J-PARC Symposium 2019
    • Data Source
      KAKENHI-PROJECT-18H05229
  • [Presentation] The dynamic structure and function of intrinsically disordered region of Hef that is associated with a DNA repair2019

    • Author(s)
      T. Oda, A. Sekino, A. Murakami, R. Oi, M. Yoneyama, N. Kodera, T. Ando, T. Konuma, K. Sugase, T. Oroguchi, R. Inoue, M. Sugiyama, S. Ishino, Y. Ishino, M. Sato
    • Organizer
      3rd Asia-Oceania Conference on Neutron Scattering (AOCNS 2019)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H05229
  • [Presentation] 溶液散乱と計算科学で明らかにする天然変性タンパク質の構造と機能2018

    • Author(s)
      小田 隆、関野絢子、米山真紀、村上綾香、苙口友隆、浴本 亨、池口満徳、杉山正明、石野良純、佐藤 衛
    • Organizer
      PF研究会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H02391
  • [Presentation] 中性子溶液散乱を基軸とした蛋白質の構造・ダイナミクス解析への挑戦2018

    • Author(s)
      杉山正明、中川 洋、斉尾智英、矢木真穂、苙口友隆、小田 隆、井上倫太郎、佐藤信浩、守島 健、日野正裕、川北至信、高田愼一、富永大輝、佐藤 衛
    • Organizer
      日本中性子科学会第18回年会
    • Data Source
      KAKENHI-PROJECT-18H02391
  • [Presentation] SANSと計算科学による天然変性タンパク質の動的構造と機能の解明2018

    • Author(s)
      小田 隆、関野絢子、米山真紀、浴本 亨、池口満徳、苙口友隆、杉山正明、石野良純、佐藤 衛
    • Organizer
      日本中性子科学会第18回年会
    • Data Source
      KAKENHI-PROJECT-18H02391
  • [Presentation] Coarse-Grained MD-SAXS method and application to nucleosomes2015

    • Author(s)
      Y. Kokabu, T. Oda, M. Sugiyama, H. Kurumizaka, M. Sato, M. Ikeguchi
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学
    • Year and Date
      2015-09-13
    • Data Source
      KAKENHI-PROJECT-25291037
  • [Presentation] Structural analysis of tri-nucleosome containing centromere specific histone variant2015

    • Author(s)
      Takashi Oda, Hiroaki Tachiwana, Yusuke Takagi, Yasuhiro Arimura, Shoji Takada, Hitoshi Kurumizaka, and Mamoru Sato
    • Organizer
      International Symposium on Chromatin Structure, Dynamics, and Function
    • Place of Presentation
      兵庫県淡路市
    • Year and Date
      2015-08-23
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-26116519
  • [Presentation] 大腸菌膜内切断プロテアーゼRsePの基質認識におけるPDZドメインの役割2013

    • Author(s)
      檜作 洋平, 禾 晃和, 小田 隆, 田畑 早苗, 川上-田村 恵子, 佐藤 衛, 高木 淳一, 秋山 芳展
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-25291037
  • [Presentation] Structural study on REV7, the adaptor protein coordinating REV1 and REV3 polymerase in ttanslesion DNA synthesis2013

    • Author(s)
      Sotaro Kikuchi, Kodai Hara, Toshiyuki Shimizu, Mamoru Sato, Hiroshi Hashimoto
    • Organizer
      International Conference on Structural Genomics-Structural Life Science-(ICSG2013-SLS)
    • Place of Presentation
      Keio Plaza Hotel Sapporo in Sapporo
    • Data Source
      KAKENHI-PROJECT-25291037
  • [Presentation] 表層ストレス応答を制御する腸内切断プロテアーゼRsePのタンデムPDZドメインによる基質選別機構2013

    • Author(s)
      Yohei Hizukuri, Takashi Oda, Sanae Tabata, Tamura-Kawakami Keiko, Mamoru Sato, Junichi Takagi, Terukazu Nogi, Yoshimori Akiyama
    • Organizer
      日本生物物理学会第51回年会
    • Place of Presentation
      国立京都国際会館
    • Data Source
      KAKENHI-PROJECT-25291037
  • [Presentation] Structural analysis of the PDZ tandem fragment of the bacterial intramembrane-cleaving protease RseP2013

    • Author(s)
      Terukazu Nogi, Yohei Hizukuri, Takashi Oda, Sanae Tabata, Keiko Tamura-Kawakami, Mamoru Sato, Junichi Takagi, Yoshinori Akiyama
    • Organizer
      International Conference on Structural Genomics-Structural Life Science-(ICSG2013-SLS)
    • Place of Presentation
      Keio Plaza Hotel Sapporo in Sapporo
    • Data Source
      KAKENHI-PROJECT-25291037
  • [Presentation] N-terminal phosphorylated tail of HP1α behaves like an extended hard acidic string to promote the binding to methylated histone H3K9 tail2013

    • Author(s)
      Mayumi Kawaguchi, Hideaki Shimojo, Kyoko Hamada, Jun-ichi Nakayama, Takashi Oda, Mamoru Sato, Yoshifumi Nishimura
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Data Source
      KAKENHI-PROJECT-25291037
  • [Presentation] ヒトヒストンバリアントH2A.Bの解析2013

    • Author(s)
      有村泰宏、小田 隆、佐藤浩一、藤田理紗、松本亮平、田口裕之、堀越直樹、越阪部晃永、立和名博昭、杉山正明、佐藤 衛、木村 宏、胡桃坂仁志
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-25291037
  • [Presentation] X線小角散乱によるタンパク質の揺らいだ構造の解析

    • Author(s)
      小田隆
    • Organizer
      第2回タンパク質X線溶液散乱講習会
    • Place of Presentation
      つくば市
    • Year and Date
      2014-06-03 – 2014-06-04
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-26116519
  • [Presentation] Structural dynamics of tri-nucleosome studied by combination of coarse grained molecular simulation and SAXS

    • Author(s)
      Yusuke Takagi, Yuichi Kokabu, Takashi Oda, Hiroaki Tachiwana, Hiroo Kenzaki, Hitoshi Kurumizaka, Mamoru Sato, Mitsunori Ikeguchi, Shoji Takada
    • Organizer
      日本生物物理学会第52回年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Data Source
      KAKENHI-PROJECT-25291037
  • [Presentation] Structural and mutational analysis of a PDZ tandem of intramembrane cleaving protease RseP

    • Author(s)
      Terukazu Nogi, Yohei Hizukuri, Sanae Tabata, Keiko Tamura-Kawakami, Takashi Oda, Mamoru Sato, Junichi Takagi, Yoshinori Akiyama
    • Organizer
      XXIII Congress of the International Union of Crystallography
    • Place of Presentation
      Palais des congress de Montreal, Quebec, Canada
    • Year and Date
      2014-08-05 – 2014-08-12
    • Data Source
      KAKENHI-PROJECT-25291037
  • [Presentation] DNA架橋損傷修復に関わる天然変性タンパク質Hefの構造研究

    • Author(s)
      小田 隆、小林裕也、舘岡太郎、宮城泰城、石黒あかり、有田恭平、禾 晃和、石野良純、杉山正明、佐藤 衛
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜(横浜)
    • Year and Date
      2014-06-25 – 2014-06-27
    • Data Source
      KAKENHI-PROJECT-25291037
  • [Presentation] DNA架橋損傷修復に関わる天然変性タンパク質Hefの構造研究

    • Author(s)
      小田隆, 小林裕也, 舘岡太郎, 宮城泰城, 石黒あかり, 有田恭平, 禾晃和, 石野良純, 杉山正明, 佐藤衛
    • Organizer
      第14会日本蛋白質科学会年会
    • Place of Presentation
      横浜市
    • Year and Date
      2014-06-24 – 2014-06-27
    • Data Source
      KAKENHI-PUBLICLY-26116519
  • [Presentation] 細胞表層ストレス応答制御に関わる膜内切断プロテアーゼRsePのタンデムPDZドメインによる切断基質選別機構の解析

    • Author(s)
      檜作 洋平, 小田 隆, 田畑 早苗, 川上-田村 恵子, 大井里香, 佐藤 衛, 高木 淳一, 禾 晃和, 秋山 芳展
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      国立京都国際会館
    • Year and Date
      2014-10-15 – 2014-10-18
    • Data Source
      KAKENHI-PROJECT-25291037
  • 1.  Sato Mamoru (60170784)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 29 results
  • 2.  井上 倫太郎 (80563840)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 7 results
  • 3.  KURUMIZAKA Hitoshi (80300870)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 3 results
  • 4.  Oda Kosuke (60571255)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 9 results
  • 5.  Sugiyama Masaaki (10253395)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 7 results
  • 6.  中川 洋 (20379598)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 3 results
  • 7.  矢木 真穂 (40608999)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 8.  富永 大輝 (50513694)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 4 results
  • 9.  齋尾 智英 (80740802)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 10.  苙口 友隆 (90589821)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 5 results
  • 11.  KODERA Noriyuki
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 12.  SUGAWARA Tatsuya
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 13.  AMYOT ROMAIN
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 14.  朴 三用
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 15.  雲財 悟
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 16.  栗栖 源嗣
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 17.  的場 康幸
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 5 results
  • 18.  中山 潤一
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 19.  杉江 和馬
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 20.  七浦 仁紀
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 21.  桐山 敬生
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 22.  塩田 智
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 23.  井口 直彦
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 24.  檜作 洋平
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results

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