SATO KENGO 佐藤健吾

… Alternative Names

SATO Kengo 佐藤健吾

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Researcher Number	20365472
Other IDs	https://orcid.org/0000-0001-6744-7390
Affiliation (Current)	2025: 東京科学大学, 生命理工学院, 教授
Affiliation (based on the past Project Information) *help	2024 – 2025: 東京科学大学, 生命理工学院, 教授 2024: 東京電機大学, システムデザイン工学部, 教授 2023: 東京工業大学, 生命理工学院, 教授 2021 – 2022: 東京電機大学, システムデザイン工学部, 教授 2016 – 2021: 慶應義塾大学, 理工学部(矢上), 講師 … More 2010 – 2015: 慶應義塾大学, 理工学部, 講師 2011: 慶應義塾大学, 理工学部, 専任講師 2004 – 2006: 慶應義塾大学, 理工学部, 助手 Less
Review Section/Research Field	Principal Investigator Basic Section 62010:Life, health and medical informatics-related / Medium-sized Section 62:Applied informatics and related fields / Life / Health / Medical informatics / Bioinformatics/Life informatics Except Principal Investigator Bioinformatics/Life informatics / Medium-sized Section 62:Applied informatics and related fields / Science and Engineering / System genome science
Keywords	Principal Investigator バイオインフォマティクス / RNA二次構造 / 深層学習 / RNA修飾 / ナノポアシークエンサー / 構造予測 / RNA / RNA立体構造 / RNA配列設計 / 深層強化学習 … More / 敵対的生成ネットワーク / ゲノム合成 / NGSデータ / 機械学習 / RNA二次構造予測 / マルチプルアラインメント / 整数計画法 / 双対分解 / 期待精度最大化 / 構造アラインメント / 一塩基多型 … More Except Principal Investigator バイオインフォマティクス / mRNA / 翻訳効率 / 配列設計 / RNA修飾塩基 / 相互作用 / 化合物フィンガープリント / 人工知能 / バーチャルスクリーニング / マルチオミックス / 深層学習 / ケミカルスペース / EGFR / chromatin immunoprecipitation / promoter sequence / hidden Markov model / transcriptional regulation / transcription biding site / ゲルシフトアッセイ / 転写因子結合部位 / 分子細胞生物学 / レポーターアッセイ / 決定木 / モチーフ変異体 / クラスタリング / 主成分分析 / 血小板由来増殖因子 / クロマチン免疫沈降 / プロモーター / 隠れマルコフモデル / 転写制御 / 転写結合モチーフ / マウス / 腫瘍 / 次世代シークエンサー / 遺伝子発現解析 / 非コードRNA / 発がん / RNA-RNA相互作用 / 確率モデル / マイクロRNA / snoRNA / RNA / 機能性RNA Less

ハイスループット構造データを活用した深層学習による階層型RNA立体構造予測Principal Investigator
- Principal Investigator
  
  佐藤健吾
- Project Period (FY)
  2025 – 2028
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 62:Applied informatics and related fields
- Research Institution
  Institute of Science Tokyo
化学修飾を含むmRNA配列設計の基盤技術
- Principal Investigator
  
  浅井潔
- Project Period (FY)
  2024 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 62:Applied informatics and related fields
- Research Institution
  The University of Tokyo
修飾塩基を含むRNAの二次構造解析技術の確立Principal Investigator
- Principal Investigator
  
  佐藤健吾
- Project Period (FY)
  2024 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Institute of Science Tokyo
  Tokyo Denki University
GenomeGAN: in silico genome design with generative adversarial networksPrincipal Investigator
- Principal Investigator
  
  Sato Kengo
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 62:Applied informatics and related fields
- Research Institution
  Keio University
RNA secondary structure prediction using nanopore sequencersPrincipal Investigator
- Principal Investigator
  
  Sato Kengo
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Tokyo Denki University
  Keio University
Deep analysis of chemical communication space using artificial intelligence technology
- Principal Investigator
  
  Sakakibara Yasubumi
- Project Period (FY)
  2017 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  Keio University
Improving the accuracy of RNA secondary structure prediction by machine learning based on next-generation sequencing dataPrincipal Investigator
- Principal Investigator
  
  Sato Kengo
- Project Period (FY)
  2016 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Keio University
Ultra-fast RNA structural alignments with pseudoknotsPrincipal Investigator
- Principal Investigator
  
  Sato Kengo
- Project Period (FY)
  2013 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Keio University
Comprehensive analysis of functional non-coding RNAs in cancer genome on multistage carcinogenesis
- Principal Investigator
  
  SAKAKIBARA Yasubumi
- Project Period (FY)
  2011 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  System genome science
- Research Institution
  Keio University
Exhaustive prediction of microRNAs, snoRNAs and their targets
- Principal Investigator
  
  ASAI Kiyoshi
- Project Period (FY)
  2010 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo
Analysis of SNPs that induce structural change of RNA secondary structuresPrincipal Investigator
- Principal Investigator
  
  SATO Kengo
- Project Period (FY)
  2010 – 2011
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Keio University
SYS tern Analysis of Transcriptional Regulation Program
- Principal Investigator
  
  SAKAKIBARA Yasubumi
- Project Period (FY)
  2004 – 2006
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  KEIO UNIVERSITY

[Journal Article] RNA secondary structure prediction by conducting multi-class classifications2025
- Author(s)
  Yang Jiyuan、Sato Kengo、Loza Martin、Park Sung-Joon、Nakai Kenta
- Journal Title
  
  Computational and Structural Biotechnology Journal
  
  Volume: 27 Pages: 1449-1459
- DOI
  10.1016/j.csbj.2025.04.001
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K06189, KAKENHI-PROJECT-23K24944
[Journal Article] A functional connection between the Microprocessor and a variant NEXT complex2024
- Author(s)
  Imamura Katsutoshi、Garland William、Schmid Manfred、Jakobsen Lis、Sato Kengo、Rouviere Jerome O.、Jakobsen Kristoffer Pors、Burlacu Elena、Lopez Marta Loureiro、Lykke-Andersen Soren、Andersen Jens S.、Jensen Torben Heick
- Journal Title
  
  Molecular Cell
  
  Volume: 84 Issue: 21 Pages: 4158-4174.e6
- DOI
  10.1016/j.molcel.2024.10.015
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K24944, KAKENHI-PROJECT-24K23258
[Journal Article] Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery2023
- Author(s)
  Sato Kengo、Hamada Michiaki
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 24 Issue: 4
- DOI
  10.1093/bib/bbad186
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K24944, KAKENHI-PROJECT-22H04925
[Journal Article] RNA Secondary Structure Prediction Based on Energy Models2023
- Author(s)
  Akiyama Manato、Sato Kengo
- Journal Title
  
  Methods in Molecular Biology
  
  Volume: 2586 Pages: 89-105
- DOI
  10.1007/978-1-0716-2768-6_6
- ISBN
  9781071627679, 9781071627686
- Data Source
  KAKENHI-PROJECT-23K24944
[Journal Article] Direct Inference of Base-Pairing Probabilities with Neural Networks Improves Prediction of RNA Secondary Structures with Pseudoknots2022
- Author(s)
  Akiyama Manato、Sakakibara Yasubumi、Sato Kengo
- Journal Title
  
  Genes
  
  Volume: 13 Issue: 11 Pages: 2155-2155
- DOI
  10.3390/genes13112155
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H04210, KAKENHI-PROJECT-23K24944
[Journal Article] A Web Server for Designing Molecular Switches Composed of Two Interacting RNAs2021
- Author(s)
  Taneda Akito、Sato Kengo
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 22 Issue: 5 Pages: 2720-2720
- DOI
  10.3390/ijms22052720
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K11519, KAKENHI-PROJECT-19K22897, KAKENHI-PROJECT-19H04210
[Journal Article] RNA secondary structure prediction using deep learning with thermodynamic integration2021
- Author(s)
  Sato Kengo、Akiyama Manato、Sakakibara Yasubumi
- Journal Title
  
  Nature Communications
  
  Volume: 12 Issue: 1 Pages: 941-941
- DOI
  10.1038/s41467-021-21194-4
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K22897, KAKENHI-PROJECT-18J21767, KAKENHI-PROJECT-19H04210
[Journal Article] Machine-Learning-Guided Library Design Cycle for Directed Evolution of Enzymes: The Effects of Training Data Composition on Sequence Space Exploration2021
- Author(s)
  Saito Yutaka、Oikawa Misaki、Sato Takumi、Nakazawa Hikaru、Ito Tomoyuki、Kameda Tomoshi、Tsuda Koji、Umetsu Mitsuo
- Journal Title
  
  ACS Catalysis
  
  Volume: 11 Issue: 23 Pages: 14615-14624
- DOI
  10.1021/acscatal.1c03753
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19K20409, KAKENHI-PLANNED-17H06410
[Journal Article] A Max-Margin Model for Predicting Residue-Base Contacts in Protein-RNA Interactions2021
- Author(s)
  Kashiwagi Shunya、Sato Kengo、Sakakibara Yasubumi
- Journal Title
  
  Life
  
  Volume: 11 Issue: 11 Pages: 1135-1135
- DOI
  10.3390/life11111135
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K22897, KAKENHI-PLANNED-17H06410, KAKENHI-PROJECT-19H04210
[Journal Article] Prediction of RNA secondary structure including pseudoknots for long sequences2021
- Author(s)
  Sato Kengo、Kato Yuki
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 23 Issue: 1
- DOI
  10.1093/bib/bbab395
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K22897, KAKENHI-PLANNED-17H06410, KAKENHI-PROJECT-19H04210
[Journal Article] An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data2020
- Author(s)
  Jayakumar Vasanthan、Ishii Hiromi、Seki Misato、Kumita Wakako、Inoue Takashi、Hase Sumitaka、Sato Kengo、Okano Hideyuki、Sasaki Erika、Sakakibara Yasubumi
- Journal Title
  
  BMC Genomics
  
  Volume: 21 Issue: S3 Pages: 243-243
- DOI
  10.1186/s12864-020-6657-2
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K22897, KAKENHI-PROJECT-16K00404, KAKENHI-PROJECT-19K06462, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-17H06410, KAKENHI-PROJECT-18H04127, KAKENHI-PROJECT-19H04210
[Journal Article] Convolutional neural network based on SMILES representation of compounds for detecting chemical motif2018
- Author(s)
  Hirohara Maya、Saito Yutaka、Koda Yuki、Sato Kengo、Sakakibara Yasubumi
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 19 Issue: S19 Pages: 526-526
- DOI
  10.1186/s12859-018-2523-5
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K00404, KAKENHI-PLANNED-17H06410
[Journal Article] A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model2018
- Author(s)
  Akiyama Manato、Sato Kengo、Sakakibara Yasubumi
- Journal Title
  
  Journal of Bioinformatics and Computational Biology
  
  Volume: 16 Issue: 06 Pages: 1840025-1840025
- DOI
  10.1142/s0219720018400255
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K00404, KAKENHI-PLANNED-17H06410, KAKENHI-PROJECT-18H04127, KAKENHI-PROJECT-18J21767
[Journal Article] Extension of Question-Answering Program to Automatically Answering the Medical Licensing Examination to Drug Related Questions2018
- Author(s)
  Mizuguchi Tatsuya、Ito Shino、Sato Kengo、Sakakibara Yasubumi
- Journal Title
  
  Transactions of the Japanese Society for Artificial Intelligence
  
  Volume: 33 Issue: 6 Pages: E-I58_1-10
- DOI
  10.1527/tjsai.E-I58
- ISSN
  1346-0714, 1346-8030
- Year and Date
  2018-11-01
- Language
  Japanese
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K00404
[Journal Article] DEclust: A statistical approach for obtaining differential expression profiles of multiple conditions.2017
- Author(s)
  Aoto Y, Hachiya T, Okumura K, Hase S, Sato K, Wakabayashi Y, and Sakakibara Y.
- Journal Title
  
  PLoS One
  
  Volume: 12 (11) Issue: 11 Pages: e0188285-e0188285
- DOI
  10.1371/journal.pone.0188285
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K06817, KAKENHI-PROJECT-15K08438, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-17H06410
[Journal Article] An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data2017
- Author(s)
  Y. Kato, T. Mori, K. Sato, S. Maegawa, H. Hosokawa, T. Akutsu
- Journal Title
  
  Bioinformatics
  
  Volume: 33 Issue: 2 Pages: 202-209
- DOI
  10.1093/bioinformatics/btw603
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26240034, KAKENHI-PROJECT-25330348, KAKENHI-PROJECT-15K00401
[Journal Article] SHARAKU: An algorithm for aligning and clustering read mapping profiles of deep sequencing in non-coding RNA processing2016
- Author(s)
  Tsuchiya, M., Amano, K., Abe, M., Seki, M., Hase, S., Sato, K., Sakakibara, Y.
- Journal Title
  
  Bioinformatics
  
  Volume: 32
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25330348
[Journal Article] Prediction of Gene Structures from RNA-seq Data Using Dual Decomposition2016
- Author(s)
  Inatsuki, T, Sato, K., Sakakibara, Y.
- Journal Title
  
  IPSJ Transactions on Bioinformatics
  
  Volume: 9 Issue: 0 Pages: 1-6
- DOI
  10.2197/ipsjtbio.9.1
- NAID
  130005139841
- ISSN
  1882-6679
- Language
  English
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25330348
[Journal Article] Rtools: a web server for various secondary structural analyses on single RNA sequences2016
- Author(s)
  Hamada Michiaki, Ono Yukiteru, Kiryu Hisanori, Sato Kengo, Kato Yuki, Fukunaga Tsukasa, Mori Ryota, Asai Kiyosh
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 44 Issue: W1 Pages: W302-W307
- DOI
  10.1093/nar/gkw337
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-13J06668, KAKENHI-PROJECT-24680031, KAKENHI-PROJECT-25240044, KAKENHI-PROJECT-25330348, KAKENHI-PROJECT-25870190, KAKENHI-PROJECT-15K00401, KAKENHI-PROJECT-16H06279
[Journal Article] A machine learning based approach to de novo sequencing of glycans from tandem mass spectrometry spectrum2015
- Author(s)
  Kumozaki, S., Sato, K., Sakakibara, Y.
- Journal Title
  
  IEEE/ACM Trans Comput Biol Bioinform
  
  Volume: 印刷中
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-23241066
[Journal Article] Whole-genome sequencing and comparative genome analysis of Bacillus subtilis strains isolated from non-salted fermented soybean foods2015
- Author(s)
  Kamada, M., Hase, S., Fujii, K., Miyake, M., Sato, K., Kimura, K., Sakakibara, Y.
- Journal Title
  
  PLoS ONE
  
  Volume: 10 Issue: 10 Pages: e0141369-e0141369
- DOI
  10.1371/journal.pone.0141369
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25330348
[Journal Article] MetaVelvet-SL: An extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning2015
- Author(s)
  Afiahayati, Sato, K., and Sakakibara, Y.
- Journal Title
  
  DNA Research
  
  Volume: 22 Issue: 1 Pages: 69-77
- DOI
  10.1093/dnares/dsu041
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-25330348, KAKENHI-PROJECT-221S0002
[Journal Article] A machine learning based approach to de novo sequencing of glycans from tandem mass spectrometry spectrum2015
- Author(s)
  Kumozaki, S., Sato, K., Sakakibara, Y.
- Journal Title
  
  IEEE/ACM Transactions on Computatinal Biology and Bioinformatics
  
  Volume: 12
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-25330348
[Journal Article] Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis2015
- Author(s)
  Sato, K., Kuroki, Y., Kumita, W., Fujiyama, A., Toyoda, A., Kawai, J., Iriki, A., Sasaki, E., Okano, H., Sakakibara, Y.
- Journal Title
  
  Scientific Reports
  
  Volume: 5 Issue: 1 Pages: 16894-16894
- DOI
  10.1038/srep16894
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25330348, KAKENHI-PROJECT-221S0002
[Journal Article] Whole genome complete resequencing of Bacillus subtilis natto by combining long reads with high-quality short reads2014
- Author(s)
  Kamada, M., Hase, S., Sato, K., Toyoda, A., Fujiyama, A., Sakakibara, Y.
- Journal Title
  
  PLOS ONE
  
  Volume: 9 Issue: 10 Pages: e109999-e109999
- DOI
  10.1371/journal.pone.0109999
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-25330348, KAKENHI-PROJECT-221S0002
[Journal Article] An extended genovo metagenomic assembler by incorporating paired-end information2013
- Author(s)
  Afiahayati, Sato K., Sakakibara Y.
- Journal Title
  
  PeerJ
  
  Volume: 1 Pages: e196-e196
- DOI
  10.7717/peerj.196
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-221S0002
[Journal Article] Independent genetic control of early and late stages of chemically induced skin tumors in a cross of a Japanese wild derived inbred mouse strain, MSM/Ms2012
- Author(s)
  Okumura K, Sato M, Ikuo M, Wakana S, Mao JH, Miyasaka Y, Kominami R, and Wakabayashi Y.
- Journal Title
  
  Carcinogenesis
  
  Volume: 33 Issue: 11 Pages: 2260-2268
- DOI
  10.1093/carcin/bgs250
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-23310036, KAKENHI-PROJECT-23590454, KAKENHI-PROJECT-23790435
[Journal Article] Rtips : fast and accurate tools for RNA 2D structure prediction using integer programming2012
- Author(s)
  Yuki Kato, Kengo Sato, Kiyoshi Asai, Tatsuya Akutsu
- Journal Title
  
  Nucleic Acids Res
  
  Volume: 40 Issue: W1 Pages: W29-W34
- DOI
  10.1093/nar/gks412
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240031, KAKENHI-PROJECT-23650153, KAKENHI-PROJECT-24700296
[Journal Article] An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds2012
- Author(s)
  Nakamura, M., Hachiya, T., Saito, Y., Sato, K., and Sakakibara, Y.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 13 Issue: S17
- DOI
  10.1186/1471-2105-13-s17-s8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-221S0002
[Journal Article] COPICAT : A software system for predicting interactions between proteins and chemical compounds2012
- Author(s)
  Sakakibara, Y., Hachiya, T., Uchida, M., Nagamine, N., Sugawara, Y., Yokota, M., Nakamura, M., Poperdorf, K., Komori, T., Sato, K.
- Journal Title
  
  Bioinformatics
  
  Volume: vol.28, no.5 Pages: 745-756
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] Rtips : fast and accurate tools for RNA 2D structure prediction using integer programming2012
- Author(s)
  Kato, Y., Sato, K., Asai, K., Akutsu, T.
- Journal Title
  
  Nucleic Acids Res
  
  Volume: (in press)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition2012
- Author(s)
  Kengo Sato, Yuki Kato, Tatsuya Akutsu, Kiyoshi Asai, Yasubumi Sakakibara
- Journal Title
  
  Bioinformatics
  
  Volume: 28 Issue: 24 Pages: 3218-3224
- DOI
  10.1093/bioinformatics/bts612
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240009, KAKENHI-PROJECT-22240031, KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-23650153, KAKENHI-PROJECT-24700296, KAKENHI-PROJECT-221S0002
[Journal Article] Improved measurements of RNA structure conservation with generalized centroid estimators2011
- Author(s)
  Okada, Y., Saito, Y., Sato, K., Sakakibara, Y.
- Journal Title
  
  Front. Gene
  
  Volume: 2 Pages: 54-54
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] Adaptive seeds tame genomic sequence comparison2011
- Author(s)
  Kielbasa, SM., Wan, R., Sato, K., Horton, P., Frith, MC
- Journal Title
  
  Genome Res
  
  Volume: vol.21, no.3 Pages: 487-493
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] CentroidHomfold-LAST : accurateprediction of RNA secondary structure using automatically collected homologous sequences2011
- Author(s)
  Michiaki Hamada, Koichiro Yamada, Kengo Sato, Martin C Frith, Kiyoshi Asai
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 39
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240031
[Journal Article] Improved measurements of RNA structure conservation with generalized centroid estimators2011
- Author(s)
  Yohei Okada
- Journal Title
  
  Frontiers in Genetics
  
  Volume: 2 Pages: 54-54
- DOI
  10.3389/fgene.2011.00054
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305, KAKENHI-PROJECT-23241066
[Journal Article] CentroidHomfold-LAST : accurate prediction of RNA secondary structure using automatically collected homologous sequences2011
- Author(s)
  Michiaki Hamada, Koichiro Yamada, Kengo Sato, Martin C Frith, Kiyoshi Asai
- Journal Title
  
  Nucleic Acids Res
  
  Volume: 39 Issue: suppl_2 Pages: W100-W106
- DOI
  10.1093/nar/gkr290
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240031, KAKENHI-PROJECT-22700305
[Journal Article] Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures2011
- Author(s)
  Saito, Y., Sato, K., Sakakibara, Y.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 12(Suppl 1)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] CentroidHomfold-LAST : Accurate prediction of RNA secondary structure using automatically collected homologous sequences2011
- Author(s)
  Hamada, M., Yamada, K., Sato, K., Frith, MC., Asai, K.
- Journal Title
  
  Nucleic Acids Res
  
  Volume: vol.39
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] Using binding profiles to predict binding sites of target RNAs2011
- Author(s)
  Poolsap, U., Kato, Y., Sato, K., Akutsu, T.
- Journal Title
  
  J. Bioinform. Comput. Biol
  
  Volume: vol.9, no.6 Pages: 697-713
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] Improving the accuracy of predicting secondary structure for aligned RNA sequences2011
- Author(s)
  Hamada, M., Sato, K., Asai, K.
- Journal Title
  
  Nucleic Acids Res
  
  Volume: vol.39, no.2 Pages: 393-402
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] IPknot : fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming2011
- Author(s)
  K.Sato, Y.Kato, M.Hamada, T.Akutsu, K.Asai
- Journal Title
  
  Bioinformatics
  
  Volume: 27 Issue: 13 Pages: i85-i93
- DOI
  10.1093/bioinformatics/btr215
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240009, KAKENHI-PROJECT-22240031, KAKENHI-PROJECT-22700305, KAKENHI-PROJECT-22700313, KAKENHI-PROJECT-23650153
[Journal Article] IPknot : fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming2011
- Author(s)
  Sato, K., Kato, Y., Hamada, M., Akutsu, T., Asai, K.
- Journal Title
  
  Bioinformatics
  
  Volume: vol.27, no.13
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] Improving the accuracy of predicting secondary structure for aligned RNA sequences2011
- Author(s)
  Michiaki Hamada, Kengo Sato, Kiyoshi Asai
- Journal Title
  
  Nucleic Acids Res
  
  Volume: 39 Issue: 2 Pages: 393-402
- DOI
  10.1093/nar/gkq792
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240031
[Journal Article] Robust and accurate prediction of noncoding RNAs from aligned sequences2010
- Author(s)
  Saito, Y., Sato, K., Sakakibara, Y.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 11(Suppl 7)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] A non-parametric Bayesian approach for predicting RNA secondary structures2010
- Author(s)
  Sato, K., Hamada, M., Mituyama, T., Asai, K., Sakakibara, Y.
- Journal Title
  
  J. Bioinform. Comput. Biol
  
  Volume: vol.8, no.4 Pages: 727-742
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] Prediction of RNA secondary structure by maximizing pseudo-expected accuracy2010
- Author(s)
  Hamada, M., Sato, K., Asai, K.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 11 Pages: 586-586
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] A non-parametric Bayesian approach for predicting RNA secondary structures2010
- Author(s)
  Kengo Sato
- Journal Title
  
  Journal of Bioinformatics and Computational Biology
  
  Volume: 8 Pages: 727-742
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] Prediction of RNA secondary structure by maximizing pseudo-expected accuracy2010
- Author(s)
  Michiaki Hamada, Kengo Sato, Kiyoshi Asai
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 11 Issue: 1 Pages: 586-586
- DOI
  10.1186/1471-2105-11-586
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240031
[Journal Article] RactIP : fast and accurate prediction of RNA-RNA interaction using integer programming2010
- Author(s)
  Yuki Kato, Kengo Sato
- Journal Title
  
  Bioinformatics
  
  Volume: 26
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] A non-parametric Bayesian approach for predicting RNA secondary structures2010
- Author(s)
  Kengo Sato, Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai, Yasufumi Sakakibara
- Journal Title
  
  Journal of Bioinformatics and Computational Biology
  
  Volume: 8 Issue: 04 Pages: 727-742
- DOI
  10.1142/s0219720010004926
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240031
[Journal Article] RactIP : fast and accurate prediction of RNA-RNA interaction using integer programming2010
- Author(s)
  Yuki Kato, Kengo Sato, Michiaki Hamada, Yoshihide Watanabe, Kiyoshi Asai, Tatsuya Akutsu
- Journal Title
  
  Bioinformatics
  
  Volume: 26 Issue: 18 Pages: i460-i466
- DOI
  10.1093/bioinformatics/btq372
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22240031
[Journal Article] RactIP : fast and accurate prediction of RNA-RNA interaction using integer programming2010
- Author(s)
  Kato, Y., Sato, K., Hamada, M., Watanabe, Y., Asai, K., Akutsu, T.
- Journal Title
  
  Bioinformatics
  
  Volume: vol.26, no.18
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22700305
[Journal Article] Stem Kernels for RNA Sequence Analyses2007
- Author(s)
  Sakakibara, Y., Asai, K., Sato, K.
- Journal Title
  
  Proc. 1st International Conference on Bioinformatics Research and Development
  
  Pages: 278-291
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-16300095
[Journal Article] Stem Kernels for RNA Sequence Analyze2007
- Author(s)
  Sakakibara, Y., Asai, K., Sato, K.
- Journal Title
  
  Proc. 1st International Conference on Bioinformatics Research And Development
  
  Pages: 278-291
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-16300095
[Journal Article] RNA secondary structural alignment with conditional random fields2005
- Author(s)
  Sato, K., Sakakibara, Y.
- Journal Title
  
  Bioinformatics 21(2)
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-16300095
[Journal Article] RNA secondary structural alignment with conditional random fields2005
- Author(s)
  Sato, K., Sakakibara, Y.
- Journal Title
  
  Bioinformatics 21・2
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-16300095
[Journal Article] Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures2004
- Author(s)
  H.Matsui, K.Sato, Y.Sakakibara
- Journal Title
  
  Proceedings of 3rd Computational Systems Bioinformatics Conference (CSB2004)
  
  Pages: 290-299
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-16300095
[Presentation] 遺伝的アルゴリズムを用いたmRNA配列設計2025
- Author(s)
  高谷勇輝、佐藤健吾
- Organizer
  情報処理学会第81回バイオ情報学研究会
- Data Source
  KAKENHI-PROJECT-23K24944
[Presentation] Recent advances in RNA secondary structure prediction with machine learning and deep learning2024
- Author(s)
  佐藤健吾
- Organizer
  RNAインフォマティクス道場2024
- Data Source
  KAKENHI-PROJECT-23K24944
[Presentation] CASP16参加報告：RNAおよびRNA-タンパク質複合体の立体構造予測の現状と課題2024
- Author(s)
  佐藤健吾
- Organizer
  Science Tokyo 設立記念「AIが変える創薬とタンパク質構造予測の最前線シンポジウム」
- Invited
- Data Source
  KAKENHI-PROJECT-23K24944
[Presentation] Ongoing Participation Report on RNA 3D structure prediction at CASP16: Usage and limitations of AlphaFold32024
- Author(s)
  Junichi Iwakiri, Shunsuke Sumi, Takumi Otagaki, Kazuteru Yamamura, Jiro Kondo, Kengo Sato
- Organizer
  RNA学会年会
- Data Source
  KAKENHI-PROJECT-23K24944
[Presentation] 深層学習の生命科学応用とRNA二次構造予測の最新研究2024
- Author(s)
  佐藤健吾
- Organizer
  第81回産総研AIセミナー
- Invited
- Data Source
  KAKENHI-PROJECT-23K24944
[Presentation] Recent advances in RNA secondary structure prediction with machine learning and deep learning2024
- Author(s)
  Kengo Sato
- Organizer
  Computational Approaches to RNA Structure and Function
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K24944
[Presentation] 拡散モデルによるRNAアプタマー配列の設計2024
- Author(s)
  松本英倫、佐藤健吾
- Organizer
  情報処理学会第77回バイオ情報学研究会
- Data Source
  KAKENHI-PROJECT-23K24944
[Presentation] Participation Report on RNA 3D structure prediction at CASP16: Usage and limitations of AlphaFold32024
- Author(s)
  Junichi Iwakiri, Takumi Otagaki, Kazuteru Yamamura, Shunsuke Sumi, Ikuo Kurisaki, Jiro Kondo, Kengo Sato
- Organizer
  1st Asia & Pacific Bioinformatics Joint Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K24944
[Presentation] 深層学習によるRNA二次構造予測法MXfold2の精度改善2023
- Author(s)
  佐藤健吾
- Organizer
  情報処理学会第75回バイオ情報学研究会
- Data Source
  KAKENHI-PROJECT-23K24944
[Presentation] 深層学習によるRNA二次構造予測MXfold2の機能追加と性能改善2023
- Author(s)
  佐藤健吾
- Organizer
  RNAインフォマティクス道場2023
- Data Source
  KAKENHI-PROJECT-23K24944
[Presentation] MXfold2: 深層学習を用いたRNA二次構造予測2021
- Author(s)
  佐藤健吾，秋山真那斗，榊原康文
- Organizer
  第44回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-19K22897
[Presentation] Prediction of RNA secondary structure including pseudoknots for long sequences2021
- Author(s)
  Kengo Sato, Yuki Kato
- Organizer
  情報処理学会第68回バイオ研究発表会
- Data Source
  KAKENHI-PROJECT-19K22897
[Presentation] RNA secondary structure prediction using deep learning with thermodynamic integration2021
- Author(s)
  Sato, K., Akiyama, M., Sakakibara, Y.
- Organizer
  RNA meeting 2021
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K22897
[Presentation] RNA secondary structure prediction using deep learning with thermodynamic integration2021
- Author(s)
  Sato, K., Akiyama, M., Sakakibara, Y.
- Organizer
  Noncoding RNAs: Biology and Applications, Keystone Symposia
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K22897
[Presentation] RNA secondary structure prediction using deep learning with thermodynamic integration,2021
- Author(s)
  Sato, K., Akiyama, M., Sakakibara, Y.
- Organizer
  第10回生命医薬情報学連合大会，日本バイオインフォマティクス学会2021年年会
- Data Source
  KAKENHI-PROJECT-19K22897
[Presentation] プライバシー保護技術を用いた遺伝子発現差異解析2021
- Author(s)
  Kawaguchi, K., Sakakibara, Y., Sato, K.
- Organizer
  第10回生命医薬情報学連合大会，日本バイオインフォマティクス学会2021年年会
- Data Source
  KAKENHI-PROJECT-19K22897
[Presentation] RNA secondary structure prediction using deep learning with thermodynamic integration2021
- Author(s)
  Sato, K., Akiyama, M., Sakakibara, Y.
- Organizer
  The 29th Intelligent Systems for Molecular Biology and the 20th European Conference on Computational Biology (ISMB/ECCB 2021)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K22897
[Presentation] Deep learning-based prediction of potential RNA G-quadruplexes with D-Quartet2021
- Author(s)
  Kato, Y., Sato, K., Havgaard, JH., Kawahara, Y.
- Organizer
  The 29th Intelligent Systems for Molecular Biology and the 20th European Conference on Computational Biology (ISMB/ECCB 2021)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K22897
[Presentation] 深層強化学習を用いた二次構造に基づくRNA配列の設計2020
- Author(s)
  Yuki Hotta, Yasubumi Sakakibara and Kengo Sato
- Organizer
  第9回生命医薬情報学連合大会(IIBMP2020)
- Data Source
  KAKENHI-PROJECT-19H04210
[Presentation] A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model2020
- Author(s)
  Akiyama, M., Sato, K., Sakakibara, Y.
- Organizer
  Noncoding RNAs: Mechanism,Function and Therapies, Keystone Symposia
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04210
[Presentation] A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model2020
- Author(s)
  Akiyama, M., Sato, K., Sakakibara, Y.
- Organizer
  Noncoding RNAs: Mechanism,Function and Therapies, Keystone Symposia
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00404
[Presentation] A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model2020
- Author(s)
  Akiyama, M., Sato, K., Sakakibara, Y.
- Organizer
  Noncoding RNAs: Mechanism,Function and Therapies, Keystone Symposia
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K22897
[Presentation] 深層強化学習を用いた二次構造に基づくRNA配列の設計2020
- Author(s)
  Yuki Hotta, Yasubumi Sakakibara and Kengo Sato
- Organizer
  第9回生命医薬情報学連合大会(IIBMP2020)
- Data Source
  KAKENHI-PROJECT-19K22897
[Presentation] A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model2019
- Author(s)
  Akiyama, M., Sato, K., Sakakibara, Y.
- Organizer
  RNA Informatics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K22897
[Presentation] A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model2019
- Author(s)
  Akiyama, M., Sato, K., Sakakibara, Y.
- Organizer
  RNA Informatics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00404
[Presentation] A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model2019
- Author(s)
  Akiyama, M., Sato, K., Sakakibara, Y.
- Organizer
  RNA Informatics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04210
[Presentation] 深層学習に基づくRNAグアニン４重鎖構造識別法の検討2018
- Author(s)
  加藤有己，佐藤健吾，Jakob Hull Havgaard，河原行郎
- Organizer
  第20回日本RNA学会年会
- Data Source
  KAKENHI-PROJECT-16K00404
[Presentation] 機械学習を用いたRNA二次構造予測2018
- Author(s)
  佐藤健吾
- Organizer
  日本バイオインフォマティクス学会九州地域部会セミナー
- Invited
- Data Source
  KAKENHI-PROJECT-16K00404
[Presentation] Convolutional neural network based on SMILES representation of compounds for detecting chemical motif2018
- Author(s)
  Maya Hirohara, Yutaka Saito, Yuki Koda, Kengo Sato, Yasubumi Sakakibara
- Organizer
  The 29th International Conference on Genome Informatics (GIW 2018)
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06410
[Presentation] 機械学習を用いたRNA二次構造予測2018
- Author(s)
  佐藤健吾
- Organizer
  日本バイオインフォマティクス学会九州地域部会セミナー
- Invited
- Data Source
  KAKENHI-PLANNED-17H06410
[Presentation] がん細胞株における derived RNA のプロファイル解析2017
- Author(s)
  青木言太，土谷麻里子，小坂威雄，長谷純崇，佐藤健吾，水野隆一，大家基嗣，榊原康文
- Organizer
  第19回日本RNA学会年会
- Data Source
  KAKENHI-PROJECT-16K00404
[Presentation] RNA secondary structure prediction using deep learning2017
- Author(s)
  Akiyama, M., Sakakibara, Y., Sato, K.
- Organizer
  第6回生命医薬情報学連合大会，日本バイオインフォマティクス学会2017年年会
- Data Source
  KAKENHI-PROJECT-16K00404
[Presentation] 深層学習によるRNA二次構造予測2017
- Author(s)
  秋山真那斗，榊原康文，佐藤健吾
- Organizer
  第19回日本RNA学会年会
- Data Source
  KAKENHI-PROJECT-16K00404
[Presentation] Rtools: a web server for various secondary structural analyses on single RNA sequences2016
- Author(s)
  Hamada, M., Ono, Y., Kiryu, H., Sato, K., Kato, Y., Fukunaga, T., Mori, R., Asai, K.
- Organizer
  The 21st Annual meeting of the RNA Society (RNA2016)
- Place of Presentation
  京都国際会館（京都府・京都市）
- Year and Date
  2016-06-28
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25330348
[Presentation] Accurate prediction of RNA-RNA interactions from sequence data incorporating interaction site accessibility2016
- Author(s)
  Kato, Y., Mori, T., Sato, K., Maegawa, S., Hosokawa, H., Akutsu, T.
- Organizer
  The 21st Annual meeting of the RNA Society (RNA2016)
- Place of Presentation
  京都国際会館（京都府・京都市）
- Year and Date
  2016-06-28
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25330348
[Presentation] Inverse folding of two interacting RNA molecules2016
- Author(s)
  Taneda, A., Sato, K.
- Organizer
  第5回生命医薬情報学連合大会，日本バイオインフォマティクス学会2016年年会
- Place of Presentation
  東京国際交流館プラザ平成（東京都・江東区）
- Year and Date
  2016-09-29
- Data Source
  KAKENHI-PROJECT-16K00404
[Presentation] Improving RNA secondary structure prediction with weak label learning from NGS data2016
- Author(s)
  Akiyama, M., Sakakibara, Y., Sato, K.
- Organizer
  第5回生命医薬情報学連合大会，日本バイオインフォマティクス学会2016年年会
- Place of Presentation
  東京国際交流館プラザ平成（東京都・江東区）
- Year and Date
  2016-09-29
- Data Source
  KAKENHI-PROJECT-16K00404
[Presentation] 統計的検定結果に基づく高精度クラスタリングアルゴリズムの開発2015
- Author(s)
  青戸良賢，八谷剛史，奥村和弘，長谷純崇，佐藤健吾，若林雄一，榊原康文
- Organizer
  情報処理学会第43回バイオ情報学研究会
- Place of Presentation
  慶應義塾大学（神奈川県横浜市）
- Year and Date
  2015-09-12
- Data Source
  KAKENHI-PROJECT-25330348
[Presentation] 双対分解によるマルチプルアラインメント2015
- Author(s)
  穴水拓郎，榊原康文，佐藤健吾
- Organizer
  情報処理学会第43回バイオ情報学研究会
- Place of Presentation
  慶應義塾大学（神奈川県横浜市）
- Year and Date
  2015-09-12
- Data Source
  KAKENHI-PROJECT-25330348
[Presentation] Prediction of gene structures from RNA-seq data using dual decomposition2015
- Author(s)
  Inatsuki, T, Sato, K., Sakakibara, Y.
- Organizer
  情報処理学会第42回バイオ情報学研究会
- Place of Presentation
  沖縄先端科学技術大学院大学（沖縄県恩納村）
- Year and Date
  2015-06-02
- Data Source
  KAKENHI-PROJECT-25330348
[Presentation] A max-margin model for predicting residue-base contacts in protein-RNA interactions2015
- Author(s)
  Sato, K., Kashiwagi, S., Sakakibara, Y.
- Organizer
  GIW/InCoB 2015
- Place of Presentation
  科学未来館（東京都江東区）
- Year and Date
  2015-09-09
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25330348
[Presentation] 機械学習を用いたタンパク質とRNAのコンタクト予測2014
- Author(s)
  佐藤健吾，柏木駿也，榊原康文
- Organizer
  第3回生命医薬情報学連合大会，日本バイオインフォマティクス学会2014年年会
- Place of Presentation
  仙台国際センター（宮城県・仙台市）
- Year and Date
  2014-10-03
- Data Source
  KAKENHI-PROJECT-23241066
[Presentation] デジタルクラスタリングを用いた発がん過程の経時的トランスクリプトーム解析2013
- Author(s)
  ６）青戸良賢，八谷剛史，奥村和弘，長谷純崇，佐藤健吾，若林雄一，榊原康文
- Organizer
  情報処理学会第33回バイオ情報学研究発表会
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-23241066
[Presentation] 双対分解によるRNA構造アラインメント2012
- Author(s)
  佐藤健吾, 加藤有己, 浅井潔, 阿久津達也, 榊原康文
- Organizer
  第28回情報処理学会バイオ情報学研究会
- Place of Presentation
  仙台
- Year and Date
  2012-03-28
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] 双対分解によるRNA構造アラインメント2012
- Author(s)
  佐藤健吾
- Organizer
  第28回情報処理学会バイオ情報学研究会
- Place of Presentation
  東北大学
- Year and Date
  2012-03-28
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] Rtips : an integrated web server for RNA structure prediction using IP scheme2011
- Author(s)
  佐藤健吾
- Organizer
  新しいRNA/RNPを見つける会2011
- Place of Presentation
  フェストーネ(沖縄)
- Year and Date
  2011-09-16
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] Comprehensive analysis of small non-coding RNAs in medaka transcriptome by deep RNA-seq approach2011
- Author(s)
  ９） Abe, M., Hase, S., Ogawa, M., Okada, Y., Sato, K., Saito, Y., and Sakakibara, Y.
- Organizer
  RNA 2011 Sixteenth Annual Meeting of the RNA Society,
- Place of Presentation
  Kyoto, Japan
- Data Source
  KAKENHI-PROJECT-23241066
[Presentation] Simultaneous aligning and folding RNA sequences by dual decomposition2011
- Author(s)
  Sato, K., Kato, Y., Akutsu, T., Asai, K., Sakakibara, Y.
- Organizer
  CBI/JSBi 2011合同大会
- Place of Presentation
  神戸
- Year and Date
  2011-11-10
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] Comprehensive analysis of small non-coding RNAs in medaka transcriptome by deep RNA-seq approach2011
- Author(s)
  Abe, M., Hase, S., Ogawa, M., Okada, Y., Sato, K., Saito, Y., Sakakibara, Y.
- Organizer
  The 16th Annual Meeting of the RNA society
- Place of Presentation
  京都
- Year and Date
  2011-06-15
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures2011
- Author(s)
  Saito, Y., Sato, K., Sakakibara, Y.
- Organizer
  The 9th Asia Pacific Bioinformatics Conference(APBC 2011)
- Place of Presentation
  インチョン
- Year and Date
  2011-01-14
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] Rtips : fast and accurate tools for RNA 2D structure prediction using integer programming2011
- Author(s)
  佐藤健吾
- Organizer
  第34回分子生物学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] Simultaneous aligning and folding RNA sequences by dual decomposition2011
- Author(s)
  Kengo Sato
- Organizer
  CBI/JSBi 2011合同大会
- Place of Presentation
  神戸国際会議場
- Year and Date
  2011-11-10
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] Rtips : fast and accurate tools for RNA 2D structure prediction using integer programming2011
- Author(s)
  佐藤健吾, 加藤有己, 浅井潔, 阿久津達也
- Organizer
  第34回分子生物学会年会
- Place of Presentation
  横浜
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] IPknot : fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming2011
- Author(s)
  Sato, K., Kato, Y., Hamada, M., Akutsu, T., Asai, K.
- Organizer
  ISMB/ECCB 2011
- Place of Presentation
  ウィーン
- Year and Date
  2011-07-17
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] 期待精度最大化に基づくRNAシュードノット予測2010
- Author(s)
  佐藤健吾, 加藤有己, 阿久津達也, 浅井潔
- Organizer
  第22回情報処理学会バイオ情報学研究会
- Place of Presentation
  東京
- Year and Date
  2010-07-29
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] RactIP : fast and accurate prediction of RNA-RNA interaction using integer programming2010
- Author(s)
  Kato, Y., Sato, K., Hamada, M., Watanabe, Y., Asai, K., Akutsu, T.
- Organizer
  The 9th European Conference on Computational Biology(ECCB 2010)
- Place of Presentation
  ゲント
- Year and Date
  2010-09-27
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] Improved prediction of transcription binding sites from chromatin modification data2010
- Author(s)
  Sato, K., Whitington, T., Bailey, T., Horton, P.
- Organizer
  The 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology(CIBCB 2010)
- Place of Presentation
  モントリオール
- Year and Date
  2010-05-05
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] RNA-RNA interaction prediction using integer programming with threshold cut2010
- Author(s)
  加藤有己, 佐藤健吾, 浜田道昭, 浅井潔, 阿久津達也
- Organizer
  第21回情報処理学会バイオ情報学研究会
- Place of Presentation
  那覇
- Year and Date
  2010-06-19
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] Robust and accurate prediction of noncoding RNAs from aligned sequences2010
- Author(s)
  Saito, Y., Sato, K., Sakakibara, Y.
- Organizer
  The International Conference on Bioinformatics(InCoB 2010)
- Place of Presentation
  東京
- Year and Date
  2010-09-26
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] Fast and accurate RNA structure prediction tools : RactIP for RNA-RNA interaction and IPknot for RNA pseudoknot structure prediction2010
- Author(s)
  佐藤健吾
- Organizer
  新しいRNA/RNPを見つける会2010
- Place of Presentation
  弘前大学
- Year and Date
  2010-09-06
- Data Source
  KAKENHI-PROJECT-22700305
[Presentation] 機械学習を用いたタンパク質とRNAのコンタクト予測
- Author(s)
  佐藤健吾，柏木駿也，榊原康文
- Organizer
  第3回生命医薬情報学連合大会，日本バイオインフォマティクス学会2014年年会
- Place of Presentation
  仙台国際センター（宮城県・仙台市）
- Year and Date
  2014-10-02 – 2014-10-04
- Data Source
  KAKENHI-PROJECT-25330348
[Presentation] 機械学習を用いたタンパク質とRNAのコンタクト予測
- Author(s)
  佐藤健吾，柏木駿也，榊原康文
- Organizer
  第16回日本RNA学会年会
- Place of Presentation
  ウィンクあいち（愛知県・名古屋市）
- Year and Date
  2014-07-23 – 2014-07-25
- Data Source
  KAKENHI-PROJECT-25330348

1. SAKAKIBARA Yasubumi (10287427)

# of Collaborated Projects: 3 results

# of Collaborated Products: 15 results
2. ASAI Kiyoshi (30356357)

# of Collaborated Projects: 2 results

# of Collaborated Products: 7 results
3. 加藤有己 (10511280)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. 河原行郎 (80542563)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
5. KIRYU Hisanori (80415778)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. HIROSE Tetsurou (30273220)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. WAKABAYASHI Yuichi (40303119)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
8. IMOTO Masaya (60213253)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. YUGI Katsuyuki (70433745)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 齋藤裕 (60721496)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
11. 上田宏生 (70821916)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. 阿部洋 (80415067)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 近藤次郎 (10546576)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. 岩切淳一 (40770160)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. OKUMURA Kazuhiro

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
16. HOSOKAWA Hiroshi

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
17. MAEGAWA Shingo

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
18. 種田晃人

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
19. 阿久津達也

# of Collaborated Projects: 0 results

# of Collaborated Products: 3 results
20. 中井謙太

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

SATO KENGO 佐藤 健吾

SATO Kengo 佐藤 健吾

Research Projects

Research Products

Co-Researchers

ハイスループット構造データを活用した深層学習による階層型RNA立体構造予測Principal Investigator

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化学修飾を含むmRNA配列設計の基盤技術

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修飾塩基を含むRNAの二次構造解析技術の確立Principal Investigator

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GenomeGAN: in silico genome design with generative adversarial networksPrincipal Investigator

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RNA secondary structure prediction using nanopore sequencersPrincipal Investigator

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Deep analysis of chemical communication space using artificial intelligence technology

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Improving the accuracy of RNA secondary structure prediction by machine learning based on next-generation sequencing dataPrincipal Investigator

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Ultra-fast RNA structural alignments with pseudoknotsPrincipal Investigator

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Comprehensive analysis of functional non-coding RNAs in cancer genome on multistage carcinogenesis

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Exhaustive prediction of microRNAs, snoRNAs and their targets

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Analysis of SNPs that induce structural change of RNA secondary structuresPrincipal Investigator

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SYS tern Analysis of Transcriptional Regulation Program

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[Journal Article] RNA secondary structure prediction by conducting multi-class classifications2025

Author(s)

Journal Title

SATO KENGO 佐藤健吾

SATO Kengo 佐藤健吾